test_that("Creating LS5-SR cubes from DEA", { landsat_cube <- .try( { sits_cube( source = "DEAFRICA", collection = "LS5-SR", bands = c("B05", "CLOUD"), roi = c( lon_min = 33.546, lon_max = 34.999, lat_min = 1.427, lat_max = 3.726 ), start_date = "2009-01-01", end_date = "2010-01-01", progress = FALSE ) }, .default = NULL ) testthat::skip_if(purrr::is_null(landsat_cube), message = "DEAFRICA is not accessible" ) expect_true(all(sits_bands(landsat_cube) %in% c("B05", "CLOUD"))) expect_equal(nrow(landsat_cube), 6) bbox_cube <- sits_bbox(landsat_cube, as_crs = "EPSG:4326") bbox_cube_1 <- sits_bbox(.tile(landsat_cube), as_crs = "EPSG:4326") expect_true(bbox_cube["xmax"] >= bbox_cube_1["xmax"]) expect_true(bbox_cube["ymax"] >= bbox_cube_1["ymax"]) r_obj <- .raster_open_rast(landsat_cube$file_info[[1]]$path[1]) cube_nrows <- .tile_nrows(landsat_cube) expect_true(.raster_nrows(r_obj) == cube_nrows) }) test_that("Creating LS7-SR cubes from DEA", { landsat_cube <- .try( { sits_cube( source = "DEAFRICA", collection = "LS7-SR", bands = c("B05", "CLOUD"), roi = c( lon_min = 33.546, lon_max = 34.999, lat_min = 1.427, lat_max = 3.726 ), start_date = "2009-01-01", end_date = "2010-01-01", progress = FALSE ) }, .default = NULL ) testthat::skip_if(purrr::is_null(landsat_cube), message = "DEAFRICA is not accessible" ) expect_true(all(sits_bands(landsat_cube) %in% c("B05", "CLOUD"))) expect_equal(nrow(landsat_cube), 6) bbox_cube <- sits_bbox(landsat_cube, as_crs = "EPSG:4326") bbox_cube_1 <- sits_bbox(.tile(landsat_cube), as_crs = "EPSG:4326") expect_true(bbox_cube["xmax"] >= bbox_cube_1["xmax"]) expect_true(bbox_cube["ymax"] >= bbox_cube_1["ymax"]) r_obj <- .raster_open_rast(landsat_cube$file_info[[1]]$path[1]) cube_nrows <- .tile_nrows(landsat_cube) expect_true(.raster_nrows(r_obj) == cube_nrows) }) test_that("Creating LS8-SR cubes from DEA", { landsat_cube <- .try( { sits_cube( source = "DEAFRICA", collection = "LS8-SR", bands = c("B05", "CLOUD"), roi = c( lon_min = 33.546, lon_max = 34.999, lat_min = 1.427, lat_max = 3.726 ), start_date = "2021-01-01", end_date = "2021-04-29", progress = FALSE ) }, .default = NULL ) testthat::skip_if(purrr::is_null(landsat_cube), message = "DEAFRICA is not accessible" ) expect_true(all(sits_bands(landsat_cube) %in% c("B05", "CLOUD"))) expect_equal(nrow(landsat_cube), 6) bbox_cube <- sits_bbox(landsat_cube, as_crs = "EPSG:4326") bbox_cube_1 <- sits_bbox(.tile(landsat_cube), as_crs = "EPSG:4326") expect_true(bbox_cube["xmax"] >= bbox_cube_1["xmax"]) expect_true(bbox_cube["ymax"] >= bbox_cube_1["ymax"]) r_obj <- .raster_open_rast(landsat_cube$file_info[[1]]$path[1]) cube_nrows <- .tile_nrows(landsat_cube) expect_true(.raster_nrows(r_obj) == cube_nrows) }) test_that("Creating LS9-SR cubes from DEA", { landsat_cube <- .try( { sits_cube( source = "DEAFRICA", collection = "LS9-SR", bands = c("B05", "CLOUD"), roi = c( lon_min = 33.546, lon_max = 34.999, lat_min = 1.427, lat_max = 3.726 ), start_date = "2022-01-01", end_date = "2022-04-01", progress = FALSE ) }, .default = NULL ) testthat::skip_if(purrr::is_null(landsat_cube), message = "DEAFRICA is not accessible" ) expect_true(all(sits_bands(landsat_cube) %in% c("B05", "CLOUD"))) expect_equal(nrow(landsat_cube), 6) bbox_cube <- sits_bbox(landsat_cube, as_crs = "EPSG:4326") bbox_cube_1 <- sits_bbox(.tile(landsat_cube), as_crs = "EPSG:4326") expect_true(bbox_cube["xmax"] >= bbox_cube_1["xmax"]) expect_true(bbox_cube["ymax"] >= bbox_cube_1["ymax"]) r_obj <- .raster_open_rast(landsat_cube$file_info[[1]]$path[1]) cube_nrows <- .tile_nrows(landsat_cube) expect_true(.raster_nrows(r_obj) == cube_nrows) }) test_that("Creating S2 cubes from DEA using ROI", { # try to create a DEA cube dea_cube <- .try( { sits_cube( source = "DEAFRICA", collection = "SENTINEL-2-L2A", bands = c("B01", "B04", "B05"), roi = c( lon_min = 17.379, lat_min = 1.1573, lon_max = 17.410, lat_max = 1.1910 ), start_date = "2019-01-01", end_date = "2019-10-28", progress = FALSE ) }, .default = NULL ) testthat::skip_if(purrr::is_null(dea_cube), message = "DEAFRICA is not accessible" ) expect_true(all(sits_bands(dea_cube) %in% c("B01", "B04", "B05"))) expect_equal(nrow(dea_cube), 1) r <- .raster_open_rast(.tile_path(dea_cube)) expect_equal(dea_cube$xmax[[1]], .raster_xmax(r), tolerance = 1) expect_equal(dea_cube$xmin[[1]], .raster_xmin(r), tolerance = 1) }) test_that("Creating S2 cubes from DEA using tiles", { dea_cube <- .try( { sits_cube( source = "DEAFRICA", collection = "SENTINEL-2-L2A", bands = c("B02", "B8A", "B11"), tiles = c("37MDT","37MET"), start_date = "2019-01-01", end_date = "2019-08-28", progress = FALSE ) }, .default = NULL ) testthat::skip_if(purrr::is_null(dea_cube), message = "DEAFRICA is not accessible" ) expect_true(all(sits_bands(dea_cube) %in% c("B02", "B8A", "B11"))) expect_equal(nrow(dea_cube), 2) r <- .raster_open_rast(.tile_path(dea_cube)) expect_equal(dea_cube$xmax[[1]], .raster_xmax(r), tolerance = 1) expect_equal(dea_cube$xmin[[1]], .raster_xmin(r), tolerance = 1) expect_true(all(dea_cube$tile %in% c("37MDT","37MET"))) }) test_that("Creating Sentinel-1 RTC cubes from DEA using ROI", { cube_s1_rtc <- .try( { sits_cube( source = "DEAFRICA", collection = "SENTINEL-1-RTC", bands = c("VV"), orbit = "descending", roi = c( lon_min = 17.379, lat_min = 1.1573, lon_max = 17.410, lat_max = 1.1910 ), start_date = "2021-07-01", end_date = "2021-09-30", progress = FALSE ) }, .default = NULL ) testthat::skip_if(purrr::is_null(cube_s1_rtc), message = "DEAFRICA is not accessible" ) expect_true(sits_bands(cube_s1_rtc) == "VV") expect_equal(nrow(cube_s1_rtc), 1) r <- .raster_open_rast(.tile_path(cube_s1_rtc)) expect_equal(cube_s1_rtc$xmax[[1]], .raster_xmax(r), tolerance = 1) expect_equal(cube_s1_rtc$xmin[[1]], .raster_xmin(r), tolerance = 1) }) test_that("Creating Sentinel-1 RTC cubes from DEA using tiles", { cube_s1_rtc <- .try( { sits_cube( source = "DEAFRICA", collection = "SENTINEL-1-RTC", bands = c("VV"), orbit = "ascending", tiles = c("36NWJ"), start_date = "2022-01-01", end_date = "2022-02-25", progress = FALSE ) }, .default = NULL ) testthat::skip_if(purrr::is_null(cube_s1_rtc), message = "DEAFRICA is not accessible" ) bbox <- sits_bbox(cube_s1_rtc) roi_cube_s1 <- sits_mgrs_to_roi(c("36NWJ")) expect_true(bbox[["xmin"]] < roi_cube_s1[["lon_min"]]) expect_true(bbox[["xmax"]] > roi_cube_s1[["lon_max"]]) expect_true(bbox[["ymin"]] < roi_cube_s1[["lat_min"]]) expect_true(bbox[["ymax"]] > roi_cube_s1[["lat_max"]]) expect_true(all(c("VV") %in% sits_bands(cube_s1_rtc))) r_obj <- .raster_open_rast(cube_s1_rtc$file_info[[1]]$path[[1]]) expect_true(terra::nrow(r_obj) == cube_s1_rtc$file_info[[1]]$nrows[[1]]) output_dir <- paste0(tempdir(), "/s1-rtc-reg") if (!dir.exists(output_dir)) { dir.create(output_dir) } cube_s1_reg <- sits_regularize( cube = cube_s1_rtc, period = "P1M", res = 240, tiles = c("36NWJ"), multicores = 1, output_dir = output_dir, progress = TRUE ) expect_equal(length(sits_timeline(cube_s1_reg)), 2) expect_true("36NWJ" %in% cube_s1_reg$tile) expect_true(all("EPSG:32636" %in% cube_s1_reg$crs)) bbox <- sits_bbox(cube_s1_reg, as_crs = "EPSG:4326") roi_cube_s1 <- sits_mgrs_to_roi("36NWJ") expect_equal(bbox[["xmin"]], roi_cube_s1[["lon_min"]], tolerance = 0.01) expect_equal(bbox[["xmax"]], roi_cube_s1[["lon_max"]], tolerance = 0.01) expect_equal(bbox[["ymin"]], roi_cube_s1[["lat_min"]], tolerance = 0.01) expect_equal(bbox[["ymax"]], roi_cube_s1[["lat_max"]], tolerance = 0.01) expect_true(all(c("VV") %in% sits_bands(cube_s1_reg))) }) test_that("Creating ALOS-PALSAR-MOSAIC cubes from DEA", { cube_alos <- .try( { sits_cube( source = "DEAFRICA", collection = "ALOS-PALSAR-MOSAIC", bands = c("HH", "HV", "CLOUD"), roi = c( lon_min = 17.379, lat_min = 1.1573, lon_max = 17.410, lat_max = 1.1910 ), start_date = "2008-01-01", end_date = "2009-01-01", progress = FALSE ) }, .default = NULL ) testthat::skip_if(purrr::is_null(cube_alos), message = "DEAFRICA is not accessible" ) expect_true(all(sits_bands(cube_alos) %in% c("HH", "HV", "CLOUD"))) expect_equal(nrow(cube_alos), 1) bbox_cube <- sits_bbox(cube_alos, as_crs = "EPSG:4326") bbox_cube_1 <- sits_bbox(.tile(cube_alos), as_crs = "EPSG:4326") expect_true(bbox_cube["xmax"] >= bbox_cube_1["xmax"]) expect_true(bbox_cube["ymax"] >= bbox_cube_1["ymax"]) r_obj <- .raster_open_rast(cube_alos$file_info[[1]]$path[1]) cube_nrows <- .tile_nrows(cube_alos) expect_true(.raster_nrows(r_obj) == cube_nrows) }) test_that("Creating NDVI-ANOMALY cubes from DEA", { cube_ndvi <- .try( { sits_cube( source = "DEAFRICA", collection = "NDVI-ANOMALY", bands = c("NDVI-MEAN"), roi = c( lon_min = 17.379, lat_min = 1.1573, lon_max = 17.410, lat_max = 1.1910 ), start_date = "2018-06-01", end_date = "2018-12-31", progress = FALSE ) }, .default = NULL ) testthat::skip_if(purrr::is_null(cube_ndvi), message = "DEAFRICA is not accessible" ) expect_true(sits_bands(cube_ndvi) == "NDVI-MEAN") expect_equal(nrow(cube_ndvi), 1) bbox_cube <- sits_bbox(cube_ndvi, as_crs = "EPSG:4326") bbox_cube_1 <- sits_bbox(.tile(cube_ndvi), as_crs = "EPSG:4326") expect_true(bbox_cube["xmax"] >= bbox_cube_1["xmax"]) expect_true(bbox_cube["ymax"] >= bbox_cube_1["ymax"]) r_obj <- .raster_open_rast(cube_ndvi$file_info[[1]]$path[1]) cube_nrows <- .tile_nrows(cube_ndvi) expect_true(.raster_nrows(r_obj) == cube_nrows) }) test_that("Creating RAINFALL-CHIRPS-DAILY cubes from DEA", { cube_chirps <- .try( { sits_cube( source = "DEAFRICA", collection = "RAINFALL-CHIRPS-DAILY", bands = c("RAINFALL"), roi = c( lon_min = 17.379, lat_min = 1.1573, lon_max = 17.410, lat_max = 1.1910 ), start_date = "2018-06-01", end_date = "2018-08-25", progress = FALSE ) }, .default = NULL ) testthat::skip_if(purrr::is_null(cube_chirps), message = "DEAFRICA is not accessible" ) expect_true(sits_bands(cube_chirps) == "RAINFALL") expect_equal(nrow(cube_chirps), 1) bbox_cube <- sits_bbox(cube_chirps, as_crs = "EPSG:4326") bbox_cube_1 <- sits_bbox(.tile(cube_chirps), as_crs = "EPSG:4326") expect_true(bbox_cube["xmax"] >= bbox_cube_1["xmax"]) expect_true(bbox_cube["ymax"] >= bbox_cube_1["ymax"]) r_obj <- .raster_open_rast(cube_chirps$file_info[[1]]$path[1]) cube_nrows <- .tile_nrows(cube_chirps) expect_true(.raster_nrows(r_obj) == cube_nrows) }) test_that("Creating RAINFALL-CHIRPS-MONTHLY cubes from DEA", { cube_chirps <- .try( { sits_cube( source = "DEAFRICA", collection = "RAINFALL-CHIRPS-MONTHLY", bands = c("RAINFALL"), roi = c( lon_min = 17.379, lat_min = 1.1573, lon_max = 17.410, lat_max = 1.1910 ), start_date = "2018-06-01", end_date = "2018-08-25", progress = FALSE ) }, .default = NULL ) testthat::skip_if(purrr::is_null(cube_chirps), message = "DEAFRICA is not accessible" ) expect_true(sits_bands(cube_chirps) == "RAINFALL") expect_equal(nrow(cube_chirps), 1) bbox_cube <- sits_bbox(cube_chirps, as_crs = "EPSG:4326") bbox_cube_1 <- sits_bbox(.tile(cube_chirps), as_crs = "EPSG:4326") expect_true(bbox_cube["xmax"] >= bbox_cube_1["xmax"]) expect_true(bbox_cube["ymax"] >= bbox_cube_1["ymax"]) r_obj <- .raster_open_rast(cube_chirps$file_info[[1]]$path[1]) cube_nrows <- .tile_nrows(cube_chirps) expect_true(.raster_nrows(r_obj) == cube_nrows) }) test_that("Creating DEM-COP-30 cubes from DEA", { cube_dem <- .try( { sits_cube( source = "DEAFRICA", collection = "DEM-COP-30", bands = c("ELEVATION"), roi = c( lon_min = 17.379, lat_min = 1.1573, lon_max = 17.410, lat_max = 1.1910 ), progress = FALSE ) }, .default = NULL ) testthat::skip_if(purrr::is_null(cube_dem), message = "DEAFRICA is not accessible" ) expect_true(sits_bands(cube_dem) == "ELEVATION") expect_equal(nrow(cube_dem), 1) bbox_cube <- sits_bbox(cube_dem, as_crs = "EPSG:4326") bbox_cube_1 <- sits_bbox(.tile(cube_dem), as_crs = "EPSG:4326") expect_true(bbox_cube["xmax"] >= bbox_cube_1["xmax"]) expect_true(bbox_cube["ymax"] >= bbox_cube_1["ymax"]) r_obj <- .raster_open_rast(cube_dem$file_info[[1]]$path[1]) cube_nrows <- .tile_nrows(cube_dem) expect_true(.raster_nrows(r_obj) == cube_nrows) })