test_that("defSurv kicks out transition error", { skip_on_cran() expect_error(defSurv(varname = "censor", formula = "-7", shape = 0.55, transition = 150)) }) test_that("genSurv runs OK", { skip_on_cran() dS <- defSurv(varname = "event_1", formula = "-10", shape = 0.3) dS <- defSurv(dS, "event_2", "-6.5", shape = 0.4) dS <- defSurv(dS, "event_3", "-7", shape = 0.5) dd <- genData(1000) expect_equal(genSurv(dd, dS)[, .(c( median(event_1), median(event_2), median(event_3) ))][, V1], c(18, 11.6, 27.5), tolerance = .1 ) d1 <- defData(varname = "x", formula = .5, dist = "binary") dS <- defSurv(varname = "time", formula = "-14.6 - .5*x", shape = .35, transition = 0) dS <- defSurv(dS, varname = "time", formula = "-14.6 - 1.5*x", shape = .35, transition = 150) dd <- genData(1000, d1) expect_equal(genSurv(dd, dS)[x == 1, mean(time)], 213, tolerance = .1) }) test_that("genSurv throws errors", { skip_on_cran() dS <- defSurv(varname = "event_1", formula = "-10", shape = 0.3) dS <- defSurv(dS, "event_2", "-6.5", shape = 0.4) dS <- defSurv(dS, "event_3", "-7", shape = 0.5) dd <- genData(5) expect_error(genSurv(dd, dS, timeName = "event_1", keepEvents = TRUE)) expect_error(genSurv(dd, dS, timeName = "event_1", censorName = "censor")) }) test_that("addCmpRisk works", { skip_on_cran() dS <- defSurv(varname = "event_1", formula = "-10", shape = 0.3) dS <- defSurv(dS, "event_2", "-6.5", shape = 0.4) dd <- genData(5000) dd <- genSurv(dd, dS) expect_equal(addCompRisk(dd, c("event_1", "event_2"), "time")[, mean(event)], 1.8, tolerance = 0.1 ) expect_equivalent( names(addCompRisk(dd, c("event_1", "event_2"), "time")[, table(event)]), c("1", "2") ) expect_equivalent( names(addCompRisk(dd, c("event_1", "event_2"), "time", "event_2")[, table(event)]), c("0", "1") ) })