R version 4.6.0 alpha (2026-03-28 r89738 ucrt) Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(seroreconstruct) > > test_check("seroreconstruct") Fitting group: 0 MCMC complete in 4 seconds. Use summary() to view estimates. Fitting group: 1 MCMC complete in 4 seconds. Use summary() to view estimates. Fitting group: 2 MCMC complete in 1 seconds. Use summary() to view estimates. Fitting group: 0 MCMC complete in 3 seconds. Use summary() to view estimates. Fitting group: 1 MCMC complete in 4 seconds. Use summary() to view estimates. Fitting group: 2 MCMC complete in 2 seconds. Use summary() to view estimates. Fitting group: 0 MCMC complete in 3 seconds. Use summary() to view estimates. Fitting group: 1 MCMC complete in 4 seconds. Use summary() to view estimates. Fitting group: 2 MCMC complete in 1 seconds. Use summary() to view estimates. Fitting group: 0 MCMC complete in 3 seconds. Use summary() to view estimates. Fitting group: 1 MCMC complete in 4 seconds. Use summary() to view estimates. Fitting group: 2 MCMC complete in 2 seconds. Use summary() to view estimates. Fitting group: 0 MCMC complete in 3 seconds. Use summary() to view estimates. Fitting group: 1 MCMC complete in 4 seconds. Use summary() to view estimates. Fitting group: 2 MCMC complete in 1 seconds. Use summary() to view estimates. MCMC complete in 9 seconds. Use summary() to view estimates. MCMC complete in 9 seconds. Use summary() to view estimates. MCMC complete in 8 seconds. Use summary() to view estimates. Fitting group: 0 MCMC complete in 4 seconds. Use summary() to view estimates. Fitting group: 1 MCMC complete in 3 seconds. Use summary() to view estimates. Fitting group: 2 MCMC complete in 1 seconds. Use summary() to view estimates. MCMC complete in 8 seconds. Use summary() to view estimates. MCMC complete in 8 seconds. Use summary() to view estimates. MCMC complete in 9 seconds. Use summary() to view estimates. Fitting group: 0 MCMC complete in 3 seconds. Use summary() to view estimates. Fitting group: 1 MCMC complete in 3 seconds. Use summary() to view estimates. Fitting group: 2 MCMC complete in 1 seconds. Use summary() to view estimates. MCMC complete in 8 seconds. Use summary() to view estimates. MCMC complete in 8 seconds. Use summary() to view estimates. MCMC complete in 8 seconds. Use summary() to view estimates. MCMC complete in 8 seconds. Use summary() to view estimates. MCMC complete in 8 seconds. Use summary() to view estimates. MCMC complete in 8 seconds. Use summary() to view estimates. MCMC complete in 8 seconds. Use summary() to view estimates. MCMC complete in 9 seconds. Use summary() to view estimates. MCMC complete in 8 seconds. Use summary() to view estimates. MCMC complete in 9 seconds. Use summary() to view estimates. MCMC complete in 2 seconds. Use summary() to view estimates. MCMC complete in 9 seconds. Use summary() to view estimates. Variable 1 Random error (%) 2 Two-fold error (%) 3 Fold-increase after infection for children (Boosting) 4 Fold-decrease after 1 year for children (Waning) 5 Fold-increase after 1 year for adults (Boosting) 6 Fold-decrease after 1 year for adults (Waning) 7 Infection probability for children 8 Infection probability for adults 9 Infection probability for older adults 10 Infection probability for children with pre-epidemic HAI titer < 10 11 Infection probability for adults with pre-epidemic HAI titer < 10 12 Infection probability for older adults with pre-epidemic HAI titer < 10 13 Relative risk for children (Ref: Adults) 14 Relative risk for older adults (Ref: Adults) 15 Relative risk for children with pre-epidemic HAI titer < 10 (Ref: Adults with pre-epidemic HAI titer < 10) 16 Relative risk for older adults with pre-epidemic HAI titer < 10 (Ref: Adults with pre-epidemic HAI titer < 10) Point estimate Lower bound Upper bound 1 7.58 6.45 8.69 2 3.44 4.45 2.92 3 2.22 2.13 2.44 4 1.23 1.15 1.35 5 3.01 2.35 3.75 6 1.35 1.27 1.46 7 0.26 0.23 0.29 8 0.18 0.15 0.21 9 0.11 0.07 0.18 10 0.40 0.35 0.46 11 0.22 0.19 0.26 12 0.14 0.09 0.23 13 1.44 1.14 1.74 14 1.84 1.48 2.29 15 0.62 0.37 1.09 16 0.62 0.38 1.09 MCMC complete in 9 seconds. Use summary() to view estimates. MCMC complete in 8 seconds. Use summary() to view estimates. MCMC complete in 9 seconds. Use summary() to view estimates. MCMC complete in 8 seconds. Use summary() to view estimates. MCMC complete in 1 seconds. Use summary() to view estimates. MCMC complete in 9 seconds. Use summary() to view estimates. Fitting joint model with 2 groups (0, 1) Shared parameters: error, boosting_waning MCMC complete in 8 seconds. Use summary() to view estimates. Fitting joint model with 2 groups (0, 1) Shared parameters: error, boosting_waning MCMC complete in 8 seconds. Use summary() to view estimates. Fitting joint model with 2 groups (0, 1) Shared parameters: error, boosting_waning MCMC complete in 8 seconds. Use summary() to view estimates. Fitting joint model with 2 groups (0, 1) Shared parameters: error, boosting_waning MCMC complete in 8 seconds. Use summary() to view estimates. Fitting joint model with 2 groups (0, 1) Shared parameters: error, boosting_waning MCMC complete in 8 seconds. Use summary() to view estimates. Fitting group: 0 MCMC complete in 4 seconds. Use summary() to view estimates. Fitting group: 1 MCMC complete in 3 seconds. Use summary() to view estimates. MCMC complete in 9 seconds. Use summary() to view estimates. MCMC complete in 9 seconds. Use summary() to view estimates. MCMC complete in 9 seconds. Use summary() to view estimates. Fitting group: 0 MCMC complete in 3 seconds. Use summary() to view estimates. Fitting group: 1 MCMC complete in 4 seconds. Use summary() to view estimates. Fitting group: 2 MCMC complete in 1 seconds. Use summary() to view estimates. MCMC complete in 8 seconds. Use summary() to view estimates. MCMC complete in 9 seconds. Use summary() to view estimates. Fitting group: 0 MCMC complete in 3 seconds. Use summary() to view estimates. Fitting group: 1 MCMC complete in 4 seconds. Use summary() to view estimates. Fitting group: 2 MCMC complete in 1 seconds. Use summary() to view estimates. MCMC complete in 8 seconds. Use summary() to view estimates. [ FAIL 0 | WARN 0 | SKIP 0 | PASS 132 ] > > proc.time() user system elapsed 367.81 122.01 367.12