downloading reverse dependencies ‘multigroup.vaccine’, ‘contactsurveys’, ‘finalsize’, ‘o2geosocial’ trying URL 'file:///data/Repositories/CRAN/src/contrib/multigroup.vaccine_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/contactsurveys_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/finalsize_0.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/o2geosocial_1.1.3.tar.gz' installing dependencies ‘contactsurveys’, ‘outbreaker2’, ‘socialmixr’, ‘wpp2017’, ‘zen4R’ begin installing package ‘wpp2017’ begin installing package ‘socialmixr’ begin installing package ‘zen4R’ begin installing package ‘outbreaker2’ * installing *source* package ‘wpp2017’ ... ** this is package ‘wpp2017’ version ‘1.2-3’ ** package ‘wpp2017’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wpp2017) * installing *source* package ‘socialmixr’ ... ** this is package ‘socialmixr’ version ‘0.6.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (socialmixr) * installing *source* package ‘zen4R’ ... ** this is package ‘zen4R’ version ‘0.10.5’ ** package ‘zen4R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zen4R) begin installing package ‘contactsurveys’ * installing *source* package ‘contactsurveys’ ... ** this is package ‘contactsurveys’ version ‘0.1.0’ ** package ‘contactsurveys’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (contactsurveys) * installing *source* package ‘outbreaker2’ ... ** this is package ‘outbreaker2’ version ‘1.1.4’ ** package ‘outbreaker2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXgMLa3/R.INSTALL35d3ff24e63831/outbreaker2/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c internals.cpp -o internals.o internals.cpp: In function ‘Rcpp::IntegerVector cpp_find_descendents(Rcpp::IntegerVector, size_t)’: internals.cpp:114:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 114 | for (size_t j = 0; j < alpha.size(); j++) { | ~~^~~~~~~~~~~~~~ internals.cpp:115:18: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 115 | if (alpha[j] == i) n++; internals.cpp:121:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 121 | for (size_t j = 0; j < alpha.size(); j++) { | ~~^~~~~~~~~~~~~~ internals.cpp:122:18: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 122 | if (alpha[j] == i) { internals.cpp: In function ‘Rcpp::IntegerVector cpp_find_local_cases(Rcpp::IntegerVector, size_t)’: internals.cpp:169:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 169 | for (size_t j = 0; j < desc_i.size(); j++) { | ~~^~~~~~~~~~~~~~~ internals.cpp:178:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 178 | for (size_t j = 0; j < desc_alpha_i.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~ internals.cpp:179:28: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 179 | if ( desc_alpha_i[j] != i) { internals.cpp: In function ‘Rcpp::List cpp_swap_cases(Rcpp::List, size_t)’: internals.cpp:251:21: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 251 | if (alpha_in[j] == i) { internals.cpp:253:28: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 253 | } else if (alpha_in[j] == x) { g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c likelihoods.cpp -o likelihoods.o likelihoods.cpp: In function ‘double cpp_ll_genetic(Rcpp::List, Rcpp::List, SEXP, Rcpp::RObject)’: likelihoods.cpp:114:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | if (kappa[j] < 1 || kappa[j] > K) { likelihoods.cpp:146:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 146 | if (kappa[j] < 1 || kappa[j] > K) { likelihoods.cpp: In function ‘double cpp_ll_timing_infections(Rcpp::List, Rcpp::List, SEXP, Rcpp::RObject)’: likelihoods.cpp:240:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 240 | if (kappa[j] < 1 || kappa[j] > K) { likelihoods.cpp:264:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 264 | if (kappa[j] < 1 || kappa[j] > K) { likelihoods.cpp: In function ‘double cpp_ll_timing_sampling(Rcpp::List, Rcpp::List, SEXP, Rcpp::RObject)’: likelihoods.cpp:322:32: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 322 | if (delay < 1 || delay > f_dens.size()) { | ~~~~~~^~~~~~~~~~~~~~~ likelihoods.cpp:334:32: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 334 | if (delay < 1 || delay > f_dens.size()) { | ~~~~~~^~~~~~~~~~~~~~~ likelihoods.cpp: In function ‘double cpp_ll_reporting(Rcpp::List, Rcpp::List, SEXP, Rcpp::RObject)’: likelihoods.cpp:402:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 402 | if (kappa[j] < 1 || kappa[j] > K) { likelihoods.cpp:415:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 415 | if (kappa[j] < 1 || kappa[j] > K) { g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c moves.cpp -o moves.o moves.cpp: In function ‘Rcpp::List cpp_move_kappa(Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::RObject)’: moves.cpp:566:44: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 566 | if (new_kappa[i] < 1 || new_kappa[i] > K) { g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c priors.cpp -o priors.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o outbreaker2.so RcppExports.o internals.o likelihoods.o moves.o priors.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXgMLa3/R.INSTALL35d3ff24e63831/outbreaker2/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-outbreaker2/00new/outbreaker2/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (outbreaker2) checking socialmixr_0.6.0.tar.gz ... checking multigroup.vaccine_0.1.1.tar.gz ... checking contactsurveys_0.1.0.tar.gz ... checking finalsize_0.2.1.tar.gz ... checking o2geosocial_1.1.3.tar.gz ... Depends: Package: socialmixr Depends: R (>= 4.1.0) Imports: checkmate, countrycode, curl, data.table, grDevices, httr, jsonlite, lifecycle, lubridate, memoise, purrr, oai, xml2, cli, rlang, methods Timings: user system elapsed socialmixr 75.829 7.023 82.179 Results: Check status summary: ERROR OK Source packages 0 1 Reverse depends 2 2 Check results summary: socialmixr ... OK rdepends_contactsurveys ... OK rdepends_finalsize ... ERROR * checking tests ... [3s/3s] ERROR * checking re-building of vignette outputs ... [14s/15s] ERROR rdepends_multigroup.vaccine ... ERROR * checking examples ... [1s/1s] ERROR * checking tests ... [230s/230s] ERROR * checking re-building of vignette outputs ... [11s/11s] ERROR rdepends_o2geosocial ... OK Check results changes: Package: finalsize Check: re-building of vignette outputs New result: ERROR Package: finalsize Check: tests New result: ERROR Package: multigroup.vaccine Check: examples New result: ERROR Package: multigroup.vaccine Check: re-building of vignette outputs New result: ERROR Package: multigroup.vaccine Check: tests New result: ERROR