test_that("`derive_seq()` works as expected", { # Test for VSSEQ derivation vs <- read_domain_example("vs") rec_vars <- c("STUDYID", "USUBJID", "VSTESTCD", "VSDTC", "VSTPTNUM") observed_vsseq <- derive_seq(tgt_dat = vs, tgt_var = "VSSEQ", rec_vars = rec_vars) # nolint start expected_vsseq <- tibble::tribble( ~STUDYID, ~DOMAIN, ~USUBJID, ~VSSPID, ~VSTESTCD, ~VSDTC, ~VSTPTNUM, ~VSSEQ, "ABC123", "VS", "ABC123-375", "/F:VTLS1-D:9795532-R:2", "DIABP", "2020-09-01T13:31", NA, 1L, "ABC123", "VS", "ABC123-375", "/F:VTLS2-D:9795533-R:2", "DIABP", "2020-09-28T11:00", 2, 2L, "ABC123", "VS", "ABC123-375", "/F:VTLS1-D:9795532-R:2", "TEMP", "2020-09-01T13:31", NA, 3L, "ABC123", "VS", "ABC123-375", "/F:VTLS2-D:9795533-R:2", "TEMP", "2020-09-28T11:00", 2, 4L, "ABC123", "VS", "ABC123-376", "/F:VTLS1-D:9795591-R:1", "DIABP", "2020-09-20", NA, 1L, "ABC123", "VS", "ABC123-376", "/F:VTLS1-D:9795591-R:1", "TEMP", "2020-09-20", NA, 2L ) # nolint end expect_identical(observed_vsseq, expected_vsseq) # Test for APSEQ derivation apsc <- read_domain_example("apsc") observed_apseq <- derive_seq( tgt_dat = apsc, tgt_var = "APSEQ", rec_vars = c("STUDYID", "RSUBJID", "SCTESTCD"), sbj_vars = c("STUDYID", "RSUBJID") ) expected_apseq <- tibble::tribble( ~STUDYID, ~RSUBJID, ~SCTESTCD, ~DOMAIN, ~SREL, ~SCCAT, ~APSEQ, "ABC123", "ABC123-210", "EDULEVEL", "APSC", "FRIEND", "CAREGIVERSTUDY", 1L, "ABC123", "ABC123-210", "LVSBJIND", "APSC", "FRIEND", "CAREGIVERSTUDY", 2L, "ABC123", "ABC123-210", "TMSPPT", "APSC", "FRIEND", "CAREGIVERSTUDY", 3L, "ABC123", "ABC123-211", "CAREDUR", "APSC", "SIBLING", "CAREGIVERSTUDY", 1L, "ABC123", "ABC123-211", "LVSBJIND", "APSC", "SIBLING", "CAREGIVERSTUDY", 2L, "ABC123", "ABC123-212", "JOBCLAS", "APSC", "SPOUSE", "CAREGIVERSTUDY", 1L ) expect_identical(observed_apseq, expected_apseq) }) test_that("`is_seq_name()`: basic usage", { expect_true(is_seq_name("AESEQ")) expect_false(is_seq_name("AEseq")) expect_false(is_seq_name("AESEQUENCE")) })