* using log directory 'd:/RCompile/CRANincoming/R-devel/solareclipser.Rcheck' * using R version 4.5.0 beta (2025-04-02 r88102 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'solareclipser/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'solareclipser' version '0.3.3' * package encoding: UTF-8 * will not attempt to install this package on Windows * checking CRAN incoming feasibility ... [137s] NOTE Maintainer: 'William Burroughs ' New submission Possibly misspelled words in DESCRIPTION: QTLs (13:58) solareclipser (18:27) Suggests or Enhances not in mainstream repositories: rsnps Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Found the following (possibly) invalid URLs: URL: http://bioinformatics.oxfordjournals.org/content/32/12/1901 From: inst/CITATION Status: 403 Message: Forbidden URL: http://cran.r-project.org/web/packages/solareclipser/ From: inst/doc/tutorial.html Status: 404 Message: Not Found CRAN URL not in canonical form URL: http://en.wikipedia.org/wiki/Huntington%27s_disease (moved to https://en.wikipedia.org/wiki/Huntington%27s_disease) From: inst/doc/tutorial.html Status: 301 Message: Moved Permanently URL: http://helix.nih.gov/Documentation/solar-6.6.2-doc/91.appendix_1_text.html From: README.md Status: Error Message: Timeout was reached [helix.nih.gov]: Failed to connect to helix.nih.gov port 80 after 21038 ms: Could not connect to server URL: http://helix.nih.gov/Documentation/solar-6.6.2-doc/91.appendix_1_text.html#mga From: inst/doc/tutorial.html README.md Status: Error Message: Timeout was reached [helix.nih.gov]: Failed to connect to helix.nih.gov port 80 after 42092 ms: Could not connect to server URL: http://helix.nih.gov/Documentation/solar-6.6.2-doc/91.appendix_1_text.html#multipoint From: inst/doc/tutorial.html README.md Status: Error Message: Timeout was reached [helix.nih.gov]: Connection timed out after 60001 milliseconds URL: http://helix.nih.gov/Documentation/solar-6.6.2-doc/91.appendix_1_text.html#polygenic From: README.md Status: Error Message: Timeout was reached [helix.nih.gov]: Operation timed out after 60001 milliseconds with 0 bytes received URL: http://mga.bionet.nsc.ru/soft/FFBSKAT/ (moved to https://mga.bionet.nsc.ru/soft/FFBSKAT/) From: man/dat50.Rd inst/doc/tutorial.html Status: 301 Message: Moved Permanently URL: http://solar.txbiomedgenetics.org/ From: inst/doc/tutorial.html Status: Error Message: Could not resolve hostname [solar.txbiomedgenetics.org]: Could not resolve host: solar.txbiomedgenetics.org URL: http://solar.txbiomedgenetics.org/doc/05.chapter.html From: man/solarMultipoint.Rd Status: Error Message: Could not resolve hostname [solar.txbiomedgenetics.org]: Could not resolve host: solar.txbiomedgenetics.org URL: http://solar.txbiomedgenetics.org/doc/91.appendix_1_text.html#chromosome From: man/solarMultipoint.Rd Status: Error Message: Could not resolve hostname [solar.txbiomedgenetics.org]: Could not resolve host: solar.txbiomedgenetics.org URL: http://solar.txbiomedgenetics.org/doc/91.appendix_1_text.html#ibd From: man/solarMultipoint.Rd Status: Error Message: Could not resolve hostname [solar.txbiomedgenetics.org]: Could not resolve host: solar.txbiomedgenetics.org URL: http://solar.txbiomedgenetics.org/doc/91.appendix_1_text.html#multipoint From: man/solarMultipoint.Rd Status: Error Message: Timeout was reached [solar.txbiomedgenetics.org]: Operation timed out after 60001 milliseconds with 0 bytes received URL: http://solar.txbiomedgenetics.org/doc/91.appendix_1_text.html#polygenic From: man/solarPolygenic.Rd Status: Error Message: Could not resolve hostname [solar.txbiomedgenetics.org]: Could not resolve host: solar.txbiomedgenetics.org URL: http://solar.txbiomedgenetics.org/solarlinux.html From: inst/doc/tutorial.html Status: Error Message: Timeout was reached [solar.txbiomedgenetics.org]: Operation timed out after 60001 milliseconds with 0 bytes received URL: http://solar.txbiomedgenetics.org/solarwindows.html From: inst/doc/tutorial.html Status: Error Message: Timeout was reached [solar.txbiomedgenetics.org]: Resolving timed out after 60001 milliseconds URL: http://ugcd.github.io/solareclipser/vignettes/tutorial.html#association-model-in-solar From: README.md Status: 404 Message: Not Found URL: http://ugcd.github.io/solareclipser/vignettes/tutorial.html#linkage-model-in-solar From: README.md Status: 404 Message: Not Found URL: http://ugcd.github.io/solareclipser/vignettes/tutorial.html#parallel-computation From: README.md Status: 404 Message: Not Found URL: http://ugcd.github.io/solareclipser/vignettes/tutorial.html#parallel-computation-1 From: README.md Status: 404 Message: Not Found URL: http://ugcd.github.io/solareclipser/vignettes/tutorial.html#polygenic-model-in-solar From: README.md Status: 404 Message: Not Found URL: http://www.biostat.wustl.edu/genetics/geneticssoft/manuals/solar210/08.chapter.html From: man/solarKinship2.Rd Status: 404 Message: Not Found URL: https://github.com/Rdatatable/data.table/blob/master/CRAN_Release.cmd From: inst/doc/tutorial.html Status: 404 Message: Not Found URL: https://github.com/enigma-1590c46634/solareclipser (moved to https://github.com/txbrain-org/solareclipser) From: DESCRIPTION Status: 301 Message: Moved Permanently URL: https://github.com/hadley/ggplot2 (moved to https://github.com/tidyverse/ggplot2) From: inst/doc/tutorial.html Status: 301 Message: Moved Permanently URL: https://github.com/ugcd/solareclipser/blob/master/DESCRIPTION From: inst/doc/tutorial.html Status: 404 Message: Not Found URL: https://solar-eclipse-genetics.org// From: DESCRIPTION Status: 404 Message: Not Found The canonical URL of the CRAN page for a package is https://CRAN.R-project.org/package=pkgname For content that is 'Moved Permanently', please change http to https, add trailing slashes, or replace the old by the new URL. Found the following (possibly) invalid file URIs: URI: ./release/solareclipser_0.3.3.tar.gz From: README.md URI: inst/doc/tutorial.md From: README.md The Date field is over a month old. This build time stamp is over a month old. Size of tarball: 77183241 bytes * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK