test_that("coef and vcov and confint work", { skip_on_ci() skip_on_cran() fit <- sdmTMB( density ~ depth, data = pcod_2011, spatial = "off", family = tweedie(link = "log") ) x <- coef(fit) expect_equal(round(unname(x), 3), c(5.347, -0.010)) expect_equal(names(x), c("(Intercept)", "depth")) x <- vcov(fit) expect_equal(nrow(x), 2L) expect_equal(ncol(x), 2L) expect_equal(colnames(x)[1], "(Intercept)") expect_equal(rownames(x)[1], "(Intercept)") x <- vcov(fit, complete = TRUE) expect_equal(nrow(x), 4L) expect_equal(ncol(x), 4L) x <- confint(fit) expect_equal(nrow(x), 2L) expect_equal(ncol(x), 3L) expect_true(grepl("2\\.5", colnames(x))[1]) expect_true(grepl("97\\.5", colnames(x))[2]) expect_true(grepl("Estimate", colnames(x))[3]) }) test_that("various methods work", { skip_on_ci() skip_on_cran() fit <- sdmTMB( density ~ depth, data = pcod_2011, spatial = "off", family = tweedie(link = "log") ) f <- fitted(fit) expect_equal(nrow(pcod_2011), length(f)) fit <- sdmTMB( density ~ depth, data = pcod_2011, spatial = "off", family = delta_gamma() ) f <- fitted(fit) expect_equal(nrow(pcod_2011), length(f)) a <- AIC(fit) expect_equal(round(a, 3), 6062.726) f <- fixef(fit) expect_length(f, 2L) f <- family(fit) expect_identical(f$family, c("binomial", "Gamma")) x <- terms(fit) expect_identical(as.character(x), c("~", "density", "depth")) pcod_2011$fyear <- as.factor(pcod_2011$year) fit <- sdmTMB( density ~ (1 | fyear), data = pcod_2011, spatial = "off", family = tweedie(link = "log") ) x <- ranef(fit) expect_length(x$cond$fyear[,1], 4L) })