# fpath = system.file("testdata", package = "smerc") # fname = paste(fpath, "/edmst_test_ref.rda", sep = "") # load(fname) # # # test updated methods # data(nydf) # data(nyw) # coords = with(nydf, cbind(longitude, latitude)) # set.seed(1) # edmst_test_check = edmst.test(coords = coords, cases = floor(nydf$cases), # pop = nydf$pop, w = nyw, # alpha = 0.12, longlat = TRUE, # nsim = 19, ubpop = 0.1, ubd = 0.2) # # context("check edmst.test with reference") # test_that("edmst.test and edmst_test_ref match", { # for (i in seq_along(edmst_test_ref$clusters)) { # expect_equal(edmst_test_ref$clusters[[i]]$locids, edmst_test_check$clusters[[i]]$locids) # expect_equal(edmst_test_ref$clusters[[i]]$coords, edmst_test_check$clusters[[i]]$centroid) # expect_equal(edmst_test_ref$clusters[[i]]$r, edmst_test_check$clusters[[i]]$r) # expect_equal(edmst_test_ref$clusters[[i]]$max_dist, edmst_test_check$clusters[[i]]$max_dist) # expect_equal(edmst_test_ref$clusters[[i]]$pop, edmst_test_check$clusters[[i]]$pop) # expect_equal(edmst_test_ref$clusters[[i]]$cases, edmst_test_check$clusters[[i]]$cases) # expect_equal(edmst_test_ref$clusters[[i]]$ex, edmst_test_check$clusters[[i]]$expected) # expect_equal(edmst_test_ref$clusters[[i]]$smr, edmst_test_check$clusters[[i]]$smr) # expect_equal(edmst_test_ref$clusters[[i]]$rr, edmst_test_check$clusters[[i]]$rr) # expect_equal(edmst_test_ref$clusters[[i]]$loglikrat, edmst_test_check$clusters[[i]]$loglikrat) # expect_equal(edmst_test_ref$clusters[[i]]$test_statistic, edmst_test_check$clusters[[i]]$test_statistic) # expect_equal(edmst_test_ref$clusters[[i]]$pvalue, edmst_test_check$clusters[[i]]$pvalue) # expect_equal(edmst_test_ref$clusters[[i]]$w, edmst_test_check$clusters[[i]]$w) # } # })