* using log directory 'd:/RCompile/CRANincoming/R-devel/shinySbm.Rcheck' * using R Under development (unstable) (2023-07-04 r84639 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.2.0 GNU Fortran (GCC) 12.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'shinySbm/DESCRIPTION' ... OK * this is package 'shinySbm' version '0.1.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Theodore VANRENTERGHEM ' New submission Possibly misspelled words in DESCRIPTION: sbm (6:66, 8:19) Found the following (possibly) invalid file URI: URI: shiny.sbm.dev@gmail.com From: README.md The Title field should be in title case. Current version is: 'Shiny application to use the Stochastic Block Model' In title case that is: 'Shiny Application to Use the Stochastic Block Model' The Description field should not start with the package name, 'This package' or similar. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'shinySbm' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... NOTE Maintainer field differs from that derived from Authors@R Maintainer: 'Theodore VANRENTERGHEM ' Authors@R: 'Theodore VANRENTERGHEM ' * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... NOTE Apparent methods for exported generics not registered: is.bipartite.sbmMatrix See section 'Registering S3 methods' in the 'Writing R Extensions' manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [14s] NOTE ICL_plot: no visible binding for global variable 'nbBlocks' ICL_plot: no visible binding for global variable 'ICL' ICL_plot: no visible binding for global variable 'loglik' ICL_plot: no visible global function definition for 'setNames' default_threshold : : no visible binding for global variable 'value' default_threshold: no visible binding for global variable 'block' default_threshold: no visible binding for global variable 'value' edges_to_adjacency: no visible binding for global variable 'from' edges_to_adjacency: no visible binding for global variable 'to' flexBlockProp: no visible global function definition for 'setNames' flexConnect: no visible global function definition for 'setNames' flexConnect: no visible binding for global variable '.' flexStoredModels: no visible binding for global variable 'indexModel' flexStoredModels: no visible binding for global variable 'nbParams' flexStoredModels: no visible global function definition for 'everything' getBlocks.BipartiteSBM_fit: no visible global function definition for 'setNames' getBlocks.SimpleSBM_fit: no visible global function definition for 'setNames' get_graph.BipartiteSBM_fit: no visible global function definition for 'setNames' get_graph.BipartiteSBM_fit: no visible binding for global variable '.' get_graph.BipartiteSBM_fit: no visible binding for global variable 'group' get_graph.BipartiteSBM_fit: no visible binding for global variable 'label' get_graph.BipartiteSBM_fit: no visible binding for global variable 'level' get_graph.BipartiteSBM_fit: no visible binding for global variable 'value' get_graph.BipartiteSBM_fit: no visible binding for global variable 'Nodes_names' get_graph.SimpleSBM_fit: no visible binding for global variable 'Blocks' get_graph.SimpleSBM_fit: no visible binding for global variable 'label' get_graph.SimpleSBM_fit: no visible binding for global variable 'Nodes_names' get_graph.SimpleSBM_fit: no visible binding for global variable '.' get_graph.matrix: no visible binding for global variable 'nodes_names' get_graph.matrix: no visible global function definition for 'var' get_graph.matrix: no visible binding for global variable '.' graph_filter: no visible binding for global variable 'value' mod_tab_extraction_server : : : no visible global function definition for 'write.csv2' mod_tab_network_server : : no visible global function definition for 'setNames' mod_tab_show_server : : no visible global function definition for 'png' mod_tab_show_server : : no visible global function definition for 'dev.off' mod_tab_show_server : : : no visible global function definition for 'svg' mod_tab_show_server : : : no visible global function definition for 'jpeg' mod_tab_show_server : : : no visible global function definition for 'png' mod_tab_show_server : : : no visible global function definition for 'dev.off' mod_tab_upload_server : : no visible global function definition for 'read.table' plotSbm.BipartiteSBM_fit: no visible global function definition for 'setNames' plotSbm.BipartiteSBM_fit: no visible binding for global variable 'Var2' plotSbm.BipartiteSBM_fit: no visible binding for global variable 'Var1' plotSbm.BipartiteSBM_fit: no visible binding for global variable 'base_value' plotSbm.BipartiteSBM_fit: no visible binding for global variable 'value' plotSbm.matrix: no visible binding for global variable 'Var2' plotSbm.matrix: no visible binding for global variable 'Var1' plotSbm.matrix: no visible binding for global variable 'value' visSbm.BipartiteSBM_fit: no visible binding for global variable 'level' visSbm.BipartiteSBM_fit: no visible binding for global variable 'value' Undefined global functions or variables: . Blocks ICL Nodes_names Var1 Var2 base_value block dev.off everything from group indexModel jpeg label level loglik nbBlocks nbParams nodes_names png read.table setNames svg to value var write.csv2 Consider adding importFrom("grDevices", "dev.off", "jpeg", "png", "svg") importFrom("stats", "setNames", "var") importFrom("utils", "read.table", "write.csv2") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [16s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK Running 'spelling.R' Running 'testthat.R' * checking PDF version of manual ... [22s] OK * checking HTML version of manual ... OK * DONE Status: 4 NOTEs