downloading reverse dependencies ... downloading Anthropometry_1.20.tar.gz ... ok downloading biplotbootGUI_1.3.tar.gz ... ok downloading cncaGUI_1.1.tar.gz ... ok downloading CovTools_0.5.6.tar.gz ... ok downloading ETRep_1.2.1.tar.gz ... ok downloading LOST_2.1.2.tar.gz ... ok downloading maotai_0.2.7.tar.gz ... ok downloading multibiplotGUI_1.1.tar.gz ... ok downloading optiSolve_1.0.tar.gz ... ok downloading symbolicDA_0.7-2.tar.gz ... ok downloading elastes_0.1.7.tar.gz ... ok downloading Morpho_2.13.tar.gz ... ok installing dependencies ‘archetypes’, ‘biclust’, ‘cccp’, ‘dendroextras’, ‘elasdics’, ‘ICGE’, ‘orthogonalsplinebasis’, ‘rotations’, ‘RSDA’, ‘RSpincalc’, ‘shapes’, ‘SHT’, ‘sparseFLMM’ also installing the dependencies ‘additivityTests’, ‘flare’, ‘ggpolypath’ begin installing package ‘additivityTests’ begin installing package ‘flare’ begin installing package ‘ggpolypath’ begin installing package ‘archetypes’ begin installing package ‘ICGE’ begin installing package ‘dendroextras’ begin installing package ‘RSpincalc’ begin installing package ‘rotations’ begin installing package ‘cccp’ begin installing package ‘elasdics’ begin installing package ‘sparseFLMM’ begin installing package ‘orthogonalsplinebasis’ begin installing package ‘shapes’ * installing *source* package ‘dendroextras’ ... ** this is package ‘dendroextras’ version ‘0.2.3’ ** package ‘dendroextras’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dendroextras) * installing *source* package ‘additivityTests’ ... ** this is package ‘additivityTests’ version ‘1.1-4.2’ ** package ‘additivityTests’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (additivityTests) begin installing package ‘biclust’ * installing *source* package ‘ICGE’ ... ** this is package ‘ICGE’ version ‘0.4.3’ ** package ‘ICGE’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ICGE) * installing *source* package ‘orthogonalsplinebasis’ ... ** this is package ‘orthogonalsplinebasis’ version ‘0.1.7’ ** package ‘orthogonalsplinebasis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘integrate’ in package ‘orthogonalsplinebasis’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (orthogonalsplinebasis) * installing *source* package ‘elasdics’ ... ** this is package ‘elasdics’ version ‘1.1.3’ ** package ‘elasdics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (elasdics) * installing *source* package ‘archetypes’ ... ** this is package ‘archetypes’ version ‘2.2-0.2’ ** package ‘archetypes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (archetypes) * installing *source* package ‘RSpincalc’ ... ** this is package ‘RSpincalc’ version ‘1.0.2’ ** package ‘RSpincalc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RSpincalc) * installing *source* package ‘ggpolypath’ ... ** this is package ‘ggpolypath’ version ‘0.4.0’ ** package ‘ggpolypath’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggpolypath) begin installing package ‘RSDA’ * installing *source* package ‘flare’ ... ** this is package ‘flare’ version ‘1.7.0.2’ ** package ‘flare’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLSv7wz/R.INSTALLddc2d471f5b9f/flare/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SFGen.c -o SFGen.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c euc_proj.c -o euc_proj.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mymath.c -o mymath.o mymath.c: In function ‘max_fabs_vc’: mymath.c:141:11: warning: variable ‘cnt’ set but not used [-Wunused-but-set-variable] 141 | int i,cnt; | ^~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_dantzig_ladm_scr.c -o slim_dantzig_ladm_scr.o slim_dantzig_ladm_scr.c: In function ‘slim_dantzig_ladm_scr’: slim_dantzig_ladm_scr.c:262:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 262 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda; | ^~~~ slim_dantzig_ladm_scr.c:261:15: warning: variable ‘ndata’ set but not used [-Wunused-but-set-variable] 261 | int j,k,m,ndata,dim,nlambda,ite1,ite2,ite,max_ite0,max_ite1,max_ite2,num_scr,num_scr1,num_scr2,num_scr1_tmp,num_scr2_tmp,flag,flag1,flag2; | ^~~~~ slim_dantzig_ladm_scr.c: In function ‘slim_dantzig_ladm_scr2’: slim_dantzig_ladm_scr.c:411:21: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 411 | double T,T1,rho,zero,eps,eps1,ilambda; | ^~~~ slim_dantzig_ladm_scr.c:410:15: warning: variable ‘ndata’ set but not used [-Wunused-but-set-variable] 410 | int j,k,m,ndata,dim,nlambda,ite1,ite,max_ite0,max_ite1,num_scr,num_scr1,num_scr1_tmp,flag,flag1; | ^~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_lad_ladm_scr_btr.c -o slim_lad_ladm_scr_btr.o slim_lad_ladm_scr_btr.c: In function ‘slim_lad_ladm_scr_btr’: slim_lad_ladm_scr_btr.c:236:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 236 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,nrholamb; | ^~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_lasso_ladm_scr.c -o slim_lasso_ladm_scr.o slim_lasso_ladm_scr.c: In function ‘lasso_ladm_scr’: slim_lasso_ladm_scr.c:12:58: warning: variable ‘epsT’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT; | ^~~~ slim_lasso_ladm_scr.c:12:52: warning: variable ‘ratio’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT; | ^~~~~ slim_lasso_ladm_scr.c: In function ‘slim_lasso_ladm_scr’: slim_lasso_ladm_scr.c:183:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 183 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda; | ^~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_lq_ladm_scr_btr.c -o slim_lq_ladm_scr_btr.o slim_lq_ladm_scr_btr.c: In function ‘slim_lq_ladm_scr_btr’: slim_lq_ladm_scr_btr.c:242:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 242 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,nrholamb,qrtn; | ^~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_sqrt_ladm_scr.c -o slim_sqrt_ladm_scr.o slim_sqrt_ladm_scr.c: In function ‘sqrt_ladm_scr’: slim_sqrt_ladm_scr.c:12:92: warning: variable ‘epsT’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,alp_dif,beta_dif,mu_dif,threshold,tmpd,alp_tild_sq,alp_th,ratio,epsT; | ^~~~ slim_sqrt_ladm_scr.c:12:86: warning: variable ‘ratio’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,alp_dif,beta_dif,mu_dif,threshold,tmpd,alp_tild_sq,alp_th,ratio,epsT; | ^~~~~ slim_sqrt_ladm_scr.c: In function ‘slim_sqrt_ladm_scr’: slim_sqrt_ladm_scr.c:285:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 285 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,sqrtn,nrholamb; | ^~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slimh.c -o slimh.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sugm_clime_ladm_scr.c -o sugm_clime_ladm_scr.o sugm_clime_ladm_scr.c: In function ‘sugm_clime_ladm_scr’: sugm_clime_ladm_scr.c:11:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 11 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda; | ^~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sugm_tiger_ladm_scr.c -o sugm_tiger_ladm_scr.o sugm_tiger_ladm_scr.c: In function ‘tiger_lasso_ladm_scr’: sugm_tiger_ladm_scr.c:12:58: warning: variable ‘epsT’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT,tau0,tau1,tmp; | ^~~~ sugm_tiger_ladm_scr.c:12:52: warning: variable ‘ratio’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT,tau0,tau1,tmp; | ^~~~~ sugm_tiger_ladm_scr.c: In function ‘sugm_tiger_ladm_scr’: sugm_tiger_ladm_scr.c:205:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 205 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,sqrtn,nrholamb,tau0; | ^~~~ gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o flare.so SFGen.o euc_proj.o mymath.o registerDynamicSymbol.o slim_dantzig_ladm_scr.o slim_lad_ladm_scr_btr.o slim_lasso_ladm_scr.o slim_lq_ladm_scr_btr.o slim_sqrt_ladm_scr.o slimh.o sugm_clime_ladm_scr.o sugm_tiger_ladm_scr.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLSv7wz/R.INSTALLddc2d471f5b9f/flare/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-flare/00new/flare/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flare) begin installing package ‘SHT’ * installing *source* package ‘sparseFLMM’ ... ** this is package ‘sparseFLMM’ version ‘0.4.2’ ** package ‘sparseFLMM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparseFLMM) * installing *source* package ‘biclust’ ... ** this is package ‘biclust’ version ‘2.0.3.1’ ** package ‘biclust’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIEGKzA/R.INSTALLddd9e69ad80b2/biclust/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c biclust_init.c -o biclust_init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rbimax.c -o rbimax.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o biclust.so biclust_init.o rbimax.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIEGKzA/R.INSTALLddd9e69ad80b2/biclust/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-biclust/00new/biclust/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biclust) * installing *source* package ‘shapes’ ... ** this is package ‘shapes’ version ‘1.2.8’ ** using staged installation ** R ** data ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shapes) * installing *source* package ‘RSDA’ ... ** this is package ‘RSDA’ version ‘3.2.5’ ** package ‘RSDA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RSDA) * installing *source* package ‘rotations’ ... ** this is package ‘rotations’ version ‘1.6.6’ ** package ‘rotations’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpbKtDVj/R.INSTALLddc3d5440301/rotations/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CppBayesFunctions.cpp -o CppBayesFunctions.o CppBayesFunctions.cpp: In function ‘Rcpp::List both_MCMC_CPP(const arma::mat&, arma::mat, double, double, double, int, int, int)’: CppBayesFunctions.cpp:509:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 509 | for (unsigned int i = 0;i < burnin;++i) | ~~^~~~~~~~ CppBayesFunctions.cpp:520:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 520 | for (unsigned int i = 1;i < B;++i) | ~~^~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c FisherMethod.cpp -o FisherMethod.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ZhangMethod.cpp -o ZhangMethod.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c basics.cpp -o basics.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c estimators.cpp -o estimators.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c robustCpp.cpp -o robustCpp.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rotations.so CppBayesFunctions.o FisherMethod.o RcppExports.o ZhangMethod.o basics.o estimators.o robustCpp.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpbKtDVj/R.INSTALLddc3d5440301/rotations/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rotations/00new/rotations/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rotations) * installing *source* package ‘SHT’ ... ** this is package ‘SHT’ version ‘0.1.9’ ** package ‘SHT’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpF5Zdar/R.INSTALLddf861e9041d1/SHT/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_cov1_mxPBF.cpp -o cpp_cov1_mxPBF.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_cov2_2012LC.cpp -o cpp_cov2_2012LC.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_cov2_mxPBF.cpp -o cpp_cov2_mxPBF.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_energy.cpp -o cpp_energy.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_eqdist_2014BG.cpp -o cpp_eqdist_2014BG.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_extras.cpp -o cpp_extras.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_mean2_2014CLX.cpp -o cpp_mean2_2014CLX.o cpp_mean2_2014CLX.cpp: In function ‘arma::mat adjust_clime(arma::mat)’: cpp_mean2_2014CLX.cpp:21:10: warning: variable ‘theval’ set but not used [-Wunused-but-set-variable] 21 | double theval = 0.0; | ^~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_mean2_mxPBF.cpp -o cpp_mean2_mxPBF.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_norm_1d_moments.cpp -o cpp_norm_1d_moments.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_tester.cpp -o cpp_tester.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o SHT.so RcppExports.o cpp_cov1_mxPBF.o cpp_cov2_2012LC.o cpp_cov2_mxPBF.o cpp_energy.o cpp_eqdist_2014BG.o cpp_extras.o cpp_mean2_2014CLX.o cpp_mean2_mxPBF.o cpp_norm_1d_moments.o cpp_tester.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpF5Zdar/R.INSTALLddf861e9041d1/SHT/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-SHT/00new/SHT/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SHT) * installing *source* package ‘cccp’ ... ** this is package ‘cccp’ version ‘0.3-3’ ** package ‘cccp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpmv6yBq/R.INSTALLddc3774c3def9/cccp/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CONEC.cpp -o CONEC.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DCP.cpp -o DCP.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DLP.cpp -o DLP.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DNL.cpp -o DNL.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DQP.cpp -o DQP.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GPP.cpp -o GPP.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Modules.cpp -o Modules.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RPP.cpp -o RPP.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SOPS.cpp -o SOPS.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o cccp.so CONEC.o DCP.o DLP.o DNL.o DQP.o GPP.o Modules.o RPP.o RcppExports.o SOPS.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpmv6yBq/R.INSTALLddc3774c3def9/cccp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-cccp/00new/cccp/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cccp) checking shapes_1.2.8.tar.gz ... checking Anthropometry_1.20.tar.gz ... checking biplotbootGUI_1.3.tar.gz ... checking cncaGUI_1.1.tar.gz ... checking CovTools_0.5.6.tar.gz ... checking ETRep_1.2.1.tar.gz ... checking LOST_2.1.2.tar.gz ... checking maotai_0.2.7.tar.gz ... checking multibiplotGUI_1.1.tar.gz ... checking optiSolve_1.0.tar.gz ... checking symbolicDA_0.7-2.tar.gz ... checking elastes_0.1.7.tar.gz ... checking Morpho_2.13.tar.gz ... Depends: Package: shapes Depends: R (>= 3.5.0) Imports: minpack.lm, scatterplot3d, rgl, MASS, fitdistrplus Timings: user system elapsed shapes 91.341 7.616 99.051 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 2 10 Check results summary: shapes ... OK rdepends_Anthropometry ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_biplotbootGUI ... OK rdepends_cncaGUI ... OK rdepends_CovTools ... OK rdepends_elastes ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_ETRep ... OK rdepends_LOST ... OK rdepends_maotai ... OK rdepends_Morpho ... OK rdepends_multibiplotGUI ... OK rdepends_optiSolve ... OK rdepends_symbolicDA ... OK Check results changes: Package: biplotbootGUI Check: CRAN incoming feasibility Old result: NOTE Package: cncaGUI Check: CRAN incoming feasibility Old result: NOTE Package: elastes Check: CRAN incoming feasibility Old result: NOTE Package: multibiplotGUI Check: CRAN incoming feasibility Old result: NOTE Package: optiSolve Check: CRAN incoming feasibility Old result: NOTE