downloading reverse dependencies ... downloading AdverseEvents_0.0.4.tar.gz ... ok downloading archetyper_0.1.0.tar.gz ... ok downloading chronicle_0.3.tar.gz ... ok downloading codebook_0.9.6.tar.gz ... ok downloading dataCompare_1.0.5.tar.gz ... ok downloading fastml_0.6.2.tar.gz ... ok downloading IGoRRR_0.3.4.tar.gz ... ok downloading mdsr_0.2.8.tar.gz ... ok downloading NIMAA_0.2.1.tar.gz ... ok downloading studentlife_1.1.0.tar.gz ... ok downloading volker_3.1.0.tar.gz ... ok downloading AMR_3.0.0.tar.gz ... ok downloading BDgraph_2.73.tar.gz ... ok downloading dispositionEffect_1.0.1.tar.gz ... ok downloading HVT_25.2.5.tar.gz ... ok downloading industRial_0.1.0.tar.gz ... ok downloading liver_1.19.tar.gz ... ok downloading panelr_0.7.8.tar.gz ... ok downloading papaja_0.1.3.tar.gz ... ok downloading REDCapTidieR_1.2.3.tar.gz ... ok downloading sdcLog_0.5.1.tar.gz ... ok downloading ssgraph_1.15.tar.gz ... ok downloading tidyprompt_0.0.1.tar.gz ... ok downloading tidyREDCap_1.1.2.tar.gz ... ok installing dependencies ‘babynames’, ‘baguette’, ‘bannerCommenter’, ‘bnstruct’, ‘bonsai’, ‘cffr’, ‘cleaner’, ‘DataExplorer’, ‘discrim’, ‘etl’, ‘explore’, ‘feather’, ‘finetune’, ‘labelVector’, ‘likert’, ‘log4r’, ‘macleish’, ‘markovchain’, ‘mltools’, ‘naniar’, ‘nycflights23’, ‘openxlsx2’, ‘plsmod’, ‘probably’, ‘qcc’, ‘qicharts2’, ‘redcapAPI’, ‘REDCapR’, ‘rmdfiltr’, ‘rmdpartials’, ‘rolldown’, ‘rosetta’, ‘SixSigma’, ‘skimr’, ‘ssgraph’, ‘tidyjson’, ‘tinylabels’, ‘ufs’ also installing the dependencies ‘daymetr’, ‘MODISTools’, ‘sjstats’, ‘phenocamr’, ‘shelter’ begin installing package ‘daymetr’ begin installing package ‘MODISTools’ begin installing package ‘sjstats’ begin installing package ‘shelter’ begin installing package ‘log4r’ begin installing package ‘bannerCommenter’ begin installing package ‘feather’ begin installing package ‘rolldown’ begin installing package ‘rmdpartials’ begin installing package ‘likert’ begin installing package ‘explore’ begin installing package ‘baguette’ begin installing package ‘bonsai’ begin installing package ‘discrim’ begin installing package ‘finetune’ begin installing package ‘plsmod’ begin installing package ‘probably’ begin installing package ‘naniar’ begin installing package ‘babynames’ begin installing package ‘etl’ begin installing package ‘nycflights23’ begin installing package ‘bnstruct’ begin installing package ‘cleaner’ begin installing package ‘ssgraph’ begin installing package ‘markovchain’ begin installing package ‘DataExplorer’ begin installing package ‘SixSigma’ begin installing package ‘qcc’ * installing *source* package ‘shelter’ ... ** this is package ‘shelter’ version ‘0.2.1’ ** package ‘shelter’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shelter) begin installing package ‘qicharts2’ * installing *source* package ‘bannerCommenter’ ... ** this is package ‘bannerCommenter’ version ‘1.0.0’ ** package ‘bannerCommenter’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bannerCommenter) begin installing package ‘mltools’ * installing *source* package ‘rmdpartials’ ... ** this is package ‘rmdpartials’ version ‘0.5.8’ ** package ‘rmdpartials’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmdpartials) begin installing package ‘tinylabels’ * installing *source* package ‘rolldown’ ... ** this is package ‘rolldown’ version ‘0.2’ ** package ‘rolldown’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rolldown) begin installing package ‘rmdfiltr’ * installing *source* package ‘daymetr’ ... ** this is package ‘daymetr’ version ‘1.7.1’ ** package ‘daymetr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (daymetr) begin installing package ‘REDCapR’ * installing *source* package ‘log4r’ ... ** this is package ‘log4r’ version ‘0.4.4’ ** package ‘log4r’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoBQWV8/R.INSTALL318239535ef1aa/log4r/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c log4r.c -o log4r.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c logfmt.c -o logfmt.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o log4r.so log4r.o logfmt.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoBQWV8/R.INSTALL318239535ef1aa/log4r/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-log4r/00new/log4r/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (log4r) begin installing package ‘openxlsx2’ * installing *source* package ‘rmdfiltr’ ... ** this is package ‘rmdfiltr’ version ‘0.1.5’ ** package ‘rmdfiltr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmdfiltr) begin installing package ‘cffr’ * installing *source* package ‘etl’ ... ** this is package ‘etl’ version ‘0.4.2’ ** package ‘etl’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (etl) begin installing package ‘tidyjson’ * installing *source* package ‘tinylabels’ ... ** this is package ‘tinylabels’ version ‘0.2.5’ ** package ‘tinylabels’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinylabels) begin installing package ‘labelVector’ * installing *source* package ‘cleaner’ ... ** this is package ‘cleaner’ version ‘1.5.5’ ** package ‘cleaner’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cleaner) begin installing package ‘skimr’ * installing *source* package ‘sjstats’ ... ** this is package ‘sjstats’ version ‘0.19.1’ ** package ‘sjstats’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sjstats) begin installing package ‘ufs’ * installing *source* package ‘qcc’ ... ** this is package ‘qcc’ version ‘2.7’ ** package ‘qcc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qcc) * installing *source* package ‘labelVector’ ... ** this is package ‘labelVector’ version ‘0.1.2’ ** package ‘labelVector’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (labelVector) begin installing package ‘redcapAPI’ * installing *source* package ‘discrim’ ... ** this is package ‘discrim’ version ‘1.0.1’ ** package ‘discrim’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (discrim) * installing *source* package ‘ssgraph’ ... ** this is package ‘ssgraph’ version ‘1.15’ ** package ‘ssgraph’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp88fXhe/R.INSTALL31828675ff16ca/ssgraph/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c copula.cpp -o copula.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gcgm_spike_slab.cpp -o gcgm_spike_slab.o gcgm_spike_slab.cpp: In function ‘void gcgm_spike_slab_map(int*, int*, int*, double*, double*, int*, double*, double*, int*, int*, double*, char**, double*, int*, double*, int*, int*, int*, double*, double*, double*, double*, int*)’: gcgm_spike_slab.cpp:380:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 380 | for( i = 0; i < size_sample_graph; i++ ) | ^~~ gcgm_spike_slab.cpp:389:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 389 | if( !this_one || size_sample_graph == 0 ) | ^~ g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ggm_spike_slab.cpp -o ggm_spike_slab.o ggm_spike_slab.cpp: In function ‘void ggm_spike_slab_map(int*, int*, int*, double*, double*, int*, double*, double*, int*, int*, double*, char**, double*, int*, double*, double*, double*, double*, int*)’: ggm_spike_slab.cpp:371:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 371 | for( i = 0; i < size_sample_graph; i++ ) | ^~~ ggm_spike_slab.cpp:380:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 380 | if( !this_one || size_sample_graph == 0 ) | ^~ g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix.cpp -o matrix.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ssgraph_init.c -o ssgraph_init.o g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ssgraph.so copula.o gcgm_spike_slab.o ggm_spike_slab.o matrix.o ssgraph_init.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp88fXhe/R.INSTALL31828675ff16ca/ssgraph/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ssgraph/00new/ssgraph/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ssgraph) * installing *source* package ‘qicharts2’ ... ** this is package ‘qicharts2’ version ‘0.8.1’ ** package ‘qicharts2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qicharts2) * installing *source* package ‘naniar’ ... ** this is package ‘naniar’ version ‘1.1.0’ ** package ‘naniar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (naniar) * installing *source* package ‘DataExplorer’ ... ** this is package ‘DataExplorer’ version ‘0.8.4’ ** package ‘DataExplorer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DataExplorer) * installing *source* package ‘bonsai’ ... ** this is package ‘bonsai’ version ‘0.4.0’ ** package ‘bonsai’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bonsai) * installing *source* package ‘SixSigma’ ... ** this is package ‘SixSigma’ version ‘0.11.1’ ** package ‘SixSigma’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SixSigma) * installing *source* package ‘likert’ ... ** this is package ‘likert’ version ‘1.3.5’ ** package ‘likert’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (likert) * installing *source* package ‘REDCapR’ ... ** this is package ‘REDCapR’ version ‘1.4.0’ ** package ‘REDCapR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (REDCapR) * installing *source* package ‘mltools’ ... ** this is package ‘mltools’ version ‘0.3.5’ ** package ‘mltools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mltools) * installing *source* package ‘tidyjson’ ... ** this is package ‘tidyjson’ version ‘0.3.2’ ** package ‘tidyjson’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidyjson) * installing *source* package ‘explore’ ... ** this is package ‘explore’ version ‘1.3.5’ ** package ‘explore’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (explore) * installing *source* package ‘skimr’ ... ** this is package ‘skimr’ version ‘2.2.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (skimr) * installing *source* package ‘cffr’ ... ** this is package ‘cffr’ version ‘1.2.0’ ** package ‘cffr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cffr) * installing *source* package ‘plsmod’ ... ** this is package ‘plsmod’ version ‘1.0.0’ ** package ‘plsmod’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plsmod) * installing *source* package ‘bnstruct’ ... ** this is package ‘bnstruct’ version ‘1.0.15’ ** package ‘bnstruct’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOgdinU/R.INSTALL31827c53a8a196/bnstruct/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bnstruct_init.c -o bnstruct_init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c impfast.c -o impfast.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mmhcfast.c -o mmhcfast.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c smfast.c -o smfast.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c util.c -o util.o util.c: In function ‘score_node_1’: util.c:52:10: warning: ‘score’ may be used uninitialized [-Wmaybe-uninitialized] 52 | return score; | ^~~~~ util.c:35:10: note: ‘score’ was declared here 35 | double score; | ^~~~~ gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o bnstruct.so bnstruct_init.o impfast.o mmhcfast.o smfast.o util.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOgdinU/R.INSTALL31827c53a8a196/bnstruct/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bnstruct/00new/bnstruct/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bnstruct) * installing *source* package ‘baguette’ ... ** this is package ‘baguette’ version ‘1.1.0’ ** package ‘baguette’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (baguette) * installing *source* package ‘finetune’ ... ** this is package ‘finetune’ version ‘1.2.1’ ** package ‘finetune’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (finetune) * installing *source* package ‘redcapAPI’ ... ** this is package ‘redcapAPI’ version ‘2.11.0’ ** package ‘redcapAPI’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (redcapAPI) * installing *source* package ‘nycflights23’ ... ** this is package ‘nycflights23’ version ‘0.2.0’ ** package ‘nycflights23’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nycflights23) * installing *source* package ‘probably’ ... ** this is package ‘probably’ version ‘1.1.0’ ** package ‘probably’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (probably) * installing *source* package ‘ufs’ ... ** this is package ‘ufs’ version ‘0.5.12’ ** package ‘ufs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ufs) begin installing package ‘rosetta’ * installing *source* package ‘MODISTools’ ... ** this is package ‘MODISTools’ version ‘1.1.5’ ** package ‘MODISTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MODISTools) begin installing package ‘phenocamr’ * installing *source* package ‘feather’ ... ** this is package ‘feather’ version ‘0.3.5’ ** package ‘feather’ successfully unpacked and MD5 sums checked ** using staged installation Platform is little endian. Good. ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpppSJgS/R.INSTALL318235cd7ab8a/feather/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c feather-read.cpp -o feather-read.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c feather-types.cpp -o feather-types.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c feather-write.cpp -o feather-write.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c feather/buffer.cc -o feather/buffer.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c feather/feather-c.cc -o feather/feather-c.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c feather/io.cc -o feather/io.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c feather/metadata.cc -o feather/metadata.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c feather/reader.cc -o feather/reader.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c feather/status.cc -o feather/status.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c feather/types.cc -o feather/types.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c feather/writer.cc -o feather/writer.o ar rcs libfeather.a feather/buffer.o feather/feather-c.o feather/io.o feather/metadata.o feather/reader.o feather/status.o feather/types.o feather/writer.o g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o feather.so RcppExports.o feather-read.o feather-types.o feather-write.o -L. -lfeather -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpppSJgS/R.INSTALL318235cd7ab8a/feather/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-feather/00new/feather/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (feather) * installing *source* package ‘phenocamr’ ... ** this is package ‘phenocamr’ version ‘1.1.5’ ** package ‘phenocamr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (phenocamr) begin installing package ‘macleish’ * installing *source* package ‘rosetta’ ... ** this is package ‘rosetta’ version ‘0.3.12’ ** package ‘rosetta’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location Registered S3 methods overwritten by 'ufs': method from pander.crossTab rosetta pander.freq rosetta print.crossTab rosetta print.freq rosetta ** testing if installed package keeps a record of temporary installation path * DONE (rosetta) * installing *source* package ‘babynames’ ... ** this is package ‘babynames’ version ‘1.0.1’ ** package ‘babynames’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (babynames) * installing *source* package ‘macleish’ ... ** this is package ‘macleish’ version ‘0.3.9’ ** package ‘macleish’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (macleish) * installing *source* package ‘openxlsx2’ ... ** this is package ‘openxlsx2’ version ‘1.17’ ** package ‘openxlsx2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLkMPlg/R.INSTALL3186501c6003fc/openxlsx2/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c date.cpp -o date.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c helper_functions.cpp -o helper_functions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c load_workbook.cpp -o load_workbook.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pugi.cpp -o pugi.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c strings_xml.cpp -o strings_xml.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c styles_xml.cpp -o styles_xml.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c write_file.cpp -o write_file.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c xlsb.cpp -o xlsb.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o openxlsx2.so RcppExports.o date.o helper_functions.o load_workbook.o pugi.o strings_xml.o styles_xml.o write_file.o xlsb.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLkMPlg/R.INSTALL3186501c6003fc/openxlsx2/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-openxlsx2/00new/openxlsx2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (openxlsx2) * installing *source* package ‘markovchain’ ... ** this is package ‘markovchain’ version ‘0.10.0’ ** package ‘markovchain’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5CvtJr/R.INSTALL3182875f9b68c3/markovchain/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c classesAndMethods.cpp -o classesAndMethods.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ctmcClassesAndMethods.cpp -o ctmcClassesAndMethods.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ctmcFittingFunctions.cpp -o ctmcFittingFunctions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ctmcProbabilistic.cpp -o ctmcProbabilistic.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fitHigherOrder.cpp -o fitHigherOrder.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fittingFunctions.cpp -o fittingFunctions.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/tbb.h:32, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/RcppParallel/TBB.h:10, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/RcppParallel.h:24, from fittingFunctions.cpp:6: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h: In instantiation of ‘tbb::atomic& tbb::internal::as_atomic(T&) [with T = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/tbb_thread.h:251:29: required from here 251 | return as_atomic(location.my_id).compare_and_swap(value.my_id, comparand.my_id); | ~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h:544:12: warning: casting ‘long unsigned int’ to ‘tbb::atomic&’ does not use ‘constexpr tbb::atomic::atomic(long unsigned int)’ [-Wcast-user-defined] 544 | return (atomic&)t; | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h: In instantiation of ‘tbb::atomic& tbb::internal::as_atomic(T&) [with T = tbb::interface5::internal::hash_map_base::bucket*]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/concurrent_hash_map.h:291:31: required from here 291 | && as_atomic(my_table[new_seg]).compare_and_swap(is_allocating, NULL) == NULL ) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h:544:12: warning: casting ‘tbb::interface5::internal::hash_map_base::bucket*’ to ‘tbb::atomic&’ does not use ‘constexpr tbb::atomic::atomic(T*) [with T = tbb::interface5::internal::hash_map_base::bucket]’ [-Wcast-user-defined] 544 | return (atomic&)t; | ^~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c multinomCI.cpp -o multinomCI.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c probabilistic.cpp -o probabilistic.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o markovchain.so RcppExports.o classesAndMethods.o ctmcClassesAndMethods.o ctmcFittingFunctions.o ctmcProbabilistic.o fitHigherOrder.o fittingFunctions.o multinomCI.o probabilistic.o utils.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5CvtJr/R.INSTALL3182875f9b68c3/markovchain/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-markovchain/00new/markovchain/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘sort’ in package ‘markovchain’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (markovchain) checking skimr_2.2.0.tar.gz ... checking AdverseEvents_0.0.4.tar.gz ... checking archetyper_0.1.0.tar.gz ... checking chronicle_0.3.tar.gz ... checking codebook_0.9.6.tar.gz ... checking dataCompare_1.0.5.tar.gz ... checking fastml_0.6.2.tar.gz ... checking IGoRRR_0.3.4.tar.gz ... checking mdsr_0.2.8.tar.gz ... checking NIMAA_0.2.1.tar.gz ... checking studentlife_1.1.0.tar.gz ... checking volker_3.1.0.tar.gz ... checking AMR_3.0.0.tar.gz ... checking BDgraph_2.73.tar.gz ... checking dispositionEffect_1.0.1.tar.gz ... checking HVT_25.2.5.tar.gz ... checking industRial_0.1.0.tar.gz ... checking liver_1.19.tar.gz ... checking panelr_0.7.8.tar.gz ... checking papaja_0.1.3.tar.gz ... checking REDCapTidieR_1.2.3.tar.gz ... checking sdcLog_0.5.1.tar.gz ... checking ssgraph_1.15.tar.gz ... checking tidyprompt_0.0.1.tar.gz ... checking tidyREDCap_1.1.2.tar.gz ... Depends: Package: skimr Depends: R (>= 4.1.0) Imports: cli, dplyr (>= 1.0.0), knitr (>= 1.2), pillar (>= 1.6.4), purrr, repr, rlang, stats, stringr (>= 1.1), tibble (>= 2.0.0), tidyr (>= 1.0), tidyselect (>= 1.0.0), vctrs (>= 0.5.0) Timings: user system elapsed skimr 63.068 5.651 69.177 Results: Check status summary: ERROR WARNING NOTE OK Source packages 0 0 0 1 Reverse depends 1 1 5 17 Check results summary: skimr ... OK rdepends_AdverseEvents ... OK rdepends_AMR ... OK rdepends_archetyper ... OK rdepends_BDgraph ... OK rdepends_chronicle ... OK rdepends_codebook ... OK rdepends_dataCompare ... OK rdepends_dispositionEffect ... OK rdepends_fastml ... OK rdepends_HVT ... OK rdepends_IGoRRR ... OK rdepends_industRial ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_liver ... OK rdepends_mdsr ... OK rdepends_NIMAA ... NOTE * checking Rd cross-references ... NOTE rdepends_panelr ... OK rdepends_papaja ... OK rdepends_REDCapTidieR ... WARNING * checking Rd cross-references ... WARNING rdepends_sdcLog ... OK rdepends_ssgraph ... NOTE * checking C++ specification ... NOTE rdepends_studentlife ... OK rdepends_tidyprompt ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_tidyREDCap ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_volker ... ERROR * checking whether package ‘volker’ can be installed ... [2s/2s] ERROR Check results changes: Package: archetyper Check: CRAN incoming feasibility Old result: NOTE Package: IGoRRR Check: CRAN incoming feasibility Old result: NOTE Package: panelr Check: CRAN incoming feasibility Old result: NOTE Package: REDCapTidieR Check: Rd cross-references New result: WARNING Package: ssgraph Check: CRAN incoming feasibility Old result: NOTE Package: volker Check: whether package can be installed New result: ERROR