* using log directory ‘/srv/hornik/tmp/CRAN_pretest/semEff.Rcheck’
* using R Under development (unstable) (2024-09-10 r87115)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (9)
    Debian flang-new version 18.1.8 (9)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘semEff/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘semEff’ version ‘0.7.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [7s/14s] NOTE
Maintainer: ‘Mark V. Murphy <murphymv@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://doi.org/10/bqd43d (moved to https://doi.org/10.1890/08-1034.1)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://doi.org/10/cqm32d (moved to https://doi.org/10.1207/S15328007SEM0702_4)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://doi.org/10/f8s8rb (moved to https://doi.org/10.1111/2041-210X.12512)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://doi.org/bqd43d (moved to https://doi.org/10.1890/08-1034.1)
    From: inst/doc/predicting-effects.html
    Status: 301
    Message: Moved Permanently
  URL: https://doi.org/d8gvwm (moved to https://doi.org/10.1890/1051-0761(2006)016%5B0503:ASEMAO%5D2.0.CO;2)
    From: inst/doc/semEff.html
    Status: 301
    Message: Moved Permanently
  URL: https://doi.org/f8s8rb (moved to https://doi.org/10.1111/2041-210X.12512)
    From: inst/doc/semEff.html
    Status: 301
    Message: Moved Permanently
  URL: https://www.buymeacoffee.com/murphymv (moved to https://buymeacoffee.com/murphymv)
    From: DESCRIPTION
          man/semEff-package.Rd
          README.md
    Status: 301
    Message: Moved Permanently
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘semEff’ can be installed ... [7s/7s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s/8s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  R2.Rd: predict.merMod, hatvalues.merMod
  bootCI.Rd: boot.ci
  bootEff.Rd: bootMer, boot
  predEff.Rd: predict.merMod, boot.ci
  semEff.Rd: boot.ci
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [12s/12s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [15s/15s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs