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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(seqimpute) > > test_check("seqimpute") iteration : 1 / 2 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Imputation of the terminal gaps..." iteration : 2 / 2 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Imputation of the terminal gaps..." iteration : 1 / 1 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Imputation of the terminal gaps..." TraMineR stable version 2.2-11 (Built: 2025-01-13) Website: http://traminer.unige.ch Please type 'citation("TraMineR")' for citation information. [>] found missing values ('NA') in sequence data [>] preparing 500 sequences [>] coding void elements with '%' and missing values with '*' [>] 2 distinct states appear in the data: 1 = no 2 = yes [>] state coding: [alphabet] [label] [long label] 1 no no no 2 yes yes yes [>] 500 sequences in the data set [>] min/max sequence length: 4/4 [>] found missing values ('NA') in sequence data [>] preparing 500 sequences [>] coding void elements with '%' and missing values with '*' [>] 2 distinct states appear in the data: 1 = no 2 = yes [>] state coding: [alphabet] [label] [long label] 1 no no no 2 yes yes yes [>] 500 sequences in the data set [>] min/max sequence length: 4/4 [>] found missing values ('NA') in sequence data [>] preparing 500 sequences [>] coding void elements with '%' and missing values with 'NA' [>] 2 distinct states appear in the data: 1 = no 2 = yes [>] state coding: [alphabet] [label] [long label] 1 no no no 2 yes yes yes [>] 500 sequences in the data set [>] min/max sequence length: 4/4 iteration : 1 / 1 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Imputation of the terminal gaps..." [>] found missing values ('NA') in sequence data [>] preparing 500 sequences [>] coding void elements with '%' and missing values with '*' [>] 2 distinct states appear in the data: 1 = no 2 = yes [>] state coding: [alphabet] [label] [long label] 1 no no no 2 yes yes yes [>] 500 sequences in the data set [>] min/max sequence length: 4/4 [>] found missing values ('NA') in sequence data [>] preparing 500 sequences [>] coding void elements with '%' and missing values with '*' [>] 2 distinct states appear in the data: 1 = no 2 = yes [>] state coding: [alphabet] [label] [long label] 1 no no no 2 yes yes yes [>] 500 sequences in the data set [>] min/max sequence length: 4/4 [>] found missing values ('NA') in sequence data [>] preparing 500 sequences [>] coding void elements with '%' and missing values with '*' [>] 2 distinct states appear in the data: 1 = no 2 = yes [>] state coding: [alphabet] [label] [long label] 1 no no no 2 yes yes yes [>] 500 sequences in the data set [>] min/max sequence length: 1/4 [>] found missing values ('NA') in sequence data [>] preparing 500 sequences [>] coding void elements with '%' and missing values with '*' [>] 2 distinct states appear in the data: 1 = no 2 = yes [>] state coding: [alphabet] [label] [long label] 1 no no no 2 yes yes yes [>] 500 sequences in the data set [>] min/max sequence length: 4/4 [>] found missing values ('NA') in sequence data [>] preparing 500 sequences [>] coding void elements with '%' and missing values with '*' [>] 2 distinct states appear in the data: 1 = no 2 = yes [>] state coding: [alphabet] [label] [long label] 1 no no no 2 yes yes yes [>] 500 sequences in the data set [>] min/max sequence length: 4/4 [>] found missing values ('NA') in sequence data [>] preparing 500 sequences [>] coding void elements with '%' and missing values with '*' [>] 2 distinct states appear in the data: 1 = no 2 = yes [>] state coding: [alphabet] [label] [long label] 1 no no no 2 yes yes yes [>] 500 sequences in the data set [>] min/max sequence length: 1/4 [>] found missing values ('NA') in sequence data [>] preparing 500 sequences [>] coding void elements with '%' and missing values with '*' [>] 2 distinct states appear in the data: 1 = no 2 = yes [>] state coding: [alphabet] [label] [long label] 1 no no no 2 yes yes yes [>] 500 sequences in the data set [>] min/max sequence length: 4/4 [>] found missing values ('NA') in sequence data [>] preparing 500 sequences [>] coding void elements with '%' and missing values with '*' [>] 2 distinct states appear in the data: 1 = no 2 = yes [>] state coding: [alphabet] [label] [long label] 1 no no no 2 yes yes yes [>] 500 sequences in the data set [>] min/max sequence length: 1/4 [>] found missing values ('NA') in sequence data [>] preparing 500 sequences [>] coding void elements with '%' and missing values with '*' [>] 2 distinct states appear in the data: 1 = no 2 = yes [>] state coding: [alphabet] [label] [long label] 1 no no no 2 yes yes yes [>] 500 sequences in the data set [>] min/max sequence length: 4/4 iteration : 1 / 1 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Imputation of the terminal gaps..." iteration : 1 / 5 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Imputation of the terminal gaps..." iteration : 2 / 5 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Imputation of the terminal gaps..." iteration : 3 / 5 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Imputation of the terminal gaps..." iteration : 4 / 5 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Imputation of the terminal gaps..." iteration : 5 / 5 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Imputation of the terminal gaps..." iteration : 1 / 5 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Step 1/3" [1] "Step 2/3" [1] "Step 3/3" [1] "Imputation of the terminal gaps..." [1] "Step 1/3" [1] "Step 2/3" [1] "Step 3/3" iteration : 2 / 5 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Step 1/3" [1] "Step 2/3" [1] "Step 3/3" [1] "Imputation of the terminal gaps..." [1] "Step 1/3" [1] "Step 2/3" [1] "Step 3/3" iteration : 3 / 5 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Step 1/3" [1] "Step 2/3" [1] "Step 3/3" [1] "Imputation of the terminal gaps..." [1] "Step 1/3" [1] "Step 2/3" [1] "Step 3/3" iteration : 4 / 5 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Step 1/3" [1] "Step 2/3" [1] "Step 3/3" [1] "Imputation of the terminal gaps..." [1] "Step 1/3" [1] "Step 2/3" [1] "Step 3/3" iteration : 5 / 5 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Step 1/3" [1] "Step 2/3" [1] "Step 3/3" [1] "Imputation of the terminal gaps..." [1] "Step 1/3" [1] "Step 2/3" [1] "Step 3/3" iteration : 1 / 1 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Imputation of the terminal gaps..." iteration : 1 / 1 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Step 1/3" [1] "Step 2/3" [1] "Step 3/3" [1] "Imputation of the terminal gaps..." [1] "Step 1/3" [1] "Step 2/3" [1] "Step 3/3" iteration : 1 / 1 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Imputation of the terminal gaps..." iteration : 1 / 2 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Imputation of the terminal gaps..." iteration : 2 / 2 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Imputation of the terminal gaps..." iteration : 1 / 2 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Imputation of the terminal gaps..." iteration : 2 / 2 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Imputation of the terminal gaps..." iteration : 1 / 2 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Step 1/3" [1] "Step 2/3" [1] "Step 3/3" iteration : 2 / 2 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." [1] "Step 1/3" [1] "Step 2/3" [1] "Step 3/3" iteration : 1 / 2 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." iteration : 2 / 2 [1] "Imputation of the internal gaps..." [1] "Step 1/2" [1] "Step 2/2" [1] "Imputation of the initial gaps..." iteration : 1 / 1 [1] "Imputation of the initial gaps..." [1] "Step 1/5" [1] "Step 2/5" [1] "Step 3/5" [1] "Step 4/5" [1] "Step 5/5" [1] "Imputation of the terminal gaps..." [1] "Step 1/1" iteration : 1 / 1 [1] "Imputation of the internal gaps..." [1] "Step 1/3" [1] "Step 2/3" [1] "Step 3/3" iteration : 1 / 1 [1] "Imputation of the internal gaps..." [1] "Step 1/3" [1] "Step 2/3" [1] "Step 3/3" [ FAIL 0 | WARN 0 | SKIP 323 | PASS 7 ] ══ Skipped tests (323) ═════════════════════════════════════════════════════════ • On CRAN (323): 'test-manipulation_seqimp.R:6:3', 'test-manipulation_seqimp.R:11:3', 'test-manipulation_seqimp.R:16:3', 'test-manipulation_seqimp.R:23:3', 'test-manipulation_seqimp.R:28:3', 'test-manipulation_seqimp.R:33:3', 'test-manipulation_seqimp.R:39:3', 'test-manipulation_seqimp.R:44:3', 'test-manipulation_seqimp.R:49:3', 'test-manipulation_seqimp.R:56:3', 'test-manipulation_seqimp.R:61:3', 'test-manipulation_seqimp.R:66:3', 'test-manipulation_seqimp.R:72:3', 'test-manipulation_seqimp.R:77:3', 'test-manipulation_seqimp.R:82:3', 'test-manipulation_seqimp.R:88:3', 'test-manipulation_seqimp.R:95:3', 'test-manipulation_seqimp.R:100:3', 'test-manipulation_seqimp.R:105:3', 'test-manipulation_seqimp.R:110:3', 'test-manipulation_seqimp.R:119:3', 'test-manipulation_seqimp.R:124:3', 'test-manipulation_seqimp.R:129:3', 'test-manipulation_seqimp.R:134:3', 'test-manipulation_seqimp.R:142:3', 'test-manipulation_seqimp.R:147:3', 'test-manipulation_seqimp.R:152:3', 'test-manipulation_seqimp.R:159:3', 'test-manipulation_seqimp.R:164:3', 'test-manipulation_seqimp.R:169:3', 'test-manipulation_seqimp.R:175:3', 'test-manipulation_seqimp.R:183:3', 'test-manipulation_seqimp.R:189:3', 'test-manipulation_seqimp.R:196:3', 'test-manipulation_seqimp.R:203:3', 'test-manipulation_seqimp.R:210:3', 'test-manipulation_seqimp.R:217:3', 'test-manipulation_seqimp.R:224:3', 'test-manipulation_seqimp.R:231:3', 'test-missings_generation.R:6:3', 'test-missings_generation.R:12:3', 'test-missings_generation.R:18:3', 'test-missings_generation.R:23:3', 'test-missings_generation.R:29:3', 'test-plots.R:6:3', 'test-plots.R:14:3', 'test-plots.R:20:3', 'test-plots.R:26:3', 'test-plots.R:33:3', 'test-plots.R:41:3', 'test-plots.R:46:3', 'test-plots.R:51:3', 'test-plots.R:57:3', 'test-plots.R:64:3', 'test-plots.R:73:3', 'test-plots.R:79:3', 'test-plots.R:85:3', 'test-plots.R:92:3', 'test-plots.R:99:3', 'test-plots.R:104:3', 'test-plots.R:109:3', 'test-plots.R:115:3', 'test-plots.R:120:3', 'test-plots.R:127:3', 'test-plots.R:132:3', 'test-plots.R:139:3', 'test-seqQuickLook.R:6:3', 'test-seqQuickLook.R:12:3', 'test-seqQuickLook.R:21:3', 'test-seqQuickLook.R:28:3', 'test-seqQuickLook.R:34:3', 'test-seqQuickLook.R:40:3', 'test-seqQuickLook.R:51:3', 'test-seqQuickLook.R:57:3', 'test-seqQuickLook.R:72:3', 'test-seqQuickLook.R:78:3', 'test-seqQuickLook.R:91:3', 'test-seqQuickLook.R:97:3', 'test-seqQuickLook.R:107:3', 'test-seqQuickLook.R:117:3', 'test-seqQuickLook.R:124:3', 'test-seqQuickLook.R:129:3', 'test-seqQuickLook.R:134:3', 'test-seqTrans.R:5:3', 'test-seqTrans.R:16:3', 'test-seqTrans.R:28:3', 'test-seqTrans.R:34:3', 'test-seqTrans.R:40:3', 'test-seqTrans.R:46:3', 'test-seqTrans.R:57:3', 'test-seqTrans.R:64:3', 'test-seqimpute.R:26:3', 'test-seqimpute.R:31:3', 'test-seqimpute.R:36:3', 'test-seqimpute.R:41:3', 'test-seqimpute.R:47:3', 'test-seqimpute.R:52:3', 'test-seqimpute.R:57:3', 'test-seqimpute.R:62:3', 'test-seqimpute.R:68:3', 'test-seqimpute.R:73:3', 'test-seqimpute.R:79:3', 'test-seqimpute.R:84:3', 'test-seqimpute.R:89:3', 'test-seqimpute.R:94:3', 'test-seqimpute.R:100:3', 'test-seqimpute.R:105:3', 'test-seqimpute.R:110:3', 'test-seqimpute.R:115:3', 'test-seqimpute.R:121:3', 'test-seqimpute.R:127:3', 'test-seqimpute.R:132:3', 'test-seqimpute.R:138:3', 'test-seqimpute.R:144:3', 'test-seqimpute.R:150:3', 'test-seqimpute.R:158:3', 'test-seqimpute.R:163:3', 'test-seqimpute.R:170:3', 'test-seqimpute.R:178:3', 'test-seqimpute.R:196:3', 'test-seqimpute.R:201:3', 'test-seqimpute.R:207:3', 'test-seqimpute.R:212:3', 'test-seqimpute.R:226:3', 'test-seqimpute.R:233:3', 'test-seqimpute.R:243:3', 'test-seqimpute.R:248:3', 'test-seqimpute.R:254:3', 'test-seqimpute.R:259:3', 'test-seqimpute.R:265:3', 'test-seqimpute.R:270:3', 'test-seqimpute.R:277:3', 'test-seqimpute.R:282:3', 'test-seqimpute.R:288:3', 'test-seqimpute.R:293:3', 'test-seqimpute.R:299:3', 'test-seqimpute.R:304:3', 'test-seqimpute.R:309:3', 'test-seqimpute.R:314:3', 'test-seqimpute.R:323:3', 'test-seqimpute.R:329:3', 'test-seqimpute.R:334:3', 'test-seqimpute.R:339:3', 'test-seqimpute.R:347:3', 'test-seqimpute.R:358:3', 'test-seqimpute.R:364:3', 'test-seqimpute.R:369:3', 'test-seqimpute.R:374:3', 'test-seqimpute.R:382:3', 'test-seqimpute.R:393:3', 'test-seqimpute.R:398:3', 'test-seqimpute.R:403:3', 'test-seqimpute.R:408:3', 'test-seqimpute.R:413:3', 'test-seqimpute.R:418:3', 'test-seqimpute.R:423:3', 'test-seqimpute.R:433:3', 'test-seqimpute.R:438:3', 'test-seqimpute.R:447:3', 'test-seqimpute.R:452:3', 'test-seqimpute.R:458:3', 'test-seqimpute.R:463:3', 'test-seqimpute.R:468:3', 'test-seqimpute.R:475:3', 'test-seqimpute.R:480:3', 'test-seqimpute.R:485:3', 'test-seqimpute.R:491:3', 'test-seqimpute.R:496:3', 'test-seqimpute.R:501:3', 'test-seqimpute.R:509:3', 'test-seqimpute.R:514:3', 'test-seqimpute.R:520:3', 'test-seqimpute.R:525:3', 'test-seqimpute.R:533:3', 'test-seqimpute.R:538:3', 'test-seqimpute.R:545:3', 'test-seqimpute.R:550:3', 'test-seqimpute.R:558:3', 'test-seqimpute.R:563:3', 'test-seqimpute.R:568:3', 'test-seqimpute.R:573:3', 'test-seqimpute.R:579:3', 'test-seqimpute.R:584:3', 'test-seqimpute.R:590:3', 'test-seqimpute.R:595:3', 'test-seqimpute.R:603:3', 'test-seqimpute.R:611:3', 'test-seqimpute.R:616:3', 'test-seqimpute.R:624:3', 'test-seqimpute.R:632:3', 'test-seqimpute.R:637:3', 'test-seqimpute.R:646:3', 'test-seqimpute.R:654:3', 'test-seqimpute.R:659:3', 'test-seqimpute.R:667:3', 'test-seqimpute.R:675:3', 'test-seqimpute.R:680:3', 'test-seqimpute.R:689:3', 'test-seqimpute.R:697:3', 'test-seqimpute.R:702:3', 'test-seqimpute.R:710:3', 'test-seqimpute.R:718:3', 'test-seqimpute.R:723:3', 'test-seqimpute.R:739:3', 'test-seqimpute.R:747:3', 'test-seqimpute.R:752:3', 'test-seqimpute.R:760:3', 'test-seqimpute.R:768:3', 'test-seqimpute.R:773:3', 'test-seqimpute.R:782:3', 'test-seqimpute.R:790:3', 'test-seqimpute.R:795:3', 'test-seqimpute.R:803:3', 'test-seqimpute.R:811:3', 'test-seqimpute.R:816:3', 'test-seqimpute.R:825:3', 'test-seqimpute.R:833:3', 'test-seqimpute.R:838:3', 'test-seqimpute.R:846:3', 'test-seqimpute.R:854:3', 'test-seqimpute.R:859:3', 'test-seqimpute.R:872:3', 'test-seqimpute.R:877:3', 'test-seqimpute.R:885:3', 'test-seqimpute.R:890:3', 'test-seqimpute.R:898:3', 'test-seqimpute.R:903:3', 'test-seqimpute.R:911:3', 'test-seqimpute.R:916:3', 'test-seqimpute.R:925:3', 'test-seqimpute.R:930:3', 'test-seqimpute.R:940:3', 'test-seqimpute.R:945:3', 'test-seqimpute.R:953:3', 'test-seqimpute.R:958:3', 'test-seqimpute.R:966:3', 'test-seqimpute.R:971:3', 'test-seqimpute.R:979:3', 'test-seqimpute.R:984:3', 'test-seqimpute.R:993:3', 'test-seqimpute.R:998:3', 'test-seqimpute.R:1008:3', 'test-seqimpute.R:1013:3', 'test-seqimpute.R:1021:3', 'test-seqimpute.R:1026:3', 'test-seqimpute.R:1034:3', 'test-seqimpute.R:1039:3', 'test-seqimpute.R:1047:3', 'test-seqimpute.R:1052:3', 'test-seqimpute.R:1061:3', 'test-seqimpute.R:1066:3', 'test-seqimpute.R:1075:3', 'test-seqimpute.R:1080:3', 'test-seqimpute.R:1088:3', 'test-seqimpute.R:1093:3', 'test-seqimpute.R:1101:3', 'test-seqimpute.R:1106:3', 'test-seqimpute.R:1114:3', 'test-seqimpute.R:1119:3', 'test-seqimpute.R:1128:3', 'test-seqimpute.R:1133:3', 'test-seqimpute.R:1143:3', 'test-seqimpute.R:1148:3', 'test-seqimpute.R:1153:3', 'test-seqimpute.R:1158:3', 'test-seqimpute.R:1164:3', 'test-seqimpute.R:1169:3', 'test-seqimpute.R:1175:3', 'test-seqimpute.R:1180:3', 'test-seqimpute.R:1191:3', 'test-seqimpute.R:1196:3', 'test-seqimpute.R:1201:3', 'test-seqimpute.R:1206:3', 'test-seqimpute.R:1212:3', 'test-seqimpute.R:1217:3', 'test-seqimpute.R:1223:3', 'test-seqimpute.R:1228:3', 'test-seqimpute.R:1235:3', 'test-seqimpute.R:1240:3', 'test-seqimpute.R:1247:3', 'test-seqimpute.R:1252:3', 'test-seqimpute.R:1257:3', 'test-seqimpute.R:1262:3', 'test-seqimpute.R:1267:3', 'test-seqimpute.R:1273:3', 'test-seqimpute.R:1279:3', 'test-seqimpute.R:1290:3', 'test-seqimpute.R:1295:3', 'test-seqimpute.R:1302:3', 'test-seqimpute.R:1307:3', 'test-seqimpute.R:1313:3', 'test-seqimpute.R:1322:3', 'test-seqimpute.R:1327:3', 'test-seqimpute.R:1332:3', 'test-seqimpute.R:1337:3', 'test-seqimpute.R:1342:3', 'test-seqimpute.R:1347:3', 'test-seqimpute.R:1352:3', 'test-seqimpute.R:1357:3', 'test-seqimpute.R:1366:3', 'test-seqimpute.R:1371:3', 'test-seqimpute.R:1380:3', 'test-seqimpute.R:1385:3', 'test-seqimpute.R:1394:3', 'test-seqimpute.R:1399:3', 'test-seqimpute.R:1404:3', 'test-seqimpute.R:1409:3', 'test-seqimpute.R:1414:3', 'test-seqimpute.R:1419:3', 'test-seqimpute.R:1425:3', 'test-seqimpute.R:1430:3', 'test-seqimpute.R:1437:3', 'test-seqimpute.R:1442:3', 'test-seqimpute.R:1447:3', 'test-seqimpute.R:1454:3', 'test-seqimpute.R:1459:3', 'test-seqimpute.R:1466:3', 'test-seqimpute.R:1471:3', 'test-seqimpute.R:1476:3', 'test-seqimpute.R:1483:3', 'test-seqimpute.R:1490:3', 'test-seqimpute.R:1497:3', 'test-seqimpute.R:1504:3' [ FAIL 0 | WARN 0 | SKIP 323 | PASS 7 ] > > proc.time() user system elapsed 16.54 1.09 17.62