Sys.setenv(TZ="UTC") suppressPackageStartupMessages(library(sf)) if ("GPKG" %in% st_drivers()$name) { tst = st_read(system.file("gpkg/nc.gpkg", package="sf"), "nc.gpkg", crs = 4267, quiet = TRUE) tst = st_read(system.file("gpkg/nc.gpkg", package="sf"), quiet = TRUE) # default layer name } tst = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE) # no layer specified # data from https://github.com/edzer/sfr/issues/6 tst = st_read(system.file("shape/storms_xyz.shp", package="sf"), quiet = TRUE) class(st_geometry(tst)) class(st_geometry(tst)[[1]]) tst = st_read(system.file("shape/storms_xyzm.shp", package="sf"), quiet = TRUE) class(st_geometry(tst)) class(st_geometry(tst)[[1]]) tst = st_read(system.file("shape/storms_xyz_feature.shp", package="sf"), quiet = TRUE) class(st_geometry(tst)) class(st_geometry(tst)[[1]]) tst = st_read(system.file("shape/storms_xyzm_feature.shp", package="sf"), quiet = TRUE) class(st_geometry(tst)) class(st_geometry(tst)[[1]]) if ("GPKG" %in% st_drivers()$name) { # read Int64 print(st_read(system.file("gpkg/tl.gpkg", package="sf"), quiet = TRUE)$AWATER) print(st_read(system.file("gpkg/tl.gpkg", package="sf"), quiet = TRUE, int64_as_string = TRUE)$AWATER) } # see https://github.com/edzer/sfr/issues/45 : if ("OSM" %in% st_drivers()$name && Sys.info()['sysname'] != "Darwin") { osm = system.file("osm/overpass.osm", package="sf") osm_l = st_layers(osm) osm_lc = suppressWarnings(st_layers(osm, do_count = TRUE)) osm_r = suppressWarnings(st_read(osm, "multipolygons", quiet = TRUE)) } # layer opening option: st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE, options = c("ADJUST_TYPE=YES", "ENCODING=CPL_ENC_UTF8")) x <- st_sf(a = 1:2, geom = st_sfc(st_point(0:1), st_multipoint(matrix(1:4,2,2)))) try(st_layers("foo")) # cannot open datasource try(st_read("foo")) # cannot open datasource try(st_read("x.gpkg", "xyz")) # cannot open layer try(st_write(c("foo", "bar"))) try(st_write(x, c("foo", "bar"))) try(st_write(x, "foo", driver = "foo")) if (Sys.getenv("USER") == "travis") { try(st_write(x, "/x", driver = "ESRI Shapefile")) st_write(x, "xxx.gpkg") st_write(x, "xxx.gpkg", append = TRUE, quiet = FALSE) # appends to layer y <- st_sf(b = 1:2, geom = st_sfc(st_point(0:1), st_multipoint(matrix(1:4,2,2)))) try(st_write(y, "xxx.gpkg")) } geom = st_sfc(st_point(0:1), st_multipoint(matrix(1:4,2,2))) st_write(geom, "geom.gpkg") st_write(geom, "geom1.gpkg", layer = "foo") df <- data.frame( a = c(0, 1, NA, -Inf, Inf), b = c("a", "b", NA, "c", ""), c = c(as.Date("2001-01-01"), as.Date(c(NA, -99, 0, 1), origin = "1970-01-01")), d = c(as.POSIXct("2001-01-01"), as.POSIXct(c(NA, -99, 0, 1), origin = "1970-01-01")), x = 1:5, y = 1:5) x = st_as_sf(df, coords = c("x", "y")) if ("GPKG" %in% st_drivers()$name) { st_write(x, "x2.gpkg", quiet = TRUE) y = st_read("x2.gpkg", quiet = TRUE) print(y) } if ("SQLite" %in% st_drivers()$name && require(RSQLite)) { db = system.file("sqlite/meuse.sqlite", package = "sf") dbcon <- dbConnect(dbDriver("SQLite"), db) m = dbReadTable(dbcon, "meuse.sqlite") m$GEOMETRY = st_as_sfc(m$GEOMETRY, spatialite = FALSE) # ISO wkb print(st_sf(m), n = 3) # or: (s = st_read(dbcon, "meuse.sqlite"))[1:3,] dbDisconnect(dbcon) db = system.file("sqlite/nc.sqlite", package = "sf") dbcon <- dbConnect(dbDriver("SQLite"), db) m = dbReadTable(dbcon, "nc.sqlite") m$GEOMETRY = st_as_sfc(m$GEOMETRY, spatialite = FALSE) # ISO wkb print(st_sf(m), n = 3) dbDisconnect(dbcon) db = system.file("sqlite/b.sqlite", package = "sf") # has an INT8 field b = st_read(db, quiet = TRUE) print(b) b = st_read(db, int64_as_string = TRUE, quiet = TRUE) print(b) if (.Platform$endian == "little") { db = system.file("sqlite/test3.sqlite", package = "sf") dbcon <- dbConnect(dbDriver("SQLite"), db) m = dbReadTable(dbcon, "HighWays") m$Geometry = st_as_sfc(m$Geometry, spatialite = TRUE) # spatialite wkb print(st_sf(m), n = 3) m = dbReadTable(dbcon, "Towns") m$Geometry = st_as_sfc(m$Geometry, spatialite = TRUE) # spatialite wkb print(st_sf(m), n = 3) m = dbReadTable(dbcon, "Regions") m$Geometry = st_as_sfc(m$Geometry, spatialite = TRUE) # spatialite wkb print(st_sf(m), n = 3) } } csv = system.file("csv/pt.csv", package = "sf") identical(st_read(quiet = TRUE, csv, options = "AUTODETECT_TYPE=Yes")$Int64[3], NA_real_) identical(st_read(quiet = TRUE, csv, int64_as_string = TRUE, stringsAsFactors = FALSE, options = "AUTODETECT_TYPE=Yes")$Int64[3], NA_character_) identical(st_read(quiet = TRUE, csv, options = "AUTODETECT_TYPE=Yes")$Int32[3], NA_integer_) if ("GML" %in% st_drivers()$name) { gml = system.file("gml/fmi_test.gml", package = "sf") print(dim(st_read(gml, quiet = TRUE, use_stream = FALSE))) gml = system.file("gml/20170930_OB_530964_UKSH.xml.gz", package = "sf") print(dim(st_read(gml, layer = "Parcely", quiet = TRUE, use_stream = FALSE))) print(dim(st_read(gml, layer = "Parcely", int64_as_string=TRUE, quiet = TRUE, use_stream = FALSE))) } # logical: if ("GPKG" %in% st_drivers()$name) { tst = read_sf(system.file("gpkg/nc.gpkg", package="sf"), quiet = TRUE) # default layer name tst$bool = tst$NWBIR79 > 800 # logical tst$bool[1:3] = NA write_sf(tst, "tst__.gpkg") tst2 = read_sf("tst__.gpkg") stopifnot(identical(tst$bool, tst2$bool)) } # spatial filter: nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) wkt = st_as_text(st_geometry(nc[1,])) wkt nc_filtered = read_sf(system.file("gpkg/nc.gpkg", package="sf"), wkt_filter = wkt) try(read_sf(system.file("gpkg/nc.gpkg", package="sf"), wkt_filter = "wrong")) nc_filtered$NAME