* installing *source* package 'simer' ... ** this is package 'simer' version '0.9.0.6' ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 13.3.0' g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I'D:/RCompile/CRANpkg/lib/4.5/bigmemory/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DARMA_64BIT_WORD=1 -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I'D:/RCompile/CRANpkg/lib/4.5/bigmemory/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DARMA_64BIT_WORD=1 -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c data_converter.cpp -o data_converter.o In file included from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/shared_ptr.hpp:17, from D:/RCompile/CRANpkg/lib/4.5/bigmemory/include/bigmemory/BigMatrix.h:10, from simer.h:13, from data_converter.cpp:17: D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:326:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 326 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\memory:78, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/armadillo:38, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:58, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:29, from simer.h:11: d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 354 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 365 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 423 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 430 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 432 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mpl/aux_/na_assert.hpp:23, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mpl/arg.hpp:25, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mpl/placeholders.hpp:24, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/iterator/iterator_categories.hpp:16, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/iterator/iterator_facade.hpp:13, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/range/iterator_range_core.hpp:27, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/range/iterator_range.hpp:13, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/range/as_literal.hpp:18, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/algorithm/string/trim.hpp:19, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/algorithm/string.hpp:19, from data_converter.cpp:18: D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mpl/assert.hpp: At global scope: D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/bind/mem_fn.hpp:23, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mem_fn.hpp:22, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/function/function_template.hpp:16, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/function.hpp:16, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/algorithm/string/find_iterator.hpp:24, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/algorithm/string/iter_find.hpp:27, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/algorithm/string/split.hpp:16, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/algorithm/string.hpp:23: D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I'D:/RCompile/CRANpkg/lib/4.5/bigmemory/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DARMA_64BIT_WORD=1 -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c genotype.cpp -o genotype.o In file included from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/shared_ptr.hpp:17, from D:/RCompile/CRANpkg/lib/4.5/bigmemory/include/bigmemory/BigMatrix.h:10, from simer.h:13, from genotype.cpp:1: D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:326:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 326 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\memory:78, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/armadillo:38, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:58, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:29, from simer.h:11: d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 354 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 365 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 423 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 430 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 432 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I'D:/RCompile/CRANpkg/lib/4.5/bigmemory/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DARMA_64BIT_WORD=1 -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c impute.cpp -o impute.o In file included from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/shared_ptr.hpp:17, from D:/RCompile/CRANpkg/lib/4.5/bigmemory/include/bigmemory/BigMatrix.h:10, from simer.h:13, from impute.cpp:15: D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:326:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 326 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\memory:78, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/armadillo:38, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:58, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:29, from simer.h:11: d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 354 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 365 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 423 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 430 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 432 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mpl/aux_/na_assert.hpp:23, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mpl/arg.hpp:25, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mpl/placeholders.hpp:24, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/iterator/iterator_categories.hpp:16, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/iterator/iterator_facade.hpp:13, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/range/iterator_range_core.hpp:27, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/range/iterator_range.hpp:13, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/range/as_literal.hpp:18, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/algorithm/string/trim.hpp:19, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/algorithm/string.hpp:19, from impute.cpp:16: D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mpl/assert.hpp: At global scope: D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/bind/mem_fn.hpp:23, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/mem_fn.hpp:22, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/function/function_template.hpp:16, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/function.hpp:16, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/algorithm/string/find_iterator.hpp:24, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/algorithm/string/iter_find.hpp:27, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/algorithm/string/split.hpp:16, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/algorithm/string.hpp:23: D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include' -I'D:/RCompile/CRANpkg/lib/4.5/bigmemory/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DARMA_64BIT_WORD=1 -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c pedigree.cpp -o pedigree.o In file included from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/shared_ptr.hpp:17, from D:/RCompile/CRANpkg/lib/4.5/bigmemory/include/bigmemory/BigMatrix.h:10, from simer.h:13, from pedigree.cpp:1: D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/detail/shared_count.hpp:326:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 326 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\memory:78, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/armadillo:38, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:58, from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:29, from simer.h:11: d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 354 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 365 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 423 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 430 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)': D:/RCompile/CRANpkg/lib/4.5/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 432 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ d:\rtools44\x86_64-w64-mingw32.static.posix\lib\gcc\x86_64-w64-mingw32.static.posix\13.3.0\include\c++\bits\unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ g++ -std=gnu++17 -shared -s -static-libgcc -o simer.dll tmp.def RcppExports.o data_converter.o genotype.o impute.o pedigree.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-simer/00new/simer/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simer)