downloading reverse dependencies ... downloading LSAMBA_2024.1.0.tar.gz ... ok installing dependencies ‘fake’, ‘rCOSA’, ‘RCy3’, ‘Rsmlx’, ‘sgPLS’, ‘sharp’, ‘sparcl’ Warning: package ‘rCOSA’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘pbdZMQ’, ‘IRkernel’ begin installing package ‘pbdZMQ’ begin installing package ‘fake’ begin installing package ‘sgPLS’ begin installing package ‘sparcl’ begin installing package ‘Rsmlx’ * installing *source* package ‘sparcl’ ... ** this is package ‘sparcl’ version ‘1.0.4’ ** package ‘sparcl’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNzJCnO/R.INSTALL4b90e1ad8ed51/sparcl/src' gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c distfun.f -o distfun.o distfun.f:13:5: 13 | 23005 continue | 1 Warning: Label 23005 at (1) defined but not used [-Wunused-label] distfun.f:15:5: 15 | 23003 continue | 1 Warning: Label 23003 at (1) defined but not used [-Wunused-label] distfun.f:17:5: 17 | 23001 continue | 1 Warning: Label 23001 at (1) defined but not used [-Wunused-label] gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c multfun.f -o multfun.o multfun.f:13:5: 13 | 23005 continue | 1 Warning: Label 23005 at (1) defined but not used [-Wunused-label] multfun.f:15:5: 15 | 23003 continue | 1 Warning: Label 23003 at (1) defined but not used [-Wunused-label] multfun.f:17:5: 17 | 23001 continue | 1 Warning: Label 23001 at (1) defined but not used [-Wunused-label] gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o sparcl.so distfun.o multfun.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNzJCnO/R.INSTALL4b90e1ad8ed51/sparcl/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-sparcl/00new/sparcl/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparcl) * installing *source* package ‘fake’ ... ** this is package ‘fake’ version ‘1.4.0’ ** package ‘fake’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fake) begin installing package ‘sharp’ * installing *source* package ‘pbdZMQ’ ... ** this is package ‘pbdZMQ’ version ‘0.3-14’ ** package ‘pbdZMQ’ successfully unpacked and MD5 sums checked ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.25... yes checking for zmq... yes checking for zmq_4_1_6... checking for zmq... yes ****************** Results of pbdZMQ package configure ***************** >> GET_PKG_CONFIG = yes >> GET_SYSTEM_ZMQ = yes >> GET_SYSTEM_ZMQ_430 = yes >> PKG_CONFIG = /usr/bin/pkg-config >> SYSTEM_ZMQ_INCLUDEDIR = /usr/include >> SYSTEM_ZMQ_LIBDIR = /usr/lib/x86_64-linux-gnu >> ENABLE_INTERNAL_ZMQ = no >> INTERNAL_ZMQ_INCLUDEDIR = ./zmqsrc/include >> INTERNAL_ZMQ_LIBDIR = ./ >> EXTERNAL_ZMQ_INCLUDE = >> EXTERNAL_ZMQ_LDFLAGS = >> ZMQ_INCLUDE = -I/usr/include >> ZMQ_LDFLAGS = -L/usr/lib/x86_64-linux-gnu -lzmq >> EXT_LIBS = >> ZMQ_POLLER = select ************************************************************************ configure: creating ./config.status config.status: creating src/Makevars configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/build_zmq configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/build_zmq config.status: creating R/zzz.r ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAKNT9N/R.INSTALL4b90969c57736/pbdZMQ/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_context.c -o R_zmq_context.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_socket.c -o R_zmq_socket.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_sendrecv.c -o R_zmq_sendrecv.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_utility.c -o R_zmq_utility.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_message.c -o R_zmq_message.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_transfer.c -o R_zmq_transfer.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c shellexec_wcc.c -o shellexec_wcc.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_poll.c -o R_zmq_poll.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -pedantic -mtune=native -c R_cxx_dummy.cc -o R_cxx_dummy.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zzz.c -o zzz.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o pbdZMQ.so R_zmq_context.o R_zmq_socket.o R_zmq_sendrecv.o R_zmq_utility.o R_zmq_message.o R_zmq_transfer.o shellexec_wcc.o R_zmq_poll.o R_cxx_dummy.o zzz.o -L/usr/lib/x86_64-linux-gnu -lzmq -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAKNT9N/R.INSTALL4b90969c57736/pbdZMQ/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pbdZMQ/00new/pbdZMQ ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pbdZMQ) begin installing package ‘IRkernel’ * installing *source* package ‘IRkernel’ ... ** this is package ‘IRkernel’ version ‘1.3.2’ ** package ‘IRkernel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IRkernel) begin installing package ‘RCy3’ * installing *source* package ‘sgPLS’ ... ** this is package ‘sgPLS’ version ‘1.8’ ** package ‘sgPLS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sgPLS) * installing *source* package ‘Rsmlx’ ... ** this is package ‘Rsmlx’ version ‘2024.1.0’ ** package ‘Rsmlx’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rsmlx) * installing *source* package ‘sharp’ ... ** this is package ‘sharp’ version ‘1.4.8’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sharp) * installing *source* package ‘RCy3’ ... ** this is package ‘RCy3’ version ‘2.28.1’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RCy3) checking sharp_1.4.8.tar.gz ... checking LSAMBA_2024.1.0.tar.gz ... Depends: Package: sharp Depends: fake (>= 1.4.0), R (>= 3.5) Imports: abind, beepr, future, future.apply, glassoFast (>= 1.0.0), glmnet, grDevices, igraph, mclust, nloptr, plotrix, Rdpack, withr (>= 2.4.0) Timings: user system elapsed sharp 76.112 4.63 82.121 Results: Check status summary: OK Source packages 1 Reverse depends 1 Check results summary: sharp ... OK rdepends_LSAMBA ... OK