* using log directory ‘/srv/hornik/tmp/CRAN_pretest/sfclust.Rcheck’ * using R Under development (unstable) (2025-05-10 r88193) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (3) Debian flang-new version 19.1.7 (3) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘sfclust/DESCRIPTION’ ... OK * this is package ‘sfclust’ version ‘1.0.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/6s] NOTE Maintainer: ‘Erick A. Chacón-Montalván ’ New submission Suggests or Enhances not in mainstream repositories: INLA Availability using Additional_repositories specification: INLA yes https://inla.r-inla-download.org/R/stable * checking package namespace information ... OK * checking package dependencies ... INFO Package suggested but not available for checking: ‘INLA’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘sfclust’ can be installed ... [5s/5s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s/8s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [3s/3s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [2s/2s] OK Running ‘testthat.R’ [2s/2s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [20s/20s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘additional-features.Rmd’ using rmarkdown ** Processing: /srv/hornik/tmp/CRAN_pretest/sfclust.Rcheck/vign_test/sfclust/vignettes/additional-features_files/figure-html/unnamed-chunk-3-1.png 720x630 pixels, 3x8 bits/pixel, RGB Input IDAT size = 225433 bytes Input file size = 225835 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 184448 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 184448 Output IDAT size = 184448 bytes (40985 bytes decrease) Output file size = 184526 bytes (41309 bytes = 18.29% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/sfclust.Rcheck/vign_test/sfclust/vignettes/additional-features_files/figure-html/unnamed-chunk-4-1.png 720x630 pixels, 3x8 bits/pixel, RGB Input IDAT size = 331360 bytes Input file size = 331918 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 328545 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 328424 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 328424 Output IDAT size = 328424 bytes (2936 bytes decrease) Output file size = 328502 bytes (3416 bytes = 1.03% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/sfclust.Rcheck/vign_test/sfclust/vignettes/additional-features_files/figure-html/unnamed-chunk-6-1.png 720x630 pixels, 3x8 bits/pixel, RGB Input IDAT size = 88716 bytes Input file size = 88914 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 67629 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 67629 Output IDAT size = 67629 bytes (21087 bytes decrease) Output file size = 67707 bytes (21207 bytes = 23.85% decrease) Quitting from additional-features.Rmd:154-162 [unnamed-chunk-10] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `loadNamespace()`: ! there is no package called 'INLA' --- Backtrace: ▆ 1. ├─sfclust::log_mlik_all(...) 2. │ └─base::lapply(...) 3. │ └─sfclust (local) FUN(X[[i]], ...) 4. └─base::loadNamespace(x) 5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 6. └─base (local) withOneRestart(expr, restarts[[1L]]) 7. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'additional-features.Rmd' failed with diagnostics: there is no package called 'INLA' --- failed re-building ‘additional-features.Rmd’ --- re-building ‘get-started.Rmd’ using rmarkdown ** Processing: /srv/hornik/tmp/CRAN_pretest/sfclust.Rcheck/vign_test/sfclust/vignettes/get-started_files/figure-html/unnamed-chunk-3-1.png 720x855 pixels, 3x8 bits/pixel, RGB Input IDAT size = 606393 bytes Input file size = 607359 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 508758 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 508758 Output IDAT size = 508758 bytes (97635 bytes decrease) Output file size = 508836 bytes (98523 bytes = 16.22% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/sfclust.Rcheck/vign_test/sfclust/vignettes/get-started_files/figure-html/unnamed-chunk-5-1.png 720x630 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 151759 bytes Input file size = 152833 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 148363 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 146602 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 144971 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 142934 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 142934 Output IDAT size = 142934 bytes (8825 bytes decrease) Output file size = 143012 bytes (9821 bytes = 6.43% decrease) Quitting from get-started.Rmd:173-181 [unnamed-chunk-9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `loadNamespace()`: ! there is no package called 'INLA' --- Backtrace: ▆ 1. ├─sfclust::log_mlik_all(...) 2. │ └─base::lapply(...) 3. │ └─sfclust (local) FUN(X[[i]], ...) 4. └─base::loadNamespace(x) 5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 6. └─base (local) withOneRestart(expr, restarts[[1L]]) 7. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'get-started.Rmd' failed with diagnostics: there is no package called 'INLA' --- failed re-building ‘get-started.Rmd’ --- re-building ‘index.Rmd’ using rmarkdown --- finished re-building ‘index.Rmd’ --- re-building ‘stars-object.Rmd’ using rmarkdown ** Processing: /srv/hornik/tmp/CRAN_pretest/sfclust.Rcheck/vign_test/sfclust/vignettes/stars-object_files/figure-html/unnamed-chunk-5-1.png 1200x750 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36120 bytes Input file size = 36246 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34750 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 33429 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 33429 Output IDAT size = 33429 bytes (2691 bytes decrease) Output file size = 33507 bytes (2739 bytes = 7.56% decrease) --- finished re-building ‘stars-object.Rmd’ SUMMARY: processing the following files failed: ‘additional-features.Rmd’ ‘get-started.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE