context("hydOrder") ## tests library(aqp, quietly = TRUE) suppressWarnings(library(cluster, quietly = TRUE)) suppressWarnings(library(dendextend, quietly = TRUE)) suppressWarnings(library(latticeExtra, quietly = TRUE)) test_that("hydOrder works as expected", { # use local data data("OSDexamples") # ensure that SPC and geomorph prop mat share a common set of IDs o <- reconcileOSDGeomorph(OSDexamples, 'hillpos') # no clustering res <- hydOrder(o$geom, g = 'hillpos', clust = FALSE) # result should be a character vector expect_true(inherits(res, 'character')) # should be same length of input SPC expect_true( length(o$SPC) == length(res) ) # with clustering res <- hydOrder(o$geom, g = 'hillpos', clust = TRUE) # result should be a list expect_true(inherits(res, 'list')) # clustering object expect_true(inherits(res$clust, 'hclust')) # should be same length of input SPC expect_true( length(o$SPC) == length(res$hyd.order) ) expect_true( length(o$SPC) == length(res$clust.hyd.order) ) })