* using log directory 'd:/RCompile/CRANincoming/R-devel/serocalculator.Rcheck'
* using R Under development (unstable) (2024-05-16 r86559 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'serocalculator/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'serocalculator' version '1.0.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Kristina Lai <kwlai@ucdavis.edu>'

New submission

Possibly misspelled words in DESCRIPTION:
  Serological (3:40)
  seroconversions (12:54)
  seroincidence (13:60)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'serocalculator' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [155s] NOTE
Examples with CPU (user + system) or elapsed time > 10s
                           user system elapsed
sim.cs                    19.76   0.18   22.96
log_likelihood            10.00   0.01   13.37
autoplot.seroincidence.by  9.34   0.03   15.12
autoplot.seroincidence     7.88   0.04   13.35
est.incidence.by           3.33   0.03   10.14
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... OK
  Running 'testthat.R'
* checking PDF version of manual ... [14s] OK
* checking HTML version of manual ... NOTE
Found the following HTML validation problems:
sim.cs.html:157:1 (sim.cs.Rd:72): Warning: trimming empty <dt>
* DONE
Status: 3 NOTEs