test_that("weibull_model returns same result as in the book", { expected_coefs <- c(-0.27596492, 0.38073667) # page 97 expected_beta_0_hat <- 0.759 df <- hcv_be_2006[order(hcv_be_2006$dur), ] model <- weibull_model( t=df$dur, status=df$seropositive ) actual_coefs <- unname(c( coef(model$info)[1], # intercept coef(model$info)[2] )) actual_beta_0_hat <- exp(unname(coef(model$info)[1])) expect_equal(actual_coefs, expected_coefs, tolerance=0.000001) expect_equal(actual_beta_0_hat, expected_beta_0_hat, tolerance=0.001) # make sure helper works fine expect_no_error(compute_ci.weibull_model(model)) expect_no_error(plot(model)) })