Package check result: NOTE Check: CRAN incoming feasibility, Result: NOTE Maintainer: ‘Martin Jullum ’ Size of tarball: 5082684 bytes Changes to worse in reverse depends: Package: PPtreeregViz Check: dependencies in R code New result: WARNING Missing or unexported objects: ‘shapr::feature_matrix_cpp’ ‘shapr::observation_impute_cpp’ Package: PPtreeregViz Check: examples New result: ERROR Running examples in ‘PPtreeregViz-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: PPshapdependence > ### Title: Dependency plot > ### Aliases: PPshapdependence > > ### ** Examples > > data(dataXY) > testX <- dataXY[1,-1] > Model <- PPTreereg(Y~., data = dataXY, DEPTH = 2) > shap_long <- ppshapr_prep(Model, final.rule =5, method="simple") Error: 'feature_matrix_cpp' is not an exported object from 'namespace:shapr' Execution halted Package: PPtreeregViz Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘PPtreeregViz.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-4-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 16562 bytes Input file size = 17444 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15344 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15344 Output IDAT size = 15344 bytes (1218 bytes decrease) Output file size = 15422 bytes (2022 bytes = 11.59% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-5-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 47467 bytes Input file size = 47605 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39218 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39218 Output IDAT size = 39218 bytes (8249 bytes decrease) Output file size = 39296 bytes (8309 bytes = 17.45% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-6-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52857 bytes Input file size = 53007 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44611 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44611 Output IDAT size = 44611 bytes (8246 bytes decrease) Output file size = 44689 bytes (8318 bytes = 15.69% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-7-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52041 bytes Input file size = 52191 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43880 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43880 Output IDAT size = 43880 bytes (8161 bytes decrease) Output file size = 43958 bytes (8233 bytes = 15.77% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-8-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20953 bytes Input file size = 21055 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14909 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14909 Output IDAT size = 14909 bytes (6044 bytes decrease) Output file size = 14987 bytes (6068 bytes = 28.82% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-9-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11346 bytes Input file size = 11436 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8725 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8725 Output IDAT size = 8725 bytes (2621 bytes decrease) Output file size = 8803 bytes (2633 bytes = 23.02% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-10-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51223 bytes Input file size = 51373 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40196 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40196 Output IDAT size = 40196 bytes (11027 bytes decrease) Output file size = 40274 bytes (11099 bytes = 21.60% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-11-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 54985 bytes Input file size = 55135 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39743 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39743 Output IDAT size = 39743 bytes (15242 bytes decrease) Output file size = 39821 bytes (15314 bytes = 27.78% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-12-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 55451 bytes Input file size = 55601 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40315 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40315 Output IDAT size = 40315 bytes (15136 bytes decrease) Output file size = 40393 bytes (15208 bytes = 27.35% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-13-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 45002 bytes Input file size = 45140 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33628 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33628 Output IDAT size = 33628 bytes (11374 bytes decrease) Output file size = 33706 bytes (11434 bytes = 25.33% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-14-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 64994 bytes Input file size = 65156 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47920 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47920 Output IDAT size = 47920 bytes (17074 bytes decrease) Output file size = 47998 bytes (17158 bytes = 26.33% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-15-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30853 bytes Input file size = 30967 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23590 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23590 Output IDAT size = 23590 bytes (7263 bytes decrease) Output file size = 23668 bytes (7299 bytes = 23.57% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/PPtreeregViz.Rcheck/vign_test/PPtreeregViz/vignettes/PPtreeregViz_files/figure-html/unnamed-chunk-16-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 42264 bytes Input file size = 42402 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31810 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31810 Output IDAT size = 31810 bytes (10454 bytes decrease) Output file size = 31888 bytes (10514 bytes = 24.80% decrease) Quitting from lines 169-170 [unnamed-chunk-18] (PPtreeregViz.Rmd) Error: processing vignette 'PPtreeregViz.Rmd' failed with diagnostics: 'feature_matrix_cpp' is not an exported object from 'namespace:shapr' --- failed re-building ‘PPtreeregViz.Rmd’ SUMMARY: processing the following file failed: ‘PPtreeregViz.Rmd’ Error: Vignette re-building failed. Execution halted Package: SEMdeep Check: dependencies in R code New result: WARNING Missing or unexported object: ‘shapr::shapr’