* using log directory ‘/srv/hornik/tmp/CRAN_pretest/snreg.Rcheck’ * using R Under development (unstable) (2026-01-25 r89330) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 21.1.8 (1+b1) Debian flang version 21.1.8 (1+b1) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * checking for file ‘snreg/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘snreg’ version ‘1.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/5s] NOTE Maintainer: ‘Oleg Badunenko ’ New submission Possibly misspelled words in DESCRIPTION: Badunenko (14:66) The Description field contains Productivity Analysis, https://doi.org/10.1007/s11123-023-00680-5. Please enclose URLs in angle brackets (<...>). The Description field contains Productivity Analysis, https://doi.org/10.1007/s11123-023-00680-5. Please write DOIs as . The Date field is over a month old. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘snreg’ can be installed ... [4s/4s] OK * used C compiler: ‘Debian clang version 21.1.8 (1+b1)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE Non-standard file/directory found at top level: ‘README.Rmd’ * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... WARNING Found the following file with non-ASCII characters: R/vcov.snreg.R Portable packages must use only ASCII characters in their R code and NAMESPACE directives, except perhaps in comments. Use \uxxxx escapes for other characters. Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII characters in files. * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘Formula’ ‘npsf’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... WARNING print: function(x, ...) print.summary.snreg: function(obj, digits, ...) summary: function(object, ...) summary.snreg: function(obj, ...) See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. Mismatches for methods registered for non-generic: coef: function(object, ...) coef.snreg: function(obj, ...) residuals: function(object, ...) residuals.snreg: function(obj, esample, ...) vcov: function(object, ...) vcov.snreg: function(obj, ...) See section ‘Registering S3 methods’ in the ‘Writing R Extensions’ manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s/7s] NOTE .nearPSD: warning in eigen(c, sym = TRUE): partial argument match of 'sym' to 'symmetric' .gr.hess.sn.exp_: no visible global function definition for ‘pnorm’ .gr.hess.sn.exp_: no visible global function definition for ‘dnorm’ .gr.sn.exp.R: no visible global function definition for ‘pnorm’ .gr.sn.exp.R: no visible global function definition for ‘dnorm’ .gr.sn.exp.by.i.R: no visible global function definition for ‘pnorm’ .gr.sn.exp.by.i.R: no visible global function definition for ‘dnorm’ .ll.lm.mle: no visible global function definition for ‘dnorm’ .ll.sn: no visible global function definition for ‘dnorm’ .ll.sn: no visible global function definition for ‘pnorm’ .ll.sn.exp.R: no visible global function definition for ‘pnorm’ .ll.sn.exp.R.by.i: no visible global function definition for ‘pnorm’ .ll.sn.hn: no visible global function definition for ‘pnorm’ .ll.sn.hn: no visible global function definition for ‘dnorm’ .ll.sn.tn.R: no visible global function definition for ‘pnorm’ .ll.sn.tn.R: no visible global function definition for ‘dnorm’ .ll.sn0: no visible global function definition for ‘dnorm’ .ll.sn0: no visible global function definition for ‘pnorm’ .mlmaximize: no visible global function definition for ‘runif’ .mlmaximize: no visible global function definition for ‘pt’ .mlmaximize: no visible global function definition for ‘qt’ .mlmaximize: no visible global function definition for ‘printCoefmat’ .mlsearch: no visible global function definition for ‘terms’ .mlsearch: no visible global function definition for ‘formula’ .mlsearch: no visible global function definition for ‘runif’ .su : : no visible global function definition for ‘sd’ .su : : no visible global function definition for ‘IQR’ .su : : no visible global function definition for ‘quantile’ TOwen.gr.1: no visible global function definition for ‘pnorm’ gradient1.mp: no visible global function definition for ‘%dopar%’ gradient1.mp: no visible global function definition for ‘foreach’ gradient1.mp: no visible binding for global variable ‘i’ hessian1.mp: no visible global function definition for ‘%dopar%’ hessian1.mp: no visible global function definition for ‘foreach’ hessian1.mp: no visible binding for global variable ‘k’ lm.mle: no visible global function definition for ‘as.Formula’ lm.mle: no visible global function definition for ‘model.matrix’ lm.mle: no visible global function definition for ‘model.part’ lm.mle: no visible global function definition for ‘lm’ lm.mle: no visible global function definition for ‘resid’ lm.mle: no visible global function definition for ‘coef’ lm.mle: no visible global function definition for ‘optim’ lm.mle: no visible global function definition for ‘pnorm’ lm.mle: no visible global function definition for ‘printCoefmat’ lmd: no visible global function definition for ‘dnorm’ lmd: no visible global function definition for ‘pnorm’ print.summary.snreg: no visible global function definition for ‘.printgtresfhet’ snreg: no visible global function definition for ‘as.Formula’ snreg: no visible global function definition for ‘model.matrix’ snreg: no visible global function definition for ‘model.part’ snreg: no visible global function definition for ‘lm’ snreg: no visible global function definition for ‘resid’ snreg: no visible global function definition for ‘coef’ snreg: no visible global function definition for ‘optim’ snreg: no visible global function definition for ‘pnorm’ snreg: no visible global function definition for ‘printCoefmat’ snsf: no visible global function definition for ‘as.Formula’ snsf: no visible global function definition for ‘model.matrix’ snsf: no visible global function definition for ‘model.part’ snsf: no visible global function definition for ‘lm’ snsf: no visible global function definition for ‘resid’ snsf: no visible global function definition for ‘coef’ snsf: no visible global function definition for ‘optim’ snsf: no visible global function definition for ‘pnorm’ snsf: no visible global function definition for ‘printCoefmat’ snsf: no visible binding for global variable ‘h’ snsf: no visible global function definition for ‘dnorm’ snsf: no visible global function definition for ‘var’ su: no visible global function definition for ‘%>%’ Undefined global functions or variables: %>% %dopar% .printgtresfhet IQR as.Formula coef dnorm foreach formula h i k lm model.matrix model.part optim pnorm printCoefmat pt qt quantile resid runif sd terms var Consider adding importFrom("stats", "IQR", "coef", "dnorm", "formula", "lm", "model.matrix", "optim", "pnorm", "printCoefmat", "pt", "qt", "quantile", "resid", "runif", "sd", "terms", "var") to your NAMESPACE file. * checking Rd files ... [0s/0s] NOTE checkRd: (-1) lm.mle.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lm.mle.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lm.mle.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lm.mle.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lm.mle.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lm.mle.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lm.mle.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lm.mle.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lm.mle.Rd:80-81: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lm.mle.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) lm.mle.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... WARNING Missing link(s) in Rd file 'residuals.snreg.Rd': ‘fitted.snreg’ See section 'Cross-references' in the 'Writing R Extensions' manual. Found the following Rd file(s) with Rd \link{} targets missing package anchors: residuals.snreg.Rd: fitted.snreg Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Data codoc mismatches from Rd file 'banks07.Rd': Variables in data frame 'banks07' Code: ER LA LLP SDROA TA TC W1 W2 W3 Y1 Y2 ZSCORE ZSCORE3 id lnsdroa lnzscore lnzscore3 ms_county scope year Docs: ER LA LLP TA TC W1 W2 Y1 Y2 id year * checking Rd \usage sections ... WARNING Undocumented arguments in Rd file 'TOwen1.Rd' ‘h’ ‘a’ Undocumented arguments in Rd file 'snsf.Rd' ‘technique’ ‘vcetype’ ‘report’ ‘trace’ ‘threads’ ‘only.data’ Documented arguments not in \usage in Rd file 'snsf.Rd': ‘optim.method’ ‘optim.reltol’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [0s/0s] OK * checking for unstated dependencies in vignettes ... NOTE 'library' or 'require' call not declared from: ‘tidyverse’ * checking package vignettes ... OK * checking re-building of vignette outputs ... [2s/2s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘illustration.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. [WARNING] Could not fetch resource man/figures/doi.png --- finished re-building ‘illustration.Rmd’ --- re-building ‘snreg-manual.Rmd’ using rmarkdown Quitting from snreg-manual.Rmd:19-22 [setup] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'tidyverse' --- Backtrace: ▆ 1. └─base::library(tidyverse) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'snreg-manual.Rmd' failed with diagnostics: there is no package called 'tidyverse' --- failed re-building ‘snreg-manual.Rmd’ SUMMARY: processing the following file failed: ‘snreg-manual.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 5 WARNINGs, 6 NOTEs