test_that("One-year, single core classification", { # create a rfor model rfor_model <- sits_train(samples_modis_ndvi, sits_rfor()) # create a data cube from local files data_dir <- system.file("extdata/raster/mod13q1", package = "sits") cube <- sits_cube( source = "BDC", collection = "MOD13Q1-6", data_dir = data_dir, progress = FALSE ) # classify a data cube probs_cube <- sits_classify( data = cube, ml_model = rfor_model, output_dir = tempdir(), version = "var1", progress = FALSE ) # smooth the probability cube using Bayesian statistics var_cube <- sits_variance(probs_cube, output_dir = tempdir()) # check is variance cube .check_is_variance_cube(var_cube) r_obj <- .raster_open_rast(var_cube$file_info[[1]]$path[[1]]) max_lyr1 <- max(.raster_get_values(r_obj)[, 1], na.rm = TRUE) expect_true(max_lyr1 <= 4000) max_lyr3 <- max(.raster_get_values(r_obj)[, 3], na.rm = TRUE) expect_true(max_lyr3 <= 4000) p <- plot(var_cube, sample_size = 10000, labels = "Cerrado") expect_true(p$tm_raster$style == "cont") p <- plot(var_cube, sample_size = 10000, labels = "Cerrado", type = "hist") expect_true(all(p$data_labels %in% c( "Cerrado", "Forest", "Pasture", "Soy_Corn" ))) v <- p$data$variance expect_true(max(v) <= 100) expect_true(min(v) >= 0) # test Recovery out <- capture_messages({ expect_message( object = { sits_variance( cube = probs_cube, output_dir = tempdir() ) }, regexp = "Recovery" ) }) expect_true(grepl("output_dir", out[1])) expect_true(all(file.remove(unlist(probs_cube$file_info[[1]]$path)))) expect_true(all(file.remove(unlist(var_cube$file_info[[1]]$path)))) })