* using log directory ‘/srv/hornik/tmp/CRAN_pretest/sleev.Rcheck’
* using R Under development (unstable) (2024-11-21 r87360)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘sleev/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sleev’ version ‘1.0.3’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/6s] WARNING
Maintainer: ‘Ran Tao <r.tao@vanderbilt.edu>’

Insufficient package version (submitted: 1.0.3, existing: 1.0.3)

Found the following (possibly) invalid URLs:
  URL: https://www.vanderbilthealth.com/service-line/comprehensive-care-clinic (moved to https://www.vanderbilthealth.com/clinic/comprehensive-care-clinic)
    From: man/mock.vccc.Rd
    Status: 301
    Message: Moved Permanently
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sleev’ can be installed ... [43s/43s] OK
* used C++ compiler: ‘Debian clang version 19.1.3 (2)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s/3s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [0s/0s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [7s/7s] ERROR
  Running ‘testthat.R’ [7s/7s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > test_check("sleev")
  Loading required package: sleev
  Loading required package: Rcpp
  [ FAIL 4 | WARN 0 | SKIP 3 | PASS 42 ]
  
  ══ Skipped tests (3) ═══════════════════════════════════════════════════════════
  • On CRAN (2): 'test_linear2ph.R:22:2', 'test_logistic2ph.R:107:2'
  • empty test (1): 'test_cv_linear2ph.R:4:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_linear2ph.R:107:5'): single iteration cubic ────────────────────
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'vctrs'
  Backtrace:
      ▆
   1. ├─testthat::expect_vector(data["Y"]) at test_linear2ph.R:107:5
   2. │ └─base::tryCatch(...)
   3. │   └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   4. │     └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. │       └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   6. └─base::loadNamespace(x)
   7.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   8.     └─base (local) withOneRestart(expr, restarts[[1L]])
   9.       └─base (local) doWithOneRestart(return(expr), restart)
  ── Error ('test_linear2ph.R:138:5'): single iteration histogram ────────────────
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'vctrs'
  Backtrace:
      ▆
   1. ├─testthat::expect_vector(data["Y"]) at test_linear2ph.R:138:5
   2. │ └─base::tryCatch(...)
   3. │   └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   4. │     └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. │       └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   6. └─base::loadNamespace(x)
   7.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   8.     └─base (local) withOneRestart(expr, restarts[[1L]])
   9.       └─base (local) doWithOneRestart(return(expr), restart)
  ── Error ('test_linear2ph.R:169:5'): single iteration quadratic ────────────────
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'vctrs'
  Backtrace:
      ▆
   1. ├─testthat::expect_vector(data["Y"]) at test_linear2ph.R:169:5
   2. │ └─base::tryCatch(...)
   3. │   └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   4. │     └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. │       └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   6. └─base::loadNamespace(x)
   7.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   8.     └─base (local) withOneRestart(expr, restarts[[1L]])
   9.       └─base (local) doWithOneRestart(return(expr), restart)
  ── Error ('test_linear2ph.R:200:5'): single iteration linear ───────────────────
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'vctrs'
  Backtrace:
      ▆
   1. ├─testthat::expect_vector(data["Y"]) at test_linear2ph.R:200:5
   2. │ └─base::tryCatch(...)
   3. │   └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   4. │     └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5. │       └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   6. └─base::loadNamespace(x)
   7.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   8.     └─base (local) withOneRestart(expr, restarts[[1L]])
   9.       └─base (local) doWithOneRestart(return(expr), restart)
  
  [ FAIL 4 | WARN 0 | SKIP 3 | PASS 42 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [0s/0s] OK
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING