Package check result: OK Changes to worse in reverse depends: Package: amt Check: examples New result: ERROR Running examples in ‘amt-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: hr_to_sf > ### Title: Convert home ranges to 'sfc' > ### Aliases: hr_to_sf hr_to_sf.tbl_df > > ### ** Examples > > > data("amt_fisher") > hr <- amt_fisher |> nest(data = -id) |> + mutate(hr = map(data, hr_mcp), n = map_int(data, nrow)) |> + hr_to_sf(hr, id, n) > > hr <- amt_fisher |> nest(data = -id) |> + mutate(hr = map(data, hr_kde), n = map_int(data, nrow)) |> + hr_to_sf(hr, id, n) Error in `dplyr::rename()`: ! Can't rename columns with `x`. ✖ `x` must be numeric or character, not a object. Backtrace: ▆ 1. ├─amt::hr_to_sf(...) 2. ├─amt:::hr_to_sf.tbl_df(...) 3. │ └─base::lapply(x1[[1]], hr_isopleths) 4. │ ├─amt (local) FUN(X[[i]], ...) 5. │ └─amt:::hr_isopleths.hr_prob(X[[i]], ...) 6. │ ├─amt::hr_isopleths(x$ud, level = x$levels, ...) 7. │ └─amt:::hr_isopleths.SpatRaster(x$ud, level = x$levels, ...) 8. │ ├─dplyr::mutate(...) 9. │ ├─dplyr::rename(sf::st_as_sf(con), geometry = x) 10. │ └─sf:::rename.sf(sf::st_as_sf(con), geometry = x) 11. │ └─tidyselect::eval_rename(quote(c(...)), .data) 12. │ └─tidyselect:::rename_impl(...) 13. │ └─tidyselect:::eval_select_impl(...) 14. │ ├─tidyselect:::with_subscript_errors(...) 15. │ │ └─base::withCallingHandlers(...) 16. │ └─tidyselect:::vars_select_eval(...) 17. │ └─tidyselect:::walk_data_tree(expr, data_mask, context_mask) 18. │ └─tidyselect:::eval_c(expr, data_mask, context_mask) 19. │ └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init) 20. │ └─tidyselect:::walk_data_tree(new, data_mask, context_mask) 21. │ └─tidyselect:::as_indices_sel_impl(...) 22. │ └─tidyselect:::as_indices_impl(...) 23. │ └─vctrs::vec_as_subscript(x, logical = "error", call = call, arg = arg) 24. └─rlang::cnd_signal(x) Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed extract_covariates 5.47 0.204 5.674 Package: amt Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘p1_getting_started.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p1_getting_started_files/figure-html/unnamed-chunk-20-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15067 bytes Input file size = 15157 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12957 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12957 Output IDAT size = 12957 bytes (2110 bytes decrease) Output file size = 13035 bytes (2122 bytes = 14.00% decrease) --- finished re-building ‘p1_getting_started.Rmd’ --- re-building ‘p2_hr.Rmd’ using rmarkdown Quitting from lines 80-82 [unnamed-chunk-6] (p2_hr.Rmd) Error: processing vignette 'p2_hr.Rmd' failed with diagnostics: Can't rename columns with `x`. ✖ `x` must be numeric or character, not a object. --- failed re-building ‘p2_hr.Rmd’ --- re-building ‘p3_rsf.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p3_rsf_files/figure-html/unnamed-chunk-4-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 44437 bytes Input file size = 44575 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37944 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37944 Output IDAT size = 37944 bytes (6493 bytes decrease) Output file size = 38022 bytes (6553 bytes = 14.70% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p3_rsf_files/figure-html/unnamed-chunk-5-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23982 bytes Input file size = 24084 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18643 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18643 Output IDAT size = 18643 bytes (5339 bytes decrease) Output file size = 18721 bytes (5363 bytes = 22.27% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p3_rsf_files/figure-html/unnamed-chunk-6-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33632 bytes Input file size = 33758 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25157 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25157 Output IDAT size = 25157 bytes (8475 bytes decrease) Output file size = 25235 bytes (8523 bytes = 25.25% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p3_rsf_files/figure-html/unnamed-chunk-7-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35769 bytes Input file size = 35895 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27068 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27068 Output IDAT size = 27068 bytes (8701 bytes decrease) Output file size = 27146 bytes (8749 bytes = 24.37% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p3_rsf_files/figure-html/unnamed-chunk-8-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 41455 bytes Input file size = 41593 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29870 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29870 Output IDAT size = 29870 bytes (11585 bytes decrease) Output file size = 29948 bytes (11645 bytes = 28.00% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p3_rsf_files/figure-html/unnamed-chunk-9-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 42418 bytes Input file size = 42556 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31116 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31116 Output IDAT size = 31116 bytes (11302 bytes decrease) Output file size = 31194 bytes (11362 bytes = 26.70% decrease) --- finished re-building ‘p3_rsf.Rmd’ --- re-building ‘p4_SSF.Rmd’ using rmarkdown --- finished re-building ‘p4_SSF.Rmd’ --- re-building ‘p5_other_packages.Rmd’ using rmarkdown --- finished re-building ‘p5_other_packages.Rmd’ --- re-building ‘p6_uhc_plots.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/habitat-1.png 672x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 69038 bytes Input file size = 69212 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50197 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50197 Output IDAT size = 50197 bytes (18841 bytes decrease) Output file size = 50275 bytes (18937 bytes = 27.36% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/habitat-2.png 672x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 47622 bytes Input file size = 47760 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33480 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33480 Output IDAT size = 33480 bytes (14142 bytes decrease) Output file size = 33558 bytes (14202 bytes = 29.74% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot wrong-1.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35807 bytes Input file size = 35933 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28054 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28054 Output IDAT size = 28054 bytes (7753 bytes decrease) Output file size = 28132 bytes (7801 bytes = 21.71% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot wrong-2.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 41482 bytes Input file size = 41620 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31493 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31493 Output IDAT size = 31493 bytes (9989 bytes decrease) Output file size = 31571 bytes (10049 bytes = 24.14% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot wrong-3.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20552 bytes Input file size = 20654 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18024 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18024 Output IDAT size = 18024 bytes (2528 bytes decrease) Output file size = 18102 bytes (2552 bytes = 12.36% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot wrong-4.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14304 bytes Input file size = 14394 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11482 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11482 Output IDAT size = 11482 bytes (2822 bytes decrease) Output file size = 11560 bytes (2834 bytes = 19.69% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot wrong-5.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51774 bytes Input file size = 51924 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40324 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40324 Output IDAT size = 40324 bytes (11450 bytes decrease) Output file size = 40402 bytes (11522 bytes = 22.19% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot wrong-6.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49964 bytes Input file size = 50114 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37005 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37005 Output IDAT size = 37005 bytes (12959 bytes decrease) Output file size = 37083 bytes (13031 bytes = 26.00% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot wrong-7.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36801 bytes Input file size = 36927 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29390 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29390 Output IDAT size = 29390 bytes (7411 bytes decrease) Output file size = 29468 bytes (7459 bytes = 20.20% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot right-1.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36675 bytes Input file size = 36801 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28440 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28440 Output IDAT size = 28440 bytes (8235 bytes decrease) Output file size = 28518 bytes (8283 bytes = 22.51% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot right-2.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 40538 bytes Input file size = 40664 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30994 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30994 Output IDAT size = 30994 bytes (9544 bytes decrease) Output file size = 31072 bytes (9592 bytes = 23.59% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot right-3.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20422 bytes Input file size = 20524 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17852 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17852 Output IDAT size = 17852 bytes (2570 bytes decrease) Output file size = 17930 bytes (2594 bytes = 12.64% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot right-4.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15045 bytes Input file size = 15135 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12017 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12017 Output IDAT size = 12017 bytes (3028 bytes decrease) Output file size = 12095 bytes (3040 bytes = 20.09% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot right-5.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 50695 bytes Input file size = 50845 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39525 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39525 Output IDAT size = 39525 bytes (11170 bytes decrease) Output file size = 39603 bytes (11242 bytes = 22.11% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot right-6.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49142 bytes Input file size = 49280 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36201 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36201 Output IDAT size = 36201 bytes (12941 bytes decrease) Output file size = 36279 bytes (13001 bytes = 26.38% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot right-7.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38942 bytes Input file size = 39068 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31608 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31608 Output IDAT size = 31608 bytes (7334 bytes decrease) Output file size = 31686 bytes (7382 bytes = 18.90% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot sub-1.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36675 bytes Input file size = 36801 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28440 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28440 Output IDAT size = 28440 bytes (8235 bytes decrease) Output file size = 28518 bytes (8283 bytes = 22.51% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot sub-2.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20422 bytes Input file size = 20524 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17852 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17852 Output IDAT size = 17852 bytes (2570 bytes decrease) Output file size = 17930 bytes (2594 bytes = 12.64% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot sub-3.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15045 bytes Input file size = 15135 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12017 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12017 Output IDAT size = 12017 bytes (3028 bytes decrease) Output file size = 12095 bytes (3040 bytes = 20.09% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot env-1.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15295 bytes Input file size = 15385 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12210 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12210 Output IDAT size = 12210 bytes (3085 bytes decrease) Output file size = 12288 bytes (3097 bytes = 20.13% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot env-2.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 41121 bytes Input file size = 41259 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32105 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32105 Output IDAT size = 32105 bytes (9016 bytes decrease) Output file size = 32183 bytes (9076 bytes = 22.00% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot env-3.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 45981 bytes Input file size = 46119 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37818 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37818 Output IDAT size = 37818 bytes (8163 bytes decrease) Output file size = 37896 bytes (8223 bytes = 17.83% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot env-4.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33909 bytes Input file size = 34035 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27908 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27908 Output IDAT size = 27908 bytes (6001 bytes decrease) Output file size = 27986 bytes (6049 bytes = 17.77% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot env-5.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21183 bytes Input file size = 21285 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19841 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 19461 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 19461 Output IDAT size = 19461 bytes (1722 bytes decrease) Output file size = 19539 bytes (1746 bytes = 8.20% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot env-6.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39586 bytes Input file size = 39712 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33578 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33578 Output IDAT size = 33578 bytes (6008 bytes decrease) Output file size = 33656 bytes (6056 bytes = 15.25% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/hsf plot env-7.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36280 bytes Input file size = 36406 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28504 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28504 Output IDAT size = 28504 bytes (7776 bytes decrease) Output file size = 28582 bytes (7824 bytes = 21.49% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/issf plot wrong-1.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49344 bytes Input file size = 49494 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36271 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36271 Output IDAT size = 36271 bytes (13073 bytes decrease) Output file size = 36349 bytes (13145 bytes = 26.56% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/issf plot wrong-2.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 42517 bytes Input file size = 42655 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32858 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32858 Output IDAT size = 32858 bytes (9659 bytes decrease) Output file size = 32936 bytes (9719 bytes = 22.79% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/issf plot wrong-3.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21205 bytes Input file size = 21307 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19350 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19350 Output IDAT size = 19350 bytes (1855 bytes decrease) Output file size = 19428 bytes (1879 bytes = 8.82% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/issf plot wrong-4.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14360 bytes Input file size = 14450 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11544 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11544 Output IDAT size = 11544 bytes (2816 bytes decrease) Output file size = 11622 bytes (2828 bytes = 19.57% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/issf plot wrong-5.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 53924 bytes Input file size = 54074 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39898 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39898 Output IDAT size = 39898 bytes (14026 bytes decrease) Output file size = 39976 bytes (14098 bytes = 26.07% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/issf plot wrong-6.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 45567 bytes Input file size = 45705 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34261 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34261 Output IDAT size = 34261 bytes (11306 bytes decrease) Output file size = 34339 bytes (11366 bytes = 24.87% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/issf plot wrong-7.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38781 bytes Input file size = 38907 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31117 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31117 Output IDAT size = 31117 bytes (7664 bytes decrease) Output file size = 31195 bytes (7712 bytes = 19.82% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/issf plot right-1.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 43454 bytes Input file size = 43592 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32691 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32691 Output IDAT size = 32691 bytes (10763 bytes decrease) Output file size = 32769 bytes (10823 bytes = 24.83% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/issf plot right-2.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 41088 bytes Input file size = 41226 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31797 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31797 Output IDAT size = 31797 bytes (9291 bytes decrease) Output file size = 31875 bytes (9351 bytes = 22.68% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/issf plot right-3.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18585 bytes Input file size = 18687 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17854 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 16995 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 16995 Output IDAT size = 16995 bytes (1590 bytes decrease) Output file size = 17073 bytes (1614 bytes = 8.64% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/issf plot right-4.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14289 bytes Input file size = 14379 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11434 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11434 Output IDAT size = 11434 bytes (2855 bytes decrease) Output file size = 11512 bytes (2867 bytes = 19.94% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/issf plot right-5.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 53777 bytes Input file size = 53927 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41379 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41379 Output IDAT size = 41379 bytes (12398 bytes decrease) Output file size = 41457 bytes (12470 bytes = 23.12% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/issf plot right-6.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39594 bytes Input file size = 39720 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30408 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30408 Output IDAT size = 30408 bytes (9186 bytes decrease) Output file size = 30486 bytes (9234 bytes = 23.25% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/amt.Rcheck/vign_test/amt/vignettes/p6_uhc_plots_files/figure-html/issf plot right-7.png 672x432 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35602 bytes Input file size = 35728 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28506 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28506 Output IDAT size = 28506 bytes (7096 bytes decrease) Output file size = 28584 bytes (7144 bytes = 20.00% decrease) --- finished re-building ‘p6_uhc_plots.Rmd’ SUMMARY: processing the following file failed: ‘p2_hr.Rmd’ Error: Vignette re-building failed. Execution halted Package: amt Check: tests New result: ERROR Running ‘tinytest.R’ [14s/14s] Running the tests in ‘tests/tinytest.R’ failed. Complete output: > > if ( requireNamespace("tinytest", quietly=TRUE) ){ + tinytest::test_package("amt") + } Attaching package: 'amt' The following object is masked from 'package:stats': filter test_as_sf_star.R............. 0 tests test_as_sf_star.R............. 0 tests test_as_sf_star.R............. 0 tests test_as_sf_star.R............. 0 tests test_as_sf_star.R............. 0 tests test_as_sf_star.R............. 0 tests test_as_sf_star.R............. 0 tests test_as_sf_star.R............. 0 tests test_as_sf_star.R............. 0 tests test_as_sf_star.R............. 1 tests OK test_as_sf_star.R............. 2 tests OK test_as_sf_star.R............. 3 tests OK test_as_sf_star.R............. 4 tests OK test_as_sf_star.R............. 5 tests OK test_as_sf_star.R............. 6 tests OK test_as_sf_star.R............. 7 tests OK test_as_sf_star.R............. 8 tests OK test_as_sf_star.R............. 9 tests OK test_as_sf_star.R............. 10 tests OK test_as_sf_star.R............. 11 tests OK test_as_sf_star.R............. 12 tests OK 0.1s test_as_telemetry.R........... 0 tests Attaching package: 'lubridate' The following objects are masked from 'package:base': date, intersect, setdiff, union test_as_telemetry.R........... 0 tests test_as_telemetry.R........... 0 tests test_as_telemetry.R........... 0 tests test_as_telemetry.R........... 1 tests OK test_as_telemetry.R........... 2 tests OK test_as_telemetry.R........... 3 tests OK test_as_telemetry.R........... 4 tests OK test_as_telemetry.R........... 5 tests OK 8.0s test_as_track.R............... 0 tests test_as_track.R............... 0 tests test_as_track.R............... 0 tests test_as_track.R............... 1 tests OK test_as_track.R............... 2 tests OK test_as_track.R............... 3 tests OK test_as_track.R............... 4 tests OK test_as_track.R............... 4 tests OK test_as_track.R............... 4 tests OK test_as_track.R............... 5 tests OK test_as_track.R............... 6 tests OK test_as_track.R............... 7 tests OK test_as_track.R............... 8 tests OK test_as_track.R............... 9 tests OK test_as_track.R............... 9 tests OK test_as_track.R............... 10 tests OK test_as_track.R............... 11 tests OK 0.7s test_crs.R.................... 0 tests test_crs.R.................... 0 tests test_crs.R.................... 0 tests test_crs.R.................... 0 tests test_crs.R.................... 0 tests test_crs.R.................... 0 tests test_crs.R.................... 0 tests test_crs.R.................... 0 tests test_crs.R.................... 0 tests test_crs.R.................... 0 tests test_crs.R.................... 0 tests test_crs.R.................... 0 tests test_crs.R.................... 0 tests test_crs.R.................... 0 tests test_crs.R.................... 0 tests test_crs.R.................... 1 tests OK test_crs.R.................... 2 tests OK test_crs.R.................... 3 tests OK Error in `dplyr::rename()`: ! Can't rename columns with `x`. ✖ `x` must be numeric or character, not a object. Backtrace: ▆ 1. ├─tinytest::test_package("amt") 2. │ └─tinytest::run_test_dir(...) 3. │ └─base::lapply(...) 4. │ └─tinytest (local) FUN(X[[i]], ...) 5. │ └─base::eval(expr, envir = e) 6. │ └─base::eval(expr, envir = e) 7. │ ├─tinytest::expect_true(is.na(get_crs(h1.2))) 8. │ │ └─tinytest (local) fun(...) 9. │ │ └─tinytest:::isTRUE(current) 10. │ ├─amt::get_crs(h1.2) 11. │ └─amt:::get_crs.hr(h1.2) 12. │ ├─sf::st_crs(hr_isopleths(x)) 13. │ ├─amt::hr_isopleths(x) 14. │ └─amt:::hr_isopleths.hr_prob(x) 15. │ ├─amt::hr_isopleths(x$ud, level = x$levels, ...) 16. │ └─amt:::hr_isopleths.SpatRaster(x$ud, level = x$levels, ...) 17. │ ├─dplyr::mutate(...) 18. │ ├─dplyr::rename(sf::st_as_sf(con), geometry = x) 19. │ └─sf:::rename.sf(sf::st_as_sf(con), geometry = x) 20. │ └─tidyselect::eval_rename(quote(c(...)), .data) 21. │ └─tidyselect:::rename_impl(...) 22. │ └─tidyselect:::eval_select_impl(...) 23. │ ├─tidyselect:::with_subscript_errors(...) 24. │ │ └─base::withCallingHandlers(...) 25. │ └─tidyselect:::vars_select_eval(...) 26. │ └─tidyselect:::walk_data_tree(expr, data_mask, context_mask) 27. │ └─tidyselect:::eval_c(expr, data_mask, context_mask) 28. │ └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init) 29. │ └─tidyselect:::walk_data_tree(new, data_mask, context_mask) 30. │ └─tidyselect:::as_indices_sel_impl(...) 31. │ └─tidyselect:::as_indices_impl(...) 32. │ └─vctrs::vec_as_subscript(x, logical = "error", call = call, arg = arg) 33. └─rlang::cnd_signal(x) Warning message: In steps.track_xyt(t2) : burst's are ignored, use steps_by_burst instead. Execution halted Package: eSDM Check: tests New result: ERROR Running ‘testthat.R’ [3s/3s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(eSDM) > > test_check("eSDM") [ FAIL 2 | WARN 4 | SKIP 0 | PASS 40 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-overlay_sdm.R:25:3'): simple overlay ───────────────────────── overlay_sdm(sfc2, sf1, 1, 100) not equal to `sf2`. Attributes: < Component "class": Lengths (4, 2) differ (string compare on first 2) > Attributes: < Component "class": 1 string mismatch > ── Failure ('test-overlay_sdm.R:26:3'): simple overlay ───────────────────────── overlay_sdm(sfc2, sf1b, 1, 100) not equal to `sf2b`. Attributes: < Component "class": Lengths (4, 2) differ (string compare on first 2) > Attributes: < Component "class": 1 string mismatch > [ FAIL 2 | WARN 4 | SKIP 0 | PASS 40 ] Error: Test failures Execution halted Package: GDAtools Check: examples New result: ERROR Running examples in ‘GDAtools-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: ggsmoothed_supvar > ### Title: Plots the density a supplementary variable > ### Aliases: ggsmoothed_supvar > ### Keywords: aplot multivariate > > ### ** Examples > > # specific MCA of Taste example data set > data(Taste) > junk <- c("FrenchPop.NA", "Rap.NA", "Rock.NA", "Jazz.NA", "Classical.NA", + "Comedy.NA", "Crime.NA", "Animation.NA", "SciFi.NA", "Love.NA", + "Musical.NA") > mca <- speMCA(Taste[,1:11], excl = junk) > # density plot for Educ = "High" > ggsmoothed_supvar(mca, Taste$Educ, "High") Error in `ggplot2::geom_sf()`: ! Problem while computing aesthetics. ℹ Error occurred in the 1st layer. Caused by error in `.data$x`: ! Column `x` not found in `.data`. Backtrace: ▆ 1. ├─base (local) ``(x) 2. ├─ggplot2:::print.ggplot(x) 3. │ ├─ggplot2::ggplot_build(x) 4. │ └─ggplot2:::ggplot_build.ggplot(x) 5. │ └─ggplot2:::by_layer(...) 6. │ ├─rlang::try_fetch(...) 7. │ │ ├─base::tryCatch(...) 8. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 9. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 10. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 11. │ │ └─base::withCallingHandlers(...) 12. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]]) 13. │ └─l$compute_aesthetics(d, plot) 14. │ └─ggplot2 (local) compute_aesthetics(..., self = self) 15. │ └─base::lapply(aesthetics, eval_tidy, data = data, env = env) 16. │ └─rlang (local) FUN(X[[i]], ...) 17. ├─x 18. ├─rlang:::`$.rlang_data_pronoun`(.data, x) 19. │ └─rlang:::data_pronoun_get(...) 20. └─rlang:::abort_data_pronoun(x, call = y) 21. └─rlang::abort(msg, "rlang_error_data_pronoun_not_found", call = call) Execution halted Package: googletraffic Check: examples New result: ERROR Running examples in ‘googletraffic-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: gt_make_grid > ### Title: Creates Grid to Query Google Traffic > ### Aliases: gt_make_grid > > ### ** Examples > > ## Make polygon > poly_sf <- c(xmin = -74.02426, + xmax = -73.91048, + ymin = 40.70042, + ymax = 40.87858) |> + sf::st_bbox() |> + sf::st_as_sfc() |> + sf::st_as_sf() > > sf::st_crs(poly_sf) <- 4326 > > ## Make grid using polygon > grid_sf <- gt_make_grid(polygon = poly_sf, + height = 2000, + width = 2000, + zoom = 16) Warning in gt_make_grid(polygon = poly_sf, height = 2000, width = 2000, : "height_width_max" ignored; if "height", "width", and "height_width_max" are all specified, "height_width_max" will be ignored. Warning: st_centroid assumes attributes are constant over geometries Warning in CPL_crs_from_input(x) : GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. Error in sf::st_sf(points_df, geometry = geom$x) : no simple features geometry column present Calls: gt_make_grid -> Execution halted Package: ofpetrial Check: examples New result: ERROR Running examples in ‘ofpetrial-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: make_exp_plots > ### Title: Make experimental plots/strips inside the field boundary > ### Aliases: make_exp_plots > > ### ** Examples > > n_plot_info <- + prep_plot( + input_name = "NH3", + unit_system = "imperial", + machine_width = 30, + section_num = 1, + harvester_width = 20, + headland_length = 30, + side_length = 60 + ) > > exp_data <- + make_exp_plots( + input_plot_info = n_plot_info, + boundary_data = system.file("extdata", "boundary-simple1.shp", package = "ofpetrial"), + abline_data = system.file("extdata", "ab-line-simple1.shp", package = "ofpetrial"), + abline_type = "free" + ) Error in `dplyr::mutate()`: ℹ In argument: `exp_plots = list(...)`. ℹ In row 1. Caused by error in `stopifnot()`: ℹ In argument: `through_line = list(get_through_line(geometry, radius, ab_xy_nml))`. ℹ In row 1. Caused by error: ! object 'geometry' not found Backtrace: ▆ 1. ├─ofpetrial::make_exp_plots(...) 2. │ └─... %>% ... 3. ├─dplyr::mutate(...) 4. ├─dplyr::mutate(...) 5. ├─dplyr::mutate(...) 6. ├─dplyr::mutate(...) 7. ├─dplyr::mutate(...) 8. ├─dplyr:::mutate.data.frame(...) 9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by) 10. │ ├─base::withCallingHandlers(...) 11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns) 12. │ └─mask$eval_all_mutate(quo) 13. │ └─dplyr (local) eval() 14. ├─ofpetrial:::make_trial_plots_by_input(...) 15. │ └─... %>% purrr::reduce(rbind) 16. ├─purrr::reduce(., rbind) 17. │ └─purrr:::reduce_impl(.x, .f, ..., .init = .init, .dir = .dir) 18. │ └─purrr:::reduce_init(.x, .init, left = left, error_call = .purrr_error_call) 19. │ └─rlang::is_empty(x) 20. ├─purrr::pluck(., "int_line") 21. │ └─purrr:::pluck_raw(.x, list2(...), .default = .default) 22. ├─dplyr::filter(., nrow(int_line) != 0) 23. ├─dplyr::mutate(...) 24. ├─dplyr::mutate(...) 25. ├─sf:::mutate.sf(...) 26. │ └─sf:::.re_sf(NextMethod(), sf_column_name = sf_column_name, agr) 27. │ └─base::stopifnot(...) 28. ├─base::NextMethod() 29. ├─dplyr:::mutate.data.frame(., through_line = list(get_through_line(geometry, radius, ab_xy_nml))) 30. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by) 31. │ ├─base::withCallingHandlers(...) 32. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns) 33. │ └─mask$eval_all_mutate(quo) 34. │ └─dplyr (local) eval() 35. ├─ofpetrial:::get_through_line(geometry, radius, ab_xy_nml) 36. │ ├─base::suppressWarnings(sf::st_coordinates(st_centroid_quietly(geometry))) 37. │ │ └─base::withCallingHandlers(...) 38. │ ├─sf::st_coordinates(st_centroid_quietly(geometry)) 39. │ └─ofpetrial:::st_centroid_quietly(geometry) 40. │ ├─base::suppressWarnings(sf::st_centroid(...)) 41. │ │ └─base::withCallingHandlers(...) 42. │ └─sf::st_centroid(...) 43. └─base::.handleSimpleError(...) 44. └─dplyr (local) h(simpleError(msg, call)) 45. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed check_ortho_inputs 10.140 0.344 10.485 check_ortho_with_chars 10.106 0.152 10.388 Package: ofpetrial Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘basic-work-flow.Rmd’ using rmarkdown Quitting from lines 62-71 [unnamed-chunk-3] (basic-work-flow.Rmd) Error: processing vignette 'basic-work-flow.Rmd' failed with diagnostics: ℹ In argument: `exp_plots = list(...)`. ℹ In row 1. Caused by error in `stopifnot()`: ℹ In argument: `through_line = list(get_through_line(geometry, radius, ab_xy_nml))`. ℹ In row 1. Caused by error: ! object 'geometry' not found --- failed re-building ‘basic-work-flow.Rmd’ SUMMARY: processing the following file failed: ‘basic-work-flow.Rmd’ Error: Vignette re-building failed. Execution halted Package: rangeMapper Check: examples New result: ERROR Running examples in ‘rangeMapper-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: rmap_prepare > ### Title: Define a canvas and process ranges > ### Aliases: rmap_prepare > ### rmap_prepare,rmapConnection,character,numeric,missing-method > ### rmap_prepare,rmapConnection,character,numeric,numeric-method > > ### ** Examples > > > # IN-MEMORY PROJECT > require(rangeMapper) > wrens = read_wrens() > con = rmap_connect() > rmap_add_ranges(con, wrens, 'sci_name') > rmap_prepare(con, 'hex', cellsize=500) --> Making hex canvas ...done. (i) The canvas has 576 cells. Error in setnames(x, "x", "geometry") : Items of 'old' not found in column names: [x]. Consider skip_absent=TRUE. Calls: rmap_prepare ... rmap_prepare -> setnames -> stopf -> raise_condition -> signal Execution halted Package: rangeMapper Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Case_studies_Valcu_et_al_2012.Rmd’ using rmarkdown Quitting from lines 40-56 [unnamed-chunk-1] (Case_studies_Valcu_et_al_2012.Rmd) Error: processing vignette 'Case_studies_Valcu_et_al_2012.Rmd' failed with diagnostics: Items of 'old' not found in column names: [x]. Consider skip_absent=TRUE. --- failed re-building ‘Case_studies_Valcu_et_al_2012.Rmd’ --- re-building ‘rangeMapper.Rmd’ using rmarkdown Quitting from lines 50-53 [unnamed-chunk-3] (rangeMapper.Rmd) Error: processing vignette 'rangeMapper.Rmd' failed with diagnostics: Items of 'old' not found in column names: [x]. Consider skip_absent=TRUE. --- failed re-building ‘rangeMapper.Rmd’ SUMMARY: processing the following files failed: ‘Case_studies_Valcu_et_al_2012.Rmd’ ‘rangeMapper.Rmd’ Error: Vignette re-building failed. Execution halted Package: rangeMapper Check: tests New result: ERROR Running ‘testthat.R’ [14s/14s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(rangeMapper) rangeMapper 2.0.3 > > test_check("rangeMapper") [ FAIL 9 | WARN 0 | SKIP 0 | PASS 24 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-1_utilities.R:79:9'): rmap_to_sf returns sf ─────────────────── Error in `setnames(x, "x", "geometry")`: Items of 'old' not found in column names: [x]. Consider skip_absent=TRUE. Backtrace: ▆ 1. ├─rangeMapper::rmap_prepare(con, "hex", 500) at test-1_utilities.R:79:9 2. └─rangeMapper::rmap_prepare(con, "hex", 500) 3. └─data.table::setnames(x, "x", "geometry") 4. └─data.table:::stopf(...) 5. └─data.table:::raise_condition(...) ── Error ('test-2_prepare.R:21:9'): rmap_refresh works ───────────────────────── Error in `setnames(x, "x", "geometry")`: Items of 'old' not found in column names: [x]. Consider skip_absent=TRUE. Backtrace: ▆ 1. ├─rangeMapper::rmap_prepare(con, "hex", 5000) at test-2_prepare.R:21:9 2. └─rangeMapper::rmap_prepare(con, "hex", 5000) 3. └─data.table::setnames(x, "x", "geometry") 4. └─data.table:::stopf(...) 5. └─data.table:::raise_condition(...) ── Error ('test-2_prepare.R:45:9'): default rmap_prepare work ────────────────── Error in `setnames(x, "x", "geometry")`: Items of 'old' not found in column names: [x]. Consider skip_absent=TRUE. Backtrace: ▆ 1. ├─testthat::expect_true(rmap_prepare(con, "hex", 5000)) at test-2_prepare.R:45:9 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─rangeMapper::rmap_prepare(con, "hex", 5000) 5. └─rangeMapper::rmap_prepare(con, "hex", 5000) 6. └─data.table::setnames(x, "x", "geometry") 7. └─data.table:::stopf(...) 8. └─data.table:::raise_condition(...) ── Error ('test-2_prepare.R:62:9'): rmap_prepare restart graciously ──────────── Error in `setnames(x, "x", "geometry")`: Items of 'old' not found in column names: [x]. Consider skip_absent=TRUE. Backtrace: ▆ 1. ├─rangeMapper::rmap_prepare(con, "hex", 5000) at test-2_prepare.R:62:9 2. └─rangeMapper::rmap_prepare(con, "hex", 5000) 3. └─data.table::setnames(x, "x", "geometry") 4. └─data.table:::stopf(...) 5. └─data.table:::raise_condition(...) ── Error ('test-2_prepare.R:73:9'): options rmap.verbose = TRUE stops messages ── Error in `setnames(x, "x", "geometry")`: Items of 'old' not found in column names: [x]. Consider skip_absent=TRUE. Backtrace: ▆ 1. ├─testthat::expect_silent(rmap_prepare(con, "hex", 5000)) at test-2_prepare.R:73:9 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. ├─rangeMapper::rmap_prepare(con, "hex", 5000) 10. └─rangeMapper::rmap_prepare(con, "hex", 5000) 11. └─data.table::setnames(x, "x", "geometry") 12. └─data.table:::stopf(...) 13. └─data.table:::raise_condition(...) ── Error ('test-2_prepare.R:95:9'): parallel rmap_prepare work ───────────────── Error in `setnames(x, "x", "geometry")`: Items of 'old' not found in column names: [x]. Consider skip_absent=TRUE. Backtrace: ▆ 1. ├─rangeMapper::rmap_prepare(con, "hex", 5000, chunksize = 1/2) at test-2_prepare.R:95:9 2. └─rangeMapper::rmap_prepare(con, "hex", 5000, chunksize = 1/2) 3. └─data.table::setnames(x, "x", "geometry") 4. └─data.table:::stopf(...) 5. └─data.table:::raise_condition(...) ── Error ('test-3_subsets.R:8:1'): (code run outside of `test_that()`) ───────── Error in `setnames(x, "x", "geometry")`: Items of 'old' not found in column names: [x]. Consider skip_absent=TRUE. Backtrace: ▆ 1. ├─rangeMapper::rmap_prepare(con, "hex", cellsize = 500) at test-3_subsets.R:8:1 2. └─rangeMapper::rmap_prepare(con, "hex", cellsize = 500) 3. └─data.table::setnames(x, "x", "geometry") 4. └─data.table:::stopf(...) 5. └─data.table:::raise_condition(...) ── Error ('test-4_maps.R:5:1'): (code run outside of `test_that()`) ──────────── Error in `setnames(x, "x", "geometry")`: Items of 'old' not found in column names: [x]. Consider skip_absent=TRUE. Backtrace: ▆ 1. ├─rangeMapper::rmap_prepare(con, "hex", cellsize = 5000) at test-4_maps.R:5:1 2. └─rangeMapper::rmap_prepare(con, "hex", cellsize = 5000) 3. └─data.table::setnames(x, "x", "geometry") 4. └─data.table:::stopf(...) 5. └─data.table:::raise_condition(...) ── Error ('test-5_get.R:4:1'): (code run outside of `test_that()`) ───────────── Error in `setnames(x, "x", "geometry")`: Items of 'old' not found in column names: [x]. Consider skip_absent=TRUE. Backtrace: ▆ 1. ├─rangeMapper::rmap_prepare(con, "hex", cellsize = 1000) at test-5_get.R:4:1 2. └─rangeMapper::rmap_prepare(con, "hex", cellsize = 1000) 3. └─data.table::setnames(x, "x", "geometry") 4. └─data.table:::stopf(...) 5. └─data.table:::raise_condition(...) [ FAIL 9 | WARN 0 | SKIP 0 | PASS 24 ] Error: Test failures In addition: Warning message: call dbDisconnect() when finished working with a connection Execution halted Package: roads Check: tests New result: ERROR Running ‘testthat.R’ [64s/62s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(roads) > > test_check("roads") |---------|---------|---------|---------| ========================================= |---------|---------|---------|---------| ========================================= [ FAIL 2 | WARN 0 | SKIP 0 | PASS 49 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-projectRoads.R:154:3'): landings on road or multiple landings in same cell work ── Error in `rename(., geometry = x)`: Can't rename columns that don't exist. ✖ Column `x` doesn't exist. Backtrace: ▆ 1. ├─dplyr::bind_rows(...) at test-projectRoads.R:154:3 2. │ └─rlang::list2(...) 3. ├─... %>% rename(geometry = x) 4. ├─dplyr::rename(., geometry = x) 5. ├─sf:::rename.sf(., geometry = x) 6. │ └─tidyselect::eval_rename(quote(c(...)), .data) 7. │ └─tidyselect:::rename_impl(...) 8. │ └─tidyselect:::eval_select_impl(...) 9. │ ├─tidyselect:::with_subscript_errors(...) 10. │ │ └─base::withCallingHandlers(...) 11. │ └─tidyselect:::vars_select_eval(...) 12. │ └─tidyselect:::walk_data_tree(expr, data_mask, context_mask) 13. │ └─tidyselect:::eval_c(expr, data_mask, context_mask) 14. │ └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init) 15. │ └─tidyselect:::walk_data_tree(new, data_mask, context_mask) 16. │ └─tidyselect:::as_indices_sel_impl(...) 17. │ └─tidyselect:::as_indices_impl(...) 18. │ └─tidyselect:::chr_as_locations(x, vars, call = call, arg = arg) 19. │ └─vctrs::vec_as_location(...) 20. └─vctrs (local) ``() 21. └─vctrs:::stop_subscript_oob(...) 22. └─vctrs:::stop_subscript(...) 23. └─rlang::abort(...) ── Error ('test-rasterToLineSegments.R:8:3'): inspect line segments ──────────── Error in `stopifnot(!inherits(x, "sf"), !missing(sf_column_name), !missing(agr))`: ℹ In argument: `len = sf::st_length(.data$x)`. Caused by error in `.data$x`: ! Column `x` not found in `.data`. [ FAIL 2 | WARN 0 | SKIP 0 | PASS 49 ] Error: Test failures Execution halted Package: sfnetworks Check: tests New result: ERROR Running ‘testthat.R’ [17s/17s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(sfnetworks) > > test_check("sfnetworks") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 231 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_sf.R:4:1'): (code run outside of `test_that()`) ──────────────── Error in `st_sf(x, ..., agr = agr, sf_column_name = sf_column_name)`: no simple features geometry column present Backtrace: ▆ 1. ├─... %>% st_as_sf(foo = "bar") at test_sf.R:4:1 2. ├─sf::st_as_sf(., foo = "bar") 3. └─sf:::st_as_sf.sfc(., foo = "bar") 4. ├─sf::st_as_sf(data.frame(x), ...) 5. └─sf:::st_as_sf.data.frame(data.frame(x), ...) 6. └─sf::st_sf(x, ..., agr = agr, sf_column_name = sf_column_name) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 231 ] Error: Test failures Execution halted Package: spbal Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘spbal.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/spbal.Rcheck/vign_test/spbal/vignettes/spbal_files/figure-html/BASex1c-1.png 768x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 44801 bytes Input file size = 44939 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36430 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36430 Output IDAT size = 36430 bytes (8371 bytes decrease) Output file size = 36508 bytes (8431 bytes = 18.76% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/spbal.Rcheck/vign_test/spbal/vignettes/spbal_files/figure-html/BASex5a-1.png 768x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 47231 bytes Input file size = 47369 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37280 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37280 Output IDAT size = 37280 bytes (9951 bytes decrease) Output file size = 37358 bytes (10011 bytes = 21.13% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/spbal.Rcheck/vign_test/spbal/vignettes/spbal_files/figure-html/BASex10a-1.png 768x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46710 bytes Input file size = 46848 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36820 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36820 Output IDAT size = 36820 bytes (9890 bytes decrease) Output file size = 36898 bytes (9950 bytes = 21.24% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/spbal.Rcheck/vign_test/spbal/vignettes/spbal_files/figure-html/BASex13a-1.png 768x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 47961 bytes Input file size = 48099 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37665 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37665 Output IDAT size = 37665 bytes (10296 bytes decrease) Output file size = 37743 bytes (10356 bytes = 21.53% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/spbal.Rcheck/vign_test/spbal/vignettes/spbal_files/figure-html/BASex16a-1.png 768x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 47155 bytes Input file size = 47293 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37660 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37660 Output IDAT size = 37660 bytes (9495 bytes decrease) Output file size = 37738 bytes (9555 bytes = 20.20% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/spbal.Rcheck/vign_test/spbal/vignettes/spbal_files/figure-html/BASex19a-1.png 768x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51686 bytes Input file size = 51836 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41414 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41414 Output IDAT size = 41414 bytes (10272 bytes decrease) Output file size = 41492 bytes (10344 bytes = 19.96% decrease) Quitting from lines 573-599 [HFex1b] (spbal.Rmd) Error: processing vignette 'spbal.Rmd' failed with diagnostics: Problem while computing aesthetics. ℹ Error occurred in the 3rd layer. Caused by error: ! object 'x' not found --- failed re-building ‘spbal.Rmd’ SUMMARY: processing the following file failed: ‘spbal.Rmd’ Error: Vignette re-building failed. Execution halted Package: spdep Check: examples New result: ERROR Running examples in ‘spdep-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: poly2nb > ### Title: Construct neighbours list from polygon list > ### Aliases: poly2nb > ### Keywords: spatial > > ### ** Examples > > columbus <- st_read(system.file("shapes/columbus.gpkg", package="spData")[1], quiet=TRUE) > col.gal.nb <- read.gal(system.file("weights/columbus.gal", package="spData")[1]) > coords <- st_coordinates(st_centroid(st_geometry(columbus))) > xx <- poly2nb(as(columbus, "Spatial")) > dxx <- diffnb(xx, col.gal.nb) > plot(st_geometry(columbus), border="grey") > plot(col.gal.nb, coords, add=TRUE) > plot(dxx, coords, add=TRUE, col="red") > title(main=paste("Differences (red) in Columbus GAL weights (black)", + "and polygon generated queen weights", sep="\n"), cex.main=0.6) > # poly2nb with sf sfc_MULTIPOLYGON objects > sf_xx <- poly2nb(columbus) > diffnb(sf_xx, xx) Neighbour list object: Number of regions: 49 Number of nonzero links: 0 Percentage nonzero weights: 0 Average number of links: 0 49 regions with no links: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 49 disjoint connected subgraphs > sfc_xx <- poly2nb(st_geometry(columbus)) > diffnb(sfc_xx, xx) Neighbour list object: Number of regions: 49 Number of nonzero links: 0 Percentage nonzero weights: 0 Average number of links: 0 49 regions with no links: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 49 disjoint connected subgraphs > xxx <- poly2nb(as(columbus, "Spatial"), queen=FALSE) > dxxx <- diffnb(xxx, col.gal.nb) > plot(st_geometry(columbus), border = "grey") > plot(col.gal.nb, coords, add = TRUE) > plot(dxxx, coords, add = TRUE, col = "red") > title(main=paste("Differences (red) in Columbus GAL weights (black)", + "and polygon generated rook weights", sep="\n"), cex.main=0.6) > cards <- card(xx) > maxconts <- which(cards == max(cards)) > if(length(maxconts) > 1) maxconts <- maxconts[1] > fg <- rep("grey", length(cards)) > fg[maxconts] <- "red" > fg[xx[[maxconts]]] <- "green" > plot(st_geometry(columbus), col=fg) > title(main="Region with largest number of contiguities", cex.main=0.6) > nc.sids <- st_read(system.file("shapes/sids.gpkg", package="spData")[1], quiet=TRUE) > system.time(xxnb <- poly2nb(nc.sids)) user system elapsed 0.047 0.000 0.047 > system.time(xxnb <- poly2nb(as(nc.sids, "Spatial"))) user system elapsed 0.075 0.000 0.075 > plot(st_geometry(nc.sids)) > plot(xxnb, st_coordinates(st_centroid(nc.sids)), add=TRUE, col="blue") Warning: st_centroid assumes attributes are constant over geometries > sq <- st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)))) > sq2 <- sq + c(0,1) > sq3 <- sq + c(1,0) > sq4 <- sq + c(1,1) > gm <- st_sfc(list(sq, sq2, sq3, sq4)) > df <- st_as_sf(gm, id=1:4) Error in st_sf(x, ..., agr = agr, sf_column_name = sf_column_name) : no simple features geometry column present Calls: st_as_sf ... st_as_sf.sfc -> st_as_sf -> st_as_sf.data.frame -> st_sf Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed localmoran_bv 7.551 0.223 8.178 Package: ulex Check: examples New result: ERROR Running examples in ‘ulex-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: locate_event > ### Title: Locate Event > ### Aliases: locate_event > > ### ** Examples > > library(ulex) > library(sf) Linking to GEOS 3.12.2, GDAL 3.9.2, PROJ 9.4.1; sf_use_s2() is TRUE > > ## Landmarks > landmarks_sf <- data.frame(lat = runif(3), + lon = runif(3), + name = c("restaurant", "bank", "hotel"), + type = c("poi", "poi", "poi")) |> + st_as_sf(coords = c("lon", "lat"), + crs = 4326) > > ## Road > coords <- matrix(runif(4), ncol = 2) > road_sf <- coords |> + st_linestring() |> + st_sfc(crs = 4326) > road_sf <- st_sf(geometry = road_sf) > road_sf$name <- "main st" > > ## Area > n <- 5 > coords <- matrix(runif(2 * n, min = 0, max = 10), ncol = 2) > coords <- rbind(coords, coords[1,]) > polygon <- st_polygon(list(coords)) > area_sf <- st_sfc(polygon, crs = 4326) > area_sf <- st_sf(geometry = area_sf) > area_sf$name <- "place" > > ## Locate Event > event_sf <- locate_event(text = "accident near hotel", + landmark_gazetteer = landmarks_sf, + roads = road_sf, + areas = area_sf, + event_words = c("accident", "crash")) Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Warning in FUN(X[[i]], ...) : phrase is not in sentence Error in `.data$x`: ! Column `x` not found in `.data`. Backtrace: ▆ 1. ├─ulex::locate_event(...) 2. │ ├─... %>% bind_rows() 3. │ └─base::lapply(...) 4. │ └─ulex (local) FUN(X[[i]], ...) 5. │ └─... %>% bind_cols(df_out) 6. ├─dplyr::bind_rows(.) 7. │ └─rlang::list2(...) 8. ├─dplyr::bind_cols(., df_out) 9. │ └─rlang::list2(...) 10. ├─dplyr::select(., "geometry") 11. ├─dplyr::rename(., geometry = .data$x) 12. ├─sf:::rename.sf(., geometry = .data$x) 13. │ └─tidyselect::eval_rename(quote(c(...)), .data) 14. │ └─tidyselect:::rename_impl(...) 15. │ └─tidyselect:::eval_select_impl(...) 16. │ ├─tidyselect:::with_subscript_errors(...) 17. │ │ └─base::withCallingHandlers(...) 18. │ └─tidyselect:::vars_select_eval(...) 19. │ └─tidyselect:::walk_data_tree(expr, data_mask, context_mask) 20. │ └─tidyselect:::eval_c(expr, data_mask, context_mask) 21. │ └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init) 22. │ └─tidyselect:::walk_data_tree(new, data_mask, context_mask) 23. │ └─base::eval(expr, data_mask) 24. │ └─base::eval(expr, data_mask) 25. │ ├─x 26. │ └─rlang:::`$.rlang_data_pronoun`(.data, x) 27. │ └─rlang:::data_pronoun_get(...) 28. └─rlang:::abort_data_pronoun(x, call = y) 29. └─rlang::abort(msg, "rlang_error_data_pronoun_not_found", call = call) Execution halted Package: waywiser Check: tests New result: ERROR Running ‘testthat.R’ [290s/147s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(waywiser) > > test_check("waywiser") Starting 2 test processes [ FAIL 1 | WARN 0 | SKIP 144 | PASS 290 ] ══ Skipped tests (144) ═════════════════════════════════════════════════════════ • On CRAN (144): 'test-global_geary.R:10:3', 'test-global_moran.R:10:3', 'test-local_geary.R:12:3', 'test-local_getis.R:11:3', 'test-local_getis.R:66:3', 'test-local_moran.R:11:3', 'test-misc.R:4:3', 'test-misc.R:14:3', 'test-misc.R:24:3', 'test-misc.R:51:3', 'test-misc.R:82:3', 'test-misc_yardstick.R:6:3', 'test-misc_yardstick.R:17:3', 'test-area_of_applicability.R:38:3', 'test-area_of_applicability.R:148:3', 'test-area_of_applicability.R:222:3', 'test-area_of_applicability.R:265:3', 'test-area_of_applicability.R:280:3', 'test-area_of_applicability.R:294:3', 'test-srr-ww_agreement_coefficient.R:7:3', 'test-srr-ww_agreement_coefficient.R:19:3', 'test-srr-ww_agreement_coefficient.R:42:3', 'test-srr-ww_agreement_coefficient.R:56:3', 'test-srr-ww_agreement_coefficient.R:98:3', 'test-srr-ww_agreement_coefficient.R:116:3', 'test-srr-ww_agreement_coefficient.R:145:3', 'test-srr-ww_area_of_applicability.R:33:3', 'test-srr-ww_global_geary_c.R:16:3', 'test-srr-ww_global_geary_c.R:270:3', 'test-multi_scale.R:33:3', 'test-multi_scale.R:97:3', 'test-multi_scale.R:144:3', 'test-multi_scale.R:475:3', 'test-multi_scale.R:670:3', 'test-srr-ww_global_moran_i.R:16:3', 'test-srr-ww_global_moran_i.R:270:3', 'test-srr-ww_global_geary_pvalue.R:16:3', 'test-srr-ww_global_geary_pvalue.R:270:3', 'test-srr-ww_global_moran_pvalue.R:16:3', 'test-srr-ww_global_moran_pvalue.R:270:3', 'test-srr-ww_local_geary_c.R:16:3', 'test-srr-ww_local_geary_c.R:270:3', 'test-srr-ww_local_getis_ord_g.R:16:3', 'test-srr-ww_local_getis_ord_g.R:270:3', 'test-srr-ww_local_geary_pvalue.R:16:3', 'test-srr-ww_local_geary_pvalue.R:270:3', 'test-srr-ww_local_getis_ord_g_pvalue.R:16:3', 'test-srr-ww_local_getis_ord_g_pvalue.R:270:3', 'test-srr-ww_local_moran_i.R:16:3', 'test-srr-ww_local_moran_i.R:270:3', 'test-srr-ww_systematic_agreement_coefficient.R:7:3', 'test-srr-ww_systematic_agreement_coefficient.R:19:3', 'test-srr-ww_systematic_agreement_coefficient.R:42:3', 'test-srr-ww_systematic_agreement_coefficient.R:56:3', 'test-srr-ww_systematic_agreement_coefficient.R:98:3', 'test-srr-ww_systematic_agreement_coefficient.R:116:3', 'test-srr-ww_systematic_agreement_coefficient.R:145:3', 'test-srr-ww_systematic_mpd.R:7:3', 'test-srr-ww_systematic_mpd.R:19:3', 'test-srr-ww_systematic_mpd.R:42:3', 'test-srr-ww_systematic_mpd.R:56:3', 'test-srr-ww_systematic_mpd.R:98:3', 'test-srr-ww_systematic_mpd.R:116:3', 'test-srr-ww_systematic_mpd.R:145:3', 'test-srr-ww_systematic_mse.R:7:3', 'test-srr-ww_systematic_mse.R:19:3', 'test-srr-ww_systematic_mse.R:42:3', 'test-srr-ww_systematic_mse.R:56:3', 'test-srr-ww_systematic_mse.R:98:3', 'test-srr-ww_systematic_mse.R:116:3', 'test-srr-ww_systematic_mse.R:145:3', 'test-srr-ww_systematic_rmpd.R:7:3', 'test-srr-ww_systematic_rmpd.R:19:3', 'test-srr-ww_systematic_rmpd.R:42:3', 'test-srr-ww_systematic_rmpd.R:56:3', 'test-srr-ww_systematic_rmpd.R:98:3', 'test-srr-ww_systematic_rmpd.R:116:3', 'test-srr-ww_systematic_rmpd.R:145:3', 'test-srr-ww_systematic_rmse.R:7:3', 'test-srr-ww_systematic_rmse.R:19:3', 'test-srr-ww_systematic_rmse.R:42:3', 'test-srr-ww_systematic_rmse.R:56:3', 'test-srr-ww_systematic_rmse.R:98:3', 'test-srr-ww_systematic_rmse.R:116:3', 'test-srr-ww_systematic_rmse.R:145:3', 'test-srr-ww_unsystematic_agreement_coefficient.R:7:3', 'test-srr-ww_unsystematic_agreement_coefficient.R:19:3', 'test-srr-ww_unsystematic_agreement_coefficient.R:42:3', 'test-srr-ww_unsystematic_agreement_coefficient.R:56:3', 'test-srr-ww_unsystematic_agreement_coefficient.R:98:3', 'test-srr-ww_unsystematic_agreement_coefficient.R:116:3', 'test-srr-ww_unsystematic_agreement_coefficient.R:145:3', 'test-srr-ww_unsystematic_mpd.R:7:3', 'test-srr-ww_unsystematic_mpd.R:19:3', 'test-srr-ww_unsystematic_mpd.R:42:3', 'test-srr-ww_unsystematic_mpd.R:56:3', 'test-srr-ww_unsystematic_mpd.R:98:3', 'test-srr-ww_unsystematic_mpd.R:116:3', 'test-srr-ww_unsystematic_mpd.R:145:3', 'test-srr-ww_unsystematic_mse.R:7:3', 'test-srr-ww_unsystematic_mse.R:19:3', 'test-srr-ww_unsystematic_mse.R:42:3', 'test-srr-ww_unsystematic_mse.R:56:3', 'test-srr-ww_unsystematic_mse.R:98:3', 'test-srr-ww_unsystematic_mse.R:116:3', 'test-srr-ww_unsystematic_mse.R:145:3', 'test-srr-ww_unsystematic_rmpd.R:7:3', 'test-srr-ww_unsystematic_rmpd.R:19:3', 'test-srr-ww_unsystematic_rmpd.R:42:3', 'test-srr-ww_unsystematic_rmpd.R:56:3', 'test-srr-ww_unsystematic_rmpd.R:98:3', 'test-srr-ww_unsystematic_rmpd.R:116:3', 'test-srr-ww_unsystematic_rmpd.R:145:3', 'test-srr-ww_unsystematic_rmse.R:7:3', 'test-srr-ww_unsystematic_rmse.R:19:3', 'test-srr-ww_unsystematic_rmse.R:42:3', 'test-srr-ww_unsystematic_rmse.R:56:3', 'test-srr-ww_unsystematic_rmse.R:98:3', 'test-srr-ww_unsystematic_rmse.R:116:3', 'test-srr-ww_unsystematic_rmse.R:145:3', 'test-srr-ww_willmott_d.R:7:3', 'test-srr-ww_willmott_d.R:19:3', 'test-srr-ww_willmott_d.R:42:3', 'test-srr-ww_willmott_d.R:56:3', 'test-srr-ww_willmott_d.R:98:3', 'test-srr-ww_willmott_d.R:116:3', 'test-srr-ww_willmott_d.R:145:3', 'test-srr-ww_willmott_d1.R:7:3', 'test-srr-ww_willmott_d1.R:19:3', 'test-srr-ww_willmott_d1.R:42:3', 'test-srr-ww_willmott_d1.R:56:3', 'test-srr-ww_willmott_d1.R:98:3', 'test-srr-ww_willmott_d1.R:116:3', 'test-srr-ww_willmott_d1.R:145:3', 'test-srr-ww_willmott_dr.R:7:3', 'test-srr-ww_willmott_dr.R:19:3', 'test-srr-ww_willmott_dr.R:42:3', 'test-srr-ww_willmott_dr.R:56:3', 'test-srr-ww_willmott_dr.R:98:3', 'test-srr-ww_willmott_dr.R:116:3', 'test-srr-ww_willmott_dr.R:145:3', 'test-tidy_importance.R:31:3', 'test-srr-ww_local_moran_pvalue.R:16:3', 'test-srr-ww_local_moran_pvalue.R:270:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-multi_scale.R:602:5'): counts of non-NA values are correct ───── Error in ``[.data.frame`(x, i)`: undefined columns selected Backtrace: ▆ 1. └─base::vapply(...) at test-multi_scale.R:600:3 2. └─waywiser (local) FUN(X[[i]], ...) 3. ├─base::nrow(...) at test-multi_scale.R:602:5 4. ├─sf::st_intersection((ww_output$.grid[[1]][idx, ]["x"]), pts["x"]) 5. ├─ww_output$.grid[[1]][idx, ]["x"] 6. └─sf:::`[.sf`(ww_output$.grid[[1]][idx, ], "x") 7. ├─x[i] 8. └─base::`[.data.frame`(x, i) [ FAIL 1 | WARN 0 | SKIP 144 | PASS 290 ] Error: Test failures Execution halted