test_that("simulate() and dharma_residuals() work", { skip_on_cran() mesh <- make_mesh(pcod, c("X", "Y"), cutoff = 15) fit <- sdmTMB(density ~ 1, data = pcod, mesh = mesh, family = tweedie() ) s <- simulate(fit, nsim = 100) expect_equal(ncol(s), 100) expect_equal(nrow(s), nrow(pcod)) expect_warning(dharma_residuals(s, fit), regexp = "mle") fit <- sdmTMB(density ~ 1, data = pcod, mesh = mesh, family = delta_gamma() ) s <- simulate(fit, nsim = 100, type = 'mle-mvn') expect_equal(ncol(s), 100) expect_equal(nrow(s), nrow(pcod)) dharma_residuals(s, fit) fit <- sdmTMB(density ~ 1, data = pcod, mesh = mesh, spatial = "off", family = delta_gamma(type = "poisson-link") ) s <- simulate(fit, nsim = 100, type = "mle-mvn") expect_equal(ncol(s), 100) expect_equal(nrow(s), nrow(pcod)) dharma_residuals(s, fit) dharma_residuals(s, fit, plot = FALSE) s <- simulate(fit, nsim = 100, params = "mle-mvn") expect_equal(ncol(s), 100) s <- simulate(fit, nsim = 100, params = "mle-mvn", re_form = NA) expect_equal(ncol(s), 100) # s <- simulate(fit, nsim = 100, type = 'mle-mvn') # dharma_residuals(s, fit, expected_distribution = "normal") # x <- dharma_residuals(s, fit, return_DHARMa = TRUE) # expect_s3_class(x, "DHARMa") })