* using log directory ‘/srv/hornik/tmp/CRAN_pretest/siera.Rcheck’
* using R Under development (unstable) (2024-12-17 r87446)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘siera/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘siera’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Malan Bosman <malanbos@gmail.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  ARDs (11:59)
  ARS (3:51, 8:70, 10:26)
  CDISC (8:14)
  siera (10:11)

Found the following (possibly) invalid URLs:
  URL: https://clymbclinical.github.io/siera/
    From: DESCRIPTION
    Status: 404
    Message: Not Found
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘siera’ can be installed ... [1s/1s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s/3s] NOTE
readARS: no visible binding for global variable ‘value’
readARS: no visible binding for global variable ‘analysisId’
readARS: no visible binding for global variable ‘id’
readARS: no visible binding for global variable ‘level’
readARS: no visible binding for global variable ‘resultsByGroup’
readARS: no visible binding for global variable ‘groupingId’
readARS: no visible binding for global variable
  ‘referencedOperationRelationshipId’
readARS: no visible binding for global variable ‘operationId’
readARS: no visible binding for global variable ‘description’
readARS: no visible binding for global variable
  ‘referencedOperationRole’
readARS: no visible binding for global variable ‘outputId’
readARS: no visible binding for global variable ‘condition_dataset’
readARS: no visible binding for global variable ‘condition_variable’
readARS: no visible binding for global variable ‘condition_comparator’
readARS: no visible binding for global variable ‘condition_value’
readARS: no visible binding for global variable ‘label’
readARS: no visible binding for global variable ‘groupingVariable’
readARS: no visible binding for global variable ‘name’
readARS: no visible binding for global variable
  ‘compoundExpression_logicalOperator’
readARS: no visible binding for global variable ‘rFilt_1’
readARS: no visible binding for global variable ‘rFilt_2’
readARS: multiple local function definitions for
  ‘func_AnalysisGrouping’ with different formal arguments
readARS: multiple local function definitions for ‘func_AnalysisSet’
  with different formal arguments
readARS: multiple local function definitions for ‘func_DataSubset’ with
  different formal arguments
readARS: multiple local function definitions for ‘func_OperationTmp’
  with different formal arguments
Undefined global functions or variables:
  analysisId compoundExpression_logicalOperator condition_comparator
  condition_dataset condition_value condition_variable description
  groupingId groupingVariable id label level name operationId outputId
  rFilt_1 rFilt_2 referencedOperationRelationshipId
  referencedOperationRole resultsByGroup value
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [1s/1s] OK
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs