* installing *source* package 'seqtrie' ... ** this is package 'seqtrie' version '0.3.5' ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 14.2.0' using C++17 g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_PARALLEL_USE_TBB=1 -DSEQTRIE_SMALL_ARRAY_SIZE=32 -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.6/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CharCounter.cpp -o CharCounter.o In file included from CharCounter.cpp:1: seqtrie_types.h: In function 'CostMap convert_cost_matrix(Rcpp::IntegerMatrix, int, int)': seqtrie_types.h:193:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 193 | for(size_t i = 0; i < rownames.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ seqtrie_types.h:204:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 204 | for(size_t i = 0; i < rownames.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_PARALLEL_USE_TBB=1 -DSEQTRIE_SMALL_ARRAY_SIZE=32 -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.6/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RadixForest.cpp -o RadixForest.o In file included from RadixForest.cpp:1: seqtrie_types.h: In function 'CostMap convert_cost_matrix(Rcpp::IntegerMatrix, int, int)': seqtrie_types.h:193:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 193 | for(size_t i = 0; i < rownames.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ seqtrie_types.h:204:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 204 | for(size_t i = 0; i < rownames.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_PARALLEL_USE_TBB=1 -DSEQTRIE_SMALL_ARRAY_SIZE=32 -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.6/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RadixTree.cpp -o RadixTree.o In file included from RadixTree.cpp:1: seqtrie_types.h: In function 'CostMap convert_cost_matrix(Rcpp::IntegerMatrix, int, int)': seqtrie_types.h:193:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 193 | for(size_t i = 0; i < rownames.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ seqtrie_types.h:204:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 204 | for(size_t i = 0; i < rownames.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_PARALLEL_USE_TBB=1 -DSEQTRIE_SMALL_ARRAY_SIZE=32 -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.6/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: seqtrie_types.h: In function 'CostMap convert_cost_matrix(Rcpp::IntegerMatrix, int, int)': seqtrie_types.h:193:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 193 | for(size_t i = 0; i < rownames.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ seqtrie_types.h:204:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 204 | for(size_t i = 0; i < rownames.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_PARALLEL_USE_TBB=1 -DSEQTRIE_SMALL_ARRAY_SIZE=32 -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.6/BH/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pairwise.cpp -o pairwise.o In file included from pairwise.cpp:1: seqtrie_types.h: In function 'CostMap convert_cost_matrix(Rcpp::IntegerMatrix, int, int)': seqtrie_types.h:193:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 193 | for(size_t i = 0; i < rownames.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ seqtrie_types.h:204:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 204 | for(size_t i = 0; i < rownames.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~ In file included from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/aux_/na_assert.hpp:23, from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/arg.hpp:25, from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/placeholders.hpp:24, from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/apply.hpp:24, from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/serialization/array_optimization.hpp:18, from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/serialization/array_wrapper.hpp:21, from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/serialization/array.hpp:26, from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/numeric/ublas/storage.hpp:22, from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/numeric/ublas/vector.hpp:21, from D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/numeric/ublas/matrix.hpp:18, from ../inst/include/seqtrie/pairwise.h:24, from pairwise.cpp:2: D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/assert.hpp: At global scope: D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ D:/RCompile/CRANpkg/lib/4.6/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - g++ -shared -s -static-libgcc -o seqtrie.dll tmp.def CharCounter.o RadixForest.o RadixTree.o RcppExports.o pairwise.o -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64 -ltbb -ltbbmalloc -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-seqtrie/00new/seqtrie/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (seqtrie)