* installing *source* package ‘simer’ ...
** this is package ‘simer’ version ‘0.9.0.6’
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/bigmemory/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD=1 -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/bigmemory/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD=1 -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c data_converter.cpp -o data_converter.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/bigmemory/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD=1 -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c genotype.cpp -o genotype.o
genotype.cpp:236:77: error: non-const lvalue reference to type 'Nullable<IntegerVector>' (aka 'Nullable<Vector<13>>') cannot bind to a value of unrelated type 'SEXP' (aka 'SEXPREC *')
  236 | List GenoFilter(XPtr<BigMatrix> pMat, double NA_C, Nullable<IntegerVector> &keepIndsNull=R_NilValue, Nullable<double> filterGeno=R_NilValue, Nullable<double> filterHWE=R_NilValue, Nullable<double> filterMind=R_NilValue, Nullable<double> filterMAF=R_NilValue, int threads=0, bool verbose=true) {
      |                                                                             ^            ~~~~~~~~~~
genotype.cpp:236:77: note: passing argument to parameter 'keepIndsNull' here
genotype.cpp:341:12: error: 'GenoFilter' does not name a template but is followed by template arguments
  341 |     return GenoFilter<char>(xpMat, NA_CHAR, keepIndsNull, filterGeno, filterHWE, filterMind, filterMAF, threads, verbose);
      |            ^         ~~~~~~
genotype.cpp:336:6: note: non-template declaration found by name lookup
  336 | List GenoFilter(const SEXP pBigMat, Nullable<IntegerVector> keepIndsNull=R_NilValue, Nullable<double> filterGeno=R_NilValue, Nullable<double> filterHWE=R_NilValue, Nullable<double> filterMind=R_NilValue, Nullable<double> filterMAF=R_NilValue, int threads=0, bool verbose=true) {
      |      ^
genotype.cpp:343:12: error: 'GenoFilter' does not name a template but is followed by template arguments
  343 |     return GenoFilter<short>(xpMat, NA_SHORT, keepIndsNull, filterGeno, filterHWE, filterMind, filterMAF, threads, verbose);
      |            ^         ~~~~~~~
genotype.cpp:336:6: note: non-template declaration found by name lookup
  336 | List GenoFilter(const SEXP pBigMat, Nullable<IntegerVector> keepIndsNull=R_NilValue, Nullable<double> filterGeno=R_NilValue, Nullable<double> filterHWE=R_NilValue, Nullable<double> filterMind=R_NilValue, Nullable<double> filterMAF=R_NilValue, int threads=0, bool verbose=true) {
      |      ^
genotype.cpp:345:12: error: 'GenoFilter' does not name a template but is followed by template arguments
  345 |     return GenoFilter<int>(xpMat, NA_INTEGER, keepIndsNull, filterGeno, filterHWE, filterMind, filterMAF, threads, verbose);
      |            ^         ~~~~~
genotype.cpp:336:6: note: non-template declaration found by name lookup
  336 | List GenoFilter(const SEXP pBigMat, Nullable<IntegerVector> keepIndsNull=R_NilValue, Nullable<double> filterGeno=R_NilValue, Nullable<double> filterHWE=R_NilValue, Nullable<double> filterMind=R_NilValue, Nullable<double> filterMAF=R_NilValue, int threads=0, bool verbose=true) {
      |      ^
genotype.cpp:347:12: error: 'GenoFilter' does not name a template but is followed by template arguments
  347 |     return GenoFilter<double>(xpMat, NA_REAL, keepIndsNull, filterGeno, filterHWE, filterMind, filterMAF, threads, verbose);
      |            ^         ~~~~~~~~
genotype.cpp:336:6: note: non-template declaration found by name lookup
  336 | List GenoFilter(const SEXP pBigMat, Nullable<IntegerVector> keepIndsNull=R_NilValue, Nullable<double> filterGeno=R_NilValue, Nullable<double> filterHWE=R_NilValue, Nullable<double> filterMind=R_NilValue, Nullable<double> filterMAF=R_NilValue, int threads=0, bool verbose=true) {
      |      ^
genotype.cpp:354:84: error: non-const lvalue reference to type 'Nullable<IntegerVector>' (aka 'Nullable<Vector<13>>') cannot bind to a value of unrelated type 'SEXP' (aka 'SEXPREC *')
  354 | void Mat2BigMat(XPtr<BigMatrix> pMat, IntegerMatrix &mat, Nullable<IntegerVector> &indIdxNull=R_NilValue, int op=1, int threads=0) {
      |                                                                                    ^          ~~~~~~~~~~
genotype.cpp:354:84: note: passing argument to parameter 'indIdxNull' here
genotype.cpp:394:12: error: 'Mat2BigMat' does not name a template but is followed by template arguments
  394 |     return Mat2BigMat<char>(xpMat, mat, indIdxNull, op, threads);
      |            ^         ~~~~~~
genotype.cpp:389:6: note: non-template declaration found by name lookup
  389 | void Mat2BigMat(const SEXP pBigMat, IntegerMatrix &mat, Nullable<IntegerVector> indIdxNull=R_NilValue, int op=1, int threads=0) {
      |      ^
genotype.cpp:396:12: error: 'Mat2BigMat' does not name a template but is followed by template arguments
  396 |     return Mat2BigMat<short>(xpMat, mat, indIdxNull, op, threads);
      |            ^         ~~~~~~~
genotype.cpp:389:6: note: non-template declaration found by name lookup
  389 | void Mat2BigMat(const SEXP pBigMat, IntegerMatrix &mat, Nullable<IntegerVector> indIdxNull=R_NilValue, int op=1, int threads=0) {
      |      ^
genotype.cpp:398:12: error: 'Mat2BigMat' does not name a template but is followed by template arguments
  398 |     return Mat2BigMat<int>(xpMat, mat, indIdxNull, op, threads);
      |            ^         ~~~~~
genotype.cpp:389:6: note: non-template declaration found by name lookup
  389 | void Mat2BigMat(const SEXP pBigMat, IntegerMatrix &mat, Nullable<IntegerVector> indIdxNull=R_NilValue, int op=1, int threads=0) {
      |      ^
genotype.cpp:400:12: error: 'Mat2BigMat' does not name a template but is followed by template arguments
  400 |     return Mat2BigMat<double>(xpMat, mat, indIdxNull, op, threads);
      |            ^         ~~~~~~~~
genotype.cpp:389:6: note: non-template declaration found by name lookup
  389 | void Mat2BigMat(const SEXP pBigMat, IntegerMatrix &mat, Nullable<IntegerVector> indIdxNull=R_NilValue, int op=1, int threads=0) {
      |      ^
genotype.cpp:407:89: error: non-const lvalue reference to type 'Nullable<IntegerVector>' (aka 'Nullable<Vector<13>>') cannot bind to a value of unrelated type 'SEXP' (aka 'SEXPREC *')
  407 | void BigMat2BigMat(XPtr<BigMatrix> pMat, XPtr<BigMatrix> pmat, Nullable<IntegerVector> &indIdxNull=R_NilValue, int op=1, int threads=0) {
      |                                                                                         ^          ~~~~~~~~~~
genotype.cpp:407:89: note: passing argument to parameter 'indIdxNull' here
genotype.cpp:459:12: error: 'BigMat2BigMat' does not name a template but is followed by template arguments
  459 |     return BigMat2BigMat<char>(xpMat, xpmat, indIdxNull, op, threads);
      |            ^            ~~~~~~
genotype.cpp:453:6: note: non-template declaration found by name lookup
  453 | void BigMat2BigMat(const SEXP pBigMat, const SEXP pBigmat, Nullable<IntegerVector> indIdxNull=R_NilValue, int op=1, int threads=0) {
      |      ^
genotype.cpp:461:12: error: 'BigMat2BigMat' does not name a template but is followed by template arguments
  461 |     return BigMat2BigMat<short>(xpMat, xpmat, indIdxNull, op, threads);
      |            ^            ~~~~~~~
genotype.cpp:453:6: note: non-template declaration found by name lookup
  453 | void BigMat2BigMat(const SEXP pBigMat, const SEXP pBigmat, Nullable<IntegerVector> indIdxNull=R_NilValue, int op=1, int threads=0) {
      |      ^
genotype.cpp:463:12: error: 'BigMat2BigMat' does not name a template but is followed by template arguments
  463 |     return BigMat2BigMat<int>(xpMat, xpmat, indIdxNull, op, threads);
      |            ^            ~~~~~
genotype.cpp:453:6: note: non-template declaration found by name lookup
  453 | void BigMat2BigMat(const SEXP pBigMat, const SEXP pBigmat, Nullable<IntegerVector> indIdxNull=R_NilValue, int op=1, int threads=0) {
      |      ^
genotype.cpp:465:12: error: 'BigMat2BigMat' does not name a template but is followed by template arguments
  465 |     return BigMat2BigMat<double>(xpMat, xpmat, indIdxNull, op, threads);
      |            ^            ~~~~~~~~
genotype.cpp:453:6: note: non-template declaration found by name lookup
  453 | void BigMat2BigMat(const SEXP pBigMat, const SEXP pBigmat, Nullable<IntegerVector> indIdxNull=R_NilValue, int op=1, int threads=0) {
      |      ^
15 errors generated.
make: *** [/home/hornik/tmp/R/etc/Makeconf:208: genotype.o] Error 1
ERROR: compilation failed for package ‘simer’
* removing ‘/srv/hornik/tmp/CRAN_pretest/simer.Rcheck/simer’