test_that("Combine predictions", { # create a data cube from local files data_dir <- system.file("extdata/raster/mod13q1", package = "sits") cube <- sits_cube( source = "BDC", collection = "MOD13Q1-6.1", data_dir = data_dir, progress = FALSE ) # create a random forest model rfor_model <- sits_train(samples_modis_ndvi, sits_rfor()) # classify a data cube using rfor model output_dir <- paste0(tempdir(), "/comb") if (!dir.exists(output_dir)) { dir.create(output_dir) } probs_rfor_cube <- sits_classify( data = cube, ml_model = rfor_model, output_dir = output_dir, version = "rfor", progress = FALSE ) # create an XGBoost model xgb_model <- sits_train(samples_modis_ndvi, sits_xgboost()) # classify a data cube using xgboost model probs_xgb_cube <- sits_classify( data = cube, ml_model = xgb_model, output_dir = output_dir, version = "xgb", progress = FALSE ) # create a list of predictions to be combined pred_cubes <- list(probs_rfor_cube, probs_xgb_cube) # combine predictions comb_probs_cube_avg <- sits_combine_predictions( cubes = pred_cubes, type = "average", output_dir = output_dir, version = "comb_rfor_xgb_avg", multicores = 1 ) expect_equal(sits_labels(comb_probs_cube_avg), sits_labels(probs_xgb_cube)) expect_equal(sits_bbox(comb_probs_cube_avg), sits_bbox(probs_xgb_cube)) expect_equal(nrow(comb_probs_cube_avg), nrow(probs_xgb_cube)) rfor_obj <- .raster_open_rast(.tile_path(probs_rfor_cube)) xgb_obj <- .raster_open_rast(.tile_path(probs_xgb_cube)) avg_obj <- .raster_open_rast(.tile_path(comb_probs_cube_avg)) vls_rfor <- terra::values(rfor_obj) vls_xgb <- terra::values(xgb_obj) vls_avg <- terra::values(avg_obj) rfor <- as.vector(vls_rfor[1:10, 1]) xgb <- as.vector(vls_xgb[1:10, 1]) avg <- purrr::map2_int(rfor, xgb, function(r, x) { as.integer(mean(c(r, x))) }) avg2 <- as.vector(vls_avg[1:10, 1]) expect_true(all(abs(avg - avg2)) < 3) # Recovery Sys.setenv("SITS_DOCUMENTATION_MODE" = "FALSE") expect_message({ object <- sits_combine_predictions( cubes = pred_cubes, type = "average", output_dir = output_dir, version = "comb_rfor_xgb_avg" ) } ) # combine predictions uncert_rfor <- sits_uncertainty( cube = probs_rfor_cube, output_dir = output_dir, version = "uncert-rfor" ) uncert_xgboost <- sits_uncertainty( cube = probs_xgb_cube, output_dir = output_dir, version = "uncert-xgb" ) uncert_cubes <- list(uncert_rfor, uncert_xgboost) comb_probs_cube_uncert <- sits_combine_predictions( cubes = pred_cubes, type = "uncertainty", uncert_cubes = uncert_cubes, output_dir = output_dir, version = "comb_rfor_xgb_uncert" ) expect_equal( sits_labels(comb_probs_cube_uncert), sits_labels(probs_xgb_cube) ) expect_equal( sits_bbox(comb_probs_cube_uncert), sits_bbox(probs_xgb_cube) ) expect_equal( nrow(comb_probs_cube_uncert), nrow(probs_xgb_cube) ) unlink(probs_rfor_cube$file_info[[1]]$path) unlink(probs_xgb_cube$file_info[[1]]$path) unlink(uncert_rfor$file_info[[1]]$path) unlink(uncert_xgboost$file_info[[1]]$path) unlink(comb_probs_cube_avg$file_info[[1]]$path) unlink(comb_probs_cube_uncert$file_info[[1]]$path) })