* using log directory ‘/home/hornik/tmp/CRAN_special_noSuggests/singleCellHaystack.Rcheck’
* using R Under development (unstable) (2025-12-04 r89091)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-15 (Debian 15.2.0-4) 15.2.0
    GNU Fortran (Debian 15.2.0-4) 15.2.0
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘singleCellHaystack/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘singleCellHaystack’ version ‘1.0.3’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/7s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘singleCellHaystack’ can be installed ... [6s/6s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/10s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [12s/12s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [11s/11s] ERROR
  Running ‘testthat.R’ [11s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(singleCellHaystack)
  > 
  > test_check("singleCellHaystack")
  Saving _problems/test-haystack_continuous-17.R
  Saving _problems/test-haystack_continuous-31.R
  Saving _problems/test-haystack_sparse-21.R
  Saving _problems/test-haystack_sparse-36.R
  Saving _problems/test-haystack_sparse-37.R
  [ FAIL 5 | WARN 0 | SKIP 0 | PASS 33 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-haystack_continuous.R:17:3'): haystack continuous highD works ──
  Expected `x$results["gene_24", "log.p.vals"]` to equal `-25.7761`.
  Differences:
  1/1 mismatches
  [1] -25.8 - -25.8 == -0.0012
  ── Failure ('test-haystack_continuous.R:31:3'): haystack continuous highD works ──
  Expected `x$results["gene_24", "log.p.vals"]` to equal `-20.65827`.
  Differences:
  1/1 mismatches
  [1] -20.6 - -20.7 == 0.0262
  ── Failure ('test-haystack_sparse.R:21:3'): haystack works ─────────────────────
  Expected `x$results["gene_1", "log.p.vals"]` to equal `-0.4574128`.
  Differences:
  1/1 mismatches
  [1] -0.455 - -0.457 == 0.00216
  ── Failure ('test-haystack_sparse.R:36:3'): haystack works ─────────────────────
  Expected `x$results["gene_1", "D_KL"]` to equal 0.2716761.
  Differences:
  1/1 mismatches
  [1] 0.281 - 0.272 == 0.00979
  ── Failure ('test-haystack_sparse.R:37:3'): haystack works ─────────────────────
  Expected `x$results["gene_1", "log.p.vals"]` to equal `-0.4350106`.
  Differences:
  1/1 mismatches
  [1] -0.47 - -0.435 == -0.0346
  
  [ FAIL 5 | WARN 0 | SKIP 0 | PASS 33 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [0s/0s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR