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Type 'q()' to quit R. > library(simDAG) > library(testthat) > library(data.table) > library(igraph) Attaching package: 'igraph' The following object is masked from 'package:testthat': compare The following objects are masked from 'package:stats': decompose, spectrum The following object is masked from 'package:base': union > > test_check("simDAG") Loading required namespace: Rfast Loading required namespace: MASS Loading required namespace: ggplot2 Loading required namespace: ggforce t = 1 node = sickness2 t = 1 node = sickness1 t = 2 node = sickness2 t = 2 node = sickness1 t = 3 node = sickness2 t = 3 node = sickness1 t = 4 node = sickness2 t = 4 node = sickness1 t = 5 node = sickness2 t = 5 node = sickness1 Loading required namespace: doSNOW Loading required namespace: doRNG starting worker pid=39508 on localhost:11059 at 13:27:18.167 starting worker pid=157536 on localhost:11059 at 13:27:18.185 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Loading required package: Rcpp Loading required package: RcppZiggurat Loading required package: RcppParallel Attaching package: 'RcppParallel' The following object is masked from 'package:Rcpp': LdFlags Rfast: 2.1.0 ___ __ __ __ __ __ __ __ __ __ _ _ __ __ __ __ __ __ __ __ __ __ __ | __ __ __ __ | | __ __ __ __ _/ / \ | __ __ __ __ / /__ __ _ _ __ __\ | | | | | | / _ \ | | / / | | | | | | / / \ \ | | / / | | | | | | / / \ \ | | / / | |__ __ __ __| | | |__ __ __ __ / / \ \ | |__ __ __ __ _ / /__/\ | __ __ __ __| | __ __ __ __| / /__ _ __\ \ |_ __ __ __ _ | / ___ / | \ | | / _ _ _ _ _ _ \ | | \/ / / | |\ \ | | / / \ \ | | / / | | \ \ | | / / \ \ | | / / | | \ \ | | / / \ \ | | / / | | \ \__ __ _ | | / / \ \ _ __ __ __ _| | / / |_| \__ __ __\ |_| /_/ \_\ /_ __ __ __ ___| \/ team Attaching package: 'Rfast' The following object is masked from 'package:data.table': transpose Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Loading required package: Rcpp Loading required package: RcppZiggurat Loading required package: RcppParallel Attaching package: 'RcppParallel' The following object is masked from 'package:Rcpp': LdFlags Rfast: 2.1.0 ___ __ __ __ __ __ __ __ __ __ _ _ __ __ __ __ __ __ __ __ __ __ __ | __ __ __ __ | | __ __ __ __ _/ / \ | __ __ __ __ / /__ __ _ _ __ __\ | | | | | | / _ \ | | / / | | | | | | / / \ \ | | / / | | | | | | / / \ \ | | / / | |__ __ __ __| | | |__ __ __ __ / / \ \ | |__ __ __ __ _ / /__/\ | __ __ __ __| | __ __ __ __| / /__ _ __\ \ |_ __ __ __ _ | / ___ / | \ | | / _ _ _ _ _ _ \ | | \/ / / | |\ \ | | / / \ \ | | / / | | \ \ | | / / \ \ | | / / | | \ \ | | / / \ \ | | / / | | \ \__ __ _ | | / / \ \ _ __ __ __ _| | / / |_| \__ __ __\ |_| /_/ \_\ /_ __ __ __ ___| \/ team Attaching package: 'Rfast' The following object is masked from 'package:data.table': transpose Loading required package: foreach Loading required package: rngtools | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100%starting worker pid=107480 on localhost:11059 at 13:27:20.727 starting worker pid=84416 on localhost:11059 at 13:27:20.729 Loading required package: simDAG loaded simDAG and set parent environment Loading required package: Rcpp Loading required package: RcppZiggurat Loading required package: RcppParallel Attaching package: 'RcppParallel' The following object is masked from 'package:Rcpp': LdFlags Rfast: 2.1.0 ___ __ __ __ __ __ __ __ __ __ _ _ __ __ __ __ __ __ __ __ __ __ __ | __ __ __ __ | | __ __ __ __ _/ / \ | __ __ __ __ / /__ __ _ _ __ __\ | | | | | | / _ \ | | / / | | | | | | / / \ \ | | / / | | | | | | / / \ \ | | / / | |__ __ __ __| | | |__ __ __ __ / / \ \ | |__ __ __ __ _ / /__/\ | __ __ __ __| | __ __ __ __| / /__ _ __\ \ |_ __ __ __ _ | / ___ / | \ | | / _ _ _ _ _ _ \ | | \/ / / | |\ \ | | / / \ \ | | / / | | \ \ | | / / \ \ | | / / | | \ \ | | / / \ \ | | / / | | \ \__ __ _ | | / / \ \ _ __ __ __ _| | / / |_| \__ __ __\ |_| /_/ \_\ /_ __ __ __ ___| \/ team Attaching package: 'Rfast' The following object is masked from 'package:data.table': transpose Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Loading required package: Rcpp Loading required package: RcppZiggurat Loading required package: RcppParallel Attaching package: 'RcppParallel' The following object is masked from 'package:Rcpp': LdFlags Rfast: 2.1.0 ___ __ __ __ __ __ __ __ __ __ _ _ __ __ __ __ __ __ __ __ __ __ __ | __ __ __ __ | | __ __ __ __ _/ / \ | __ __ __ __ / /__ __ _ _ __ __\ | | | | | | / _ \ | | / / | | | | | | / / \ \ | | / / | | | | | | / / \ \ | | / / | |__ __ __ __| | | |__ __ __ __ / / \ \ | |__ __ __ __ _ / /__/\ | __ __ __ __| | __ __ __ __| / /__ _ __\ \ |_ __ __ __ _ | / ___ / | \ | | / _ _ _ _ _ _ \ | | \/ / / | |\ \ | | / / \ \ | | / / | | \ \ | | / / \ \ | | / / | | \ \ | | / / \ \ | | / / | | \ \__ __ _ | | / / \ \ _ __ __ __ _| | / / |_| \__ __ __\ |_| /_/ \_\ /_ __ __ __ ___| \/ team Attaching package: 'Rfast' The following object is masked from 'package:data.table': transpose Loading required package: foreach Loading required package: rngtools starting worker pid=160648 on localhost:11059 at 13:27:22.609 starting worker pid=51244 on localhost:11059 at 13:27:22.643 Loading required package: simDAG loaded simDAG and set parent environment Loading required package: Rcpp Loading required package: RcppZiggurat Loading required package: RcppParallel Attaching package: 'RcppParallel' The following object is masked from 'package:Rcpp': LdFlags Rfast: 2.1.0 ___ __ __ __ __ __ __ __ __ __ _ _ __ __ __ __ __ __ __ __ __ __ __ | __ __ __ __ | | __ __ __ __ _/ / \ | __ __ __ __ / /__ __ _ _ __ __\ | | | | | | / _ \ | | / / | | | | | | / / \ \ | | / / | | | | | | / / \ \ | | / / | |__ __ __ __| | | |__ __ __ __ / / \ \ | |__ __ __ __ _ / /__/\ | __ __ __ __| | __ __ __ __| / /__ _ __\ \ |_ __ __ __ _ | / ___ / | \ | | / _ _ _ _ _ _ \ | | \/ / / | |\ \ | | / / \ \ | | / / | | \ \ | | / / \ \ | | / / | | \ \ | | / / \ \ | | / / | | \ \__ __ _ | | / / \ \ _ __ __ __ _| | / / |_| \__ __ __\ |_| /_/ \_\ /_ __ __ __ ___| \/ team Attaching package: 'Rfast' The following object is masked from 'package:data.table': transpose Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Loading required package: Rcpp Loading required package: RcppZiggurat Loading required package: RcppParallel Attaching package: 'RcppParallel' The following object is masked from 'package:Rcpp': LdFlags Rfast: 2.1.0 ___ __ __ __ __ __ __ __ __ __ _ _ __ __ __ __ __ __ __ __ __ __ __ | __ __ __ __ | | __ __ __ __ _/ / \ | __ __ __ __ / /__ __ _ _ __ __\ | | | | | | / _ \ | | / / | | | | | | / / \ \ | | / / | | | | | | / / \ \ | | / / | |__ __ __ __| | | |__ __ __ __ / / \ \ | |__ __ __ __ _ / /__/\ | __ __ __ __| | __ __ __ __| / /__ _ __\ \ |_ __ __ __ _ | / ___ / | \ | | / _ _ _ _ _ _ \ | | \/ / / | |\ \ | | / / \ \ | | / / | | \ \ | | / / \ \ | | / / | | \ \ | | / / \ \ | | / / | | \ \__ __ _ | | / / \ \ _ __ __ __ _| | / / |_| \__ __ __\ |_| /_/ \_\ /_ __ __ __ ___| \/ team Attaching package: 'Rfast' The following object is masked from 'package:data.table': transpose Loading required package: foreach Loading required package: rngtools [ FAIL 2 | WARN 14 | SKIP 43 | PASS 563 ] ══ Skipped tests (43) ══════════════════════════════════════════════════════════ • On CRAN (43): 'test_DAG.node_S3.r:6:3', 'test_DAG.node_S3.r:11:3', 'test_DAG.node_S3.r:16:3', 'test_DAG.node_S3.r:21:3', 'test_DAG.node_S3.r:27:3', 'test_DAG.node_S3.r:34:3', 'test_DAG.node_S3.r:39:3', 'test_DAG.node_S3.r:44:3', 'test_DAG.node_S3.r:49:3', 'test_DAG.node_S3.r:55:3', 'test_dag.r:17:3', 'test_dag.r:30:3', 'test_dag.r:37:3', 'test_dag.r:50:3', 'test_dag.r:66:3', 'test_node.r:519:3', 'test_plot.DAG.r:12:3', 'test_plot.DAG.r:16:3', 'test_plot.DAG.r:20:3', 'test_plot.DAG.r:24:3', 'test_plot.DAG.r:28:3', 'test_plot.DAG.r:32:3', 'test_plot.DAG.r:36:3', 'test_plot.DAG.r:41:3', 'test_plot.DAG.r:45:3', 'test_plot.DAG.r:53:3', 'test_plot.DAG.r:60:3', 'test_plot.DAG.r:65:3', 'test_plot.DAG.r:70:3', 'test_plot.DAG.r:101:3', 'test_plot.DAG.r:105:3', 'test_plot.DAG.r:109:3', 'test_plot.simDT.r:25:3', 'test_plot.simDT.r:29:3', 'test_plot.simDT.r:33:3', 'test_plot.simDT.r:37:3', 'test_plot.simDT.r:41:3', 'test_plot.simDT.r:49:3', 'test_plot.simDT.r:57:3', 'test_simDT_S3.r:12:3', 'test_simDT_S3.r:17:3', 'test_simDT_S3.r:22:3', 'test_simDT_S3.r:26:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_sim_discrete_time.r:290:3'): helpful error message formula error ── Error: An error occured when interpreting the formula of node 'B'. The message was: Error: Error in `[.data.table`(mod_mat, , args$parents, with = FALSE): column(s) not found: [A, C] This error may occur when one of the terms in a supplied formula does not match any variables in the generated data. Please check whether all terms in your supplied formula occur in the data generated up to this point. The variables currently available in data are: (Intercept), ATRUE, B, .id Backtrace: ▆ 1. ├─testthat::expect_error(...) at test_sim_discrete_time.r:290:3 2. │ └─testthat:::expect_condition_matching(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─simDAG::sim_discrete_time(dag, n_sim = 100, max_t = 3) 8. └─base::tryCatch(...) 9. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 10. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11. └─value[[3L]](cond) ── Error ('test_sim_from_dag.r:128:3'): helpful error message formula error ──── Error: An error occured when interpreting the formula of node 'B'. The message was: Error: Error in `[.data.table`(mod_mat, , args$parents, with = FALSE): column(s) not found: [A, C] This error may occur when one of the terms in a supplied formula does not match any variables in the generated data. Please check whether all terms in your supplied formula occur in the data generated up to this point. The variables currently available in data are: (Intercept), ATRUE Backtrace: ▆ 1. ├─testthat::expect_error(...) at test_sim_from_dag.r:128:3 2. │ └─testthat:::expect_condition_matching(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─simDAG::sim_from_dag(dag, n_sim = 100) 8. └─base::tryCatch(...) 9. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 10. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11. └─value[[3L]](cond) [ FAIL 2 | WARN 14 | SKIP 43 | PASS 563 ] Error: Test failures Execution halted