installing dependencies ‘cli’, ‘ggplot2’, ‘glmGamPoi’, ‘hdf5r’, ‘igraph’, ‘knitr’, ‘prettyunits’, ‘Rcpp’, ‘RcppEigen’, ‘reshape’, ‘rlang’, ‘rmarkdown’, ‘Seurat’, ‘testthat’ also installing the dependencies ‘sys’, ‘bitops’, ‘colorspace’, ‘utf8’, ‘dotCall64’, ‘stringi’, ‘askpass’, ‘tidyselect’, ‘gtools’, ‘caTools’, ‘tensor’, ‘BH’, ‘sitmo’, ‘zlibbioc’, ‘UCSC.utils’, ‘GenomeInfoDbData’, ‘farver’, ‘labeling’, ‘munsell’, ‘viridisLite’, ‘fansi’, ‘pillar’, ‘base64enc’, ‘cachem’, ‘fastmap’, ‘memoise’, ‘mime’, ‘sass’, ‘fs’, ‘pkgbuild’, ‘rprojroot’, ‘diffobj’, ‘sp’, ‘spam’, ‘data.table’, ‘stringr’, ‘globals’, ‘listenv’, ‘parallelly’, ‘curl’, ‘openssl’, ‘zoo’, ‘htmlwidgets’, ‘tidyr’, ‘dplyr’, ‘lazyeval’, ‘crosstalk’, ‘promises’, ‘RcppTOML’, ‘here’, ‘rappdirs’, ‘gplots’, ‘reshape2’, ‘gridExtra’, ‘httpuv’, ‘xtable’, ‘sourcetools’, ‘later’, ‘crayon’, ‘commonmark’, ‘spatstat.data’, ‘spatstat.univar’, ‘spatstat.random’, ‘spatstat.utils’, ‘spatstat.sparse’, ‘goftest’, ‘abind’, ‘deldir’, ‘polyclip’, ‘FNN’, ‘dqrng’, ‘sparseMatrixStats’, ‘S4Vectors’, ‘IRanges’, ‘S4Arrays’, ‘XVector’, ‘rhdf5’, ‘rhdf5filters’, ‘Rhdf5lib’, ‘GenomicRanges’, ‘Biobase’, ‘GenomeInfoDb’, ‘assorthead’, ‘bit’, ‘plyr’, ‘lifecycle’, ‘magrittr’, ‘pkgconfig’, ‘vctrs’, ‘cpp11’, ‘glue’, ‘gtable’, ‘isoband’, ‘scales’, ‘tibble’, ‘withr’, ‘evaluate’, ‘highr’, ‘xfun’, ‘yaml’, ‘bslib’, ‘fontawesome’, ‘htmltools’, ‘jquerylib’, ‘jsonlite’, ‘tinytex’, ‘brio’, ‘callr’, ‘desc’, ‘digest’, ‘pkgload’, ‘praise’, ‘processx’, ‘ps’, ‘R6’, ‘waldo’, ‘SeuratObject’, ‘cowplot’, ‘fastDummies’, ‘fitdistrplus’, ‘future’, ‘future.apply’, ‘generics’, ‘ggrepel’, ‘ggridges’, ‘httr’, ‘ica’, ‘irlba’, ‘leiden’, ‘lmtest’, ‘matrixStats’, ‘miniUI’, ‘patchwork’, ‘pbapply’, ‘plotly’, ‘png’, ‘progressr’, ‘purrr’, ‘RANN’, ‘RColorBrewer’, ‘RcppAnnoy’, ‘RcppHNSW’, ‘reticulate’, ‘ROCR’, ‘RSpectra’, ‘Rtsne’, ‘scattermore’, ‘sctransform’, ‘shiny’, ‘spatstat.explore’, ‘spatstat.geom’, ‘uwot’, ‘RcppProgress’, ‘DelayedMatrixStats’, ‘MatrixGenerics’, ‘SparseArray’, ‘DelayedArray’, ‘HDF5Array’, ‘SummarizedExperiment’, ‘SingleCellExperiment’, ‘BiocGenerics’, ‘RcppArmadillo’, ‘beachmat’, ‘bit64’ begin installing package ‘sys’ begin installing package ‘bitops’ begin installing package ‘colorspace’ begin installing package ‘dotCall64’ begin installing package ‘utf8’ begin installing package ‘stringi’ begin installing package ‘gtools’ begin installing package ‘tensor’ begin installing package ‘BH’ begin installing package ‘zlibbioc’ begin installing package ‘GenomeInfoDbData’ begin installing package ‘farver’ begin installing package ‘labeling’ begin installing package ‘viridisLite’ begin installing package ‘fansi’ begin installing package ‘base64enc’ begin installing package ‘fastmap’ begin installing package ‘mime’ begin installing package ‘fs’ begin installing package ‘rprojroot’ begin installing package ‘data.table’ begin installing package ‘sp’ begin installing package ‘globals’ begin installing package ‘listenv’ begin installing package ‘parallelly’ begin installing package ‘curl’ begin installing package ‘zoo’ begin installing package ‘lazyeval’ * installing *source* package ‘tensor’ ... ** package ‘tensor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tensor) begin installing package ‘rappdirs’ * installing *source* package ‘viridisLite’ ... ** package ‘viridisLite’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (viridisLite) begin installing package ‘xtable’ * installing *source* package ‘zlibbioc’ ... ** package ‘zlibbioc’ successfully unpacked and MD5 sums checked ** using staged installation configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCqQAl4/R.INSTALL46f8c7cb51e77/zlibbioc/src' mkdir -p "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-zlibbioc/00new/zlibbioc/include" clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_zlibbioc.c -o R_init_zlibbioc.o R_init_zlibbioc.c:1:20: warning: ISO C requires a translation unit to contain at least one declaration [-Wempty-translation-unit] 1 | /* do not remove */ | ^ 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o zlibbioc.so R_init_zlibbioc.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCqQAl4/R.INSTALL46f8c7cb51e77/zlibbioc/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-zlibbioc/00new/zlibbioc/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in fun(libname, pkgname) : Package 'zlibbioc' is deprecated and will be removed from Bioconductor version 3.22 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning in fun(libname, pkgname) : Package 'zlibbioc' is deprecated and will be removed from Bioconductor version 3.22 ** testing if installed package keeps a record of temporary installation path * DONE (zlibbioc) begin installing package ‘sourcetools’ * installing *source* package ‘bitops’ ... ** package ‘bitops’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJfn4JO/R.INSTALL46f8d28ba45c3/bitops/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bit-ops.c -o bit-ops.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cksum.c -o cksum.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o bitops.so bit-ops.o cksum.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJfn4JO/R.INSTALL46f8d28ba45c3/bitops/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-bitops/00new/bitops/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bitops) begin installing package ‘crayon’ * installing *source* package ‘mime’ ... ** package ‘mime’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpY8BFLP/R.INSTALL46f757c31b3df/mime/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rawmatch.c -o rawmatch.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o mime.so init.o rawmatch.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpY8BFLP/R.INSTALL46f757c31b3df/mime/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-mime/00new/mime/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mime) begin installing package ‘commonmark’ * installing *source* package ‘sys’ ... ** package ‘sys’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUK1HmI/R.INSTALL46f8b61cf7883/sys/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c exec.c -o exec.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o sys.so exec.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUK1HmI/R.INSTALL46f8b61cf7883/sys/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-sys/00new/sys/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sys) begin installing package ‘spatstat.utils’ * installing *source* package ‘base64enc’ ... ** package ‘base64enc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuIVm1I/R.INSTALL46f961d2c2a05/base64enc/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c uriencode.c -o uriencode.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utf8.c -o utf8.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o base64enc.so base64.o uriencode.o utf8.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuIVm1I/R.INSTALL46f961d2c2a05/base64enc/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-base64enc/00new/base64enc/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (base64enc) begin installing package ‘goftest’ * installing *source* package ‘labeling’ ... ** package ‘labeling’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (labeling) begin installing package ‘abind’ * installing *source* package ‘GenomeInfoDbData’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomeInfoDbData) begin installing package ‘deldir’ * installing *source* package ‘rprojroot’ ... ** package ‘rprojroot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rprojroot) begin installing package ‘polyclip’ * installing *source* package ‘lazyeval’ ... ** package ‘lazyeval’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQ7c8r7/R.INSTALL46f95263d3c20/lazyeval/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c expr.c -o expr.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c interp.c -o interp.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lazy.c -o lazy.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c name.c -o name.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQ7c8r7/R.INSTALL46f95263d3c20/lazyeval/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-lazyeval/00new/lazyeval/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lazyeval) begin installing package ‘FNN’ * installing *source* package ‘globals’ ... ** package ‘globals’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (globals) begin installing package ‘Rhdf5lib’ * installing *source* package ‘listenv’ ... ** package ‘listenv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (listenv) begin installing package ‘assorthead’ * installing *source* package ‘rappdirs’ ... ** package ‘rappdirs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFu9O32/R.INSTALL474905d59880/rappdirs/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c win-path.c -o win-path.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o rappdirs.so init.o win-path.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFu9O32/R.INSTALL474905d59880/rappdirs/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-rappdirs/00new/rappdirs/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rappdirs) begin installing package ‘bit’ * installing *source* package ‘gtools’ ... ** package ‘gtools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjQEcqg/R.INSTALL46f8965ce84da/gtools/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c roman2int.c -o roman2int.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c setTCPNoDelay.c -o setTCPNoDelay.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o gtools.so init.o roman2int.o setTCPNoDelay.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjQEcqg/R.INSTALL46f8965ce84da/gtools/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-gtools/00new/gtools/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gtools) begin installing package ‘magrittr’ * installing *source* package ‘fastmap’ ... ** package ‘fastmap’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpzwbhlo/R.INSTALL46f7b592c4d73/fastmap/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Ilib/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O3 -Wall -pedantic -c fastmap.cpp -o fastmap.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Ilib/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o fastmap.so fastmap.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpzwbhlo/R.INSTALL46f7b592c4d73/fastmap/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-fastmap/00new/fastmap/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastmap) begin installing package ‘pkgconfig’ * installing *source* package ‘curl’ ... ** package ‘curl’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 Using PKG_LIBS=-lcurl Found recent recent version of libcurl ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLAB1XS/R.INSTALL46f7374719e45/curl/src' rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o findport.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o options.o reflist.o split.o ssl.o typechecking.o urlparser.o utils.o version.o winidn.o writer.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c callbacks.c -o callbacks.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c curl.c -o curl.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c download.c -o download.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c escape.c -o escape.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c fetch.c -o fetch.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c findport.c -o findport.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c form.c -o form.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c getdate.c -o getdate.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c handle.c -o handle.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ieproxy.c -o ieproxy.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c interrupt.c -o interrupt.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c multi.c -o multi.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c nslookup.c -o nslookup.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c options.c -o options.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c reflist.c -o reflist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c split.c -o split.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ssl.c -o ssl.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c typechecking.c -o typechecking.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c urlparser.c -o urlparser.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c version.c -o version.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c winidn.c -o winidn.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c writer.c -o writer.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o curl.so callbacks.o curl.o download.o escape.o fetch.o findport.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o options.o reflist.o split.o ssl.o typechecking.o urlparser.o utils.o version.o winidn.o writer.o -lcurl -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLAB1XS/R.INSTALL46f7374719e45/curl/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-curl/00new/curl/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (curl) begin installing package ‘cpp11’ * installing *source* package ‘utf8’ ... ** package ‘utf8’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4G7DEQ/R.INSTALL46f676d460d5c/utf8/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c as_utf8.c -o as_utf8.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c bytes.c -o bytes.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c context.c -o context.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c render.c -o render.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c render_table.c -o render_table.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c string.c -o string.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c text.c -o text.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_encode.c -o utf8_encode.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_format.c -o utf8_format.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_normalize.c -o utf8_normalize.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_valid.c -o utf8_valid.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_width.c -o utf8_width.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c util.c -o util.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/array.c -o utf8lite/src/array.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/char.c -o utf8lite/src/char.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/encode.c -o utf8lite/src/encode.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/error.c -o utf8lite/src/error.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/escape.c -o utf8lite/src/escape.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/graph.c -o utf8lite/src/graph.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/render.c -o utf8lite/src/render.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/text.c -o utf8lite/src/text.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4G7DEQ/R.INSTALL46f676d460d5c/utf8/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-utf8/00new/utf8/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (utf8) begin installing package ‘glue’ * installing *source* package ‘goftest’ ... ** package ‘goftest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTklNhj/R.INSTALL477155238ac05/goftest/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ADinf.c -o ADinf.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c AnDarl.c -o AnDarl.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o goftest.so ADinf.o AnDarl.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTklNhj/R.INSTALL477155238ac05/goftest/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-goftest/00new/goftest/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (goftest) begin installing package ‘isoband’ * installing *source* package ‘abind’ ... ** package ‘abind’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (abind) begin installing package ‘withr’ * installing *source* package ‘xtable’ ... ** package ‘xtable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xtable) begin installing package ‘evaluate’ * installing *source* package ‘sourcetools’ ... ** package ‘sourcetools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5uJDQB/R.INSTALL4767920706612/sourcetools/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Reader.cpp -o Reader.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Tokenizer.cpp -o Tokenizer.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sourcetools-init.c -o sourcetools-init.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o sourcetools.so Reader.o Tokenizer.o sourcetools-init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5uJDQB/R.INSTALL4767920706612/sourcetools/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-sourcetools/00new/sourcetools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sourcetools) begin installing package ‘xfun’ * installing *source* package ‘crayon’ ... ** package ‘crayon’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crayon) begin installing package ‘yaml’ * installing *source* package ‘pkgconfig’ ... ** package ‘pkgconfig’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgconfig) begin installing package ‘jsonlite’ * installing *source* package ‘magrittr’ ... ** package ‘magrittr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmplbhn6s/R.INSTALL47c6823c4772f/magrittr/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pipe.c -o pipe.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o magrittr.so pipe.o utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmplbhn6s/R.INSTALL47c6823c4772f/magrittr/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-magrittr/00new/magrittr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (magrittr) begin installing package ‘brio’ * installing *source* package ‘dotCall64’ ... ** package ‘dotCall64’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using Fortran compiler: ‘Debian flang-new version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSjCQ4Q/R.INSTALL46f7d5e0b307a/dotCall64/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -DDOTCAL64_PRIVATE -fpic -g -O3 -Wall -pedantic -c dotCall64.c -o dotCall64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -DDOTCAL64_PRIVATE -fpic -g -O3 -Wall -pedantic -c dotCall64helpers.c -o dotCall64helpers.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -DDOTCAL64_PRIVATE -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -DDOTCAL64_PRIVATE -fpic -g -O3 -Wall -pedantic -c testfunctions_c.c -o testfunctions_c.o flang-new-18 -fpic -g -O2 -c testfunctions_f.f -o testfunctions_f.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o dotCall64.so dotCall64.o dotCall64helpers.o init.o testfunctions_c.o testfunctions_f.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSjCQ4Q/R.INSTALL46f7d5e0b307a/dotCall64/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-dotCall64/00new/dotCall64/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dotCall64) begin installing package ‘digest’ * installing *source* package ‘fansi’ ... ** package ‘fansi’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp61A36V/R.INSTALL46f8a6cacb23b/fansi/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c assumptions.c -o assumptions.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c carry.c -o carry.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c has.c -o has.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c nchar.c -o nchar.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c normalize.c -o normalize.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c read.c -o read.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rnchar.c -o rnchar.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c state.c -o state.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c strip.c -o strip.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c substr.c -o substr.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c tabs.c -o tabs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c tohtml.c -o tohtml.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c trimws.c -o trimws.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c unhandled.c -o unhandled.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utf8.c -o utf8.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c wrap.c -o wrap.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c write.c -o write.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o fansi.so assumptions.o carry.o has.o init.o nchar.o normalize.o read.o rnchar.o state.o strip.o substr.o tabs.o tohtml.o trimws.o unhandled.o utf8.o utils.o wrap.o write.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp61A36V/R.INSTALL46f8a6cacb23b/fansi/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-fansi/00new/fansi/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fansi) begin installing package ‘praise’ * installing *source* package ‘assorthead’ ... ** package ‘assorthead’ successfully unpacked and MD5 sums checked ** using staged installation ** inst ** help No man pages found in package ‘assorthead’ *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (assorthead) begin installing package ‘ps’ * installing *source* package ‘parallelly’ ... ** package ‘parallelly’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpo0rZCW/R.INSTALL46f8f777257b6/parallelly/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c 000.init.c -o 000.init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c calc-serialized-size.c -o calc-serialized-size.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test_tcp_port.c -o test_tcp_port.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o parallelly.so 000.init.o calc-serialized-size.o test_tcp_port.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpo0rZCW/R.INSTALL46f8f777257b6/parallelly/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-parallelly/00new/parallelly/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (parallelly) begin installing package ‘R6’ * installing *source* package ‘cpp11’ ... ** package ‘cpp11’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cpp11) begin installing package ‘generics’ * installing *source* package ‘praise’ ... ** package ‘praise’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (praise) begin installing package ‘ica’ * installing *source* package ‘glue’ ... ** package ‘glue’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKkQHjZ/R.INSTALL481d649b87bb2/glue/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c glue.c -o glue.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c trim.c -o trim.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o glue.so glue.o init.o trim.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKkQHjZ/R.INSTALL481d649b87bb2/glue/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-glue/00new/glue/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glue) begin installing package ‘irlba’ * installing *source* package ‘brio’ ... ** package ‘brio’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4fCvqz/R.INSTALL486a84cb2222a/brio/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c brio.c -o brio.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c file_line_endings.c -o file_line_endings.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c read_file.c -o read_file.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c read_file_raw.c -o read_file_raw.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c read_lines.c -o read_lines.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write_file.c -o write_file.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write_file_raw.c -o write_file_raw.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write_lines.c -o write_lines.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_file_raw.o write_lines.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4fCvqz/R.INSTALL486a84cb2222a/brio/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-brio/00new/brio/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brio) begin installing package ‘matrixStats’ * installing *source* package ‘evaluate’ ... ** package ‘evaluate’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (evaluate) begin installing package ‘pbapply’ * installing *source* package ‘withr’ ... ** package ‘withr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (withr) begin installing package ‘png’ * installing *source* package ‘deldir’ ... ** package ‘deldir’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using Fortran compiler: ‘Debian flang-new version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeN0ZIj/R.INSTALL477508364c10/deldir/src' flang-new-18 -fpic -g -O2 -c acchk.f90 -o acchk.o flang-new-18 -fpic -g -O2 -c addpt.f90 -o addpt.o flang-new-18 -fpic -g -O2 -c adjchk.f90 -o adjchk.o flang-new-18 -fpic -g -O2 -c binsrt.f90 -o binsrt.o flang-new-18 -fpic -g -O2 -c circen.f90 -o circen.o ./circen.f90:59:9: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes call intpr("Points are collinear but in the wrong order.",-1,ndi,0) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./circen.f90:56:9: previous reference to 'intpr' call intpr("Point numbers:",-1,indv,3) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ flang-new-18 -fpic -g -O2 -c cross.f90 -o cross.o flang-new-18 -fpic -g -O2 -c delet.f90 -o delet.o flang-new-18 -fpic -g -O2 -c delet1.f90 -o delet1.o flang-new-18 -fpic -g -O2 -c delout.f90 -o delout.o flang-new-18 -fpic -g -O2 -c delseg.f90 -o delseg.o flang-new-18 -fpic -g -O2 -c dirout.f90 -o dirout.o flang-new-18 -fpic -g -O2 -c dirseg.f90 -o dirseg.o flang-new-18 -fpic -g -O2 -c dldins.f90 -o dldins.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o flang-new-18 -fpic -g -O2 -c initad.f90 -o initad.o flang-new-18 -fpic -g -O2 -c insrt.f90 -o insrt.o flang-new-18 -fpic -g -O2 -c insrt1.f90 -o insrt1.o flang-new-18 -fpic -g -O2 -c intri.f90 -o intri.o flang-new-18 -fpic -g -O2 -c locn.f90 -o locn.o flang-new-18 -fpic -g -O2 -c master.f90 -o master.o flang-new-18 -fpic -g -O2 -c mnnd.f90 -o mnnd.o flang-new-18 -fpic -g -O2 -c pred.f90 -o pred.o flang-new-18 -fpic -g -O2 -c qtest.f90 -o qtest.o flang-new-18 -fpic -g -O2 -c qtest1.f90 -o qtest1.o ./qtest1.f90:76:9: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes call intpr("now, other vertex, nxt:",-1,indv,3) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./qtest1.f90:75:9: previous reference to 'intpr' call intpr("Point being added, h:",-1,itmp,1) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ flang-new-18 -fpic -g -O2 -c stoke.f90 -o stoke.o flang-new-18 -fpic -g -O2 -c succ.f90 -o succ.o flang-new-18 -fpic -g -O2 -c swap.f90 -o swap.o flang-new-18 -fpic -g -O2 -c testeq.f90 -o testeq.o flang-new-18 -fpic -g -O2 -c triar.f90 -o triar.o flang-new-18 -fpic -g -O2 -c trifnd.f90 -o trifnd.o ./trifnd.f90:46:9: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes call intpr("Previous triangle:",-1,tau,3) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ./trifnd.f90:16:5: previous reference to 'intpr' call intpr("No triangles to find.",-1,ndi,0) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o deldir.so acchk.o addpt.o adjchk.o binsrt.o circen.o cross.o delet.o delet1.o delout.o delseg.o dirout.o dirseg.o dldins.o init.o initad.o insrt.o insrt1.o intri.o locn.o master.o mnnd.o pred.o qtest.o qtest1.o stoke.o succ.o swap.o testeq.o triar.o trifnd.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeN0ZIj/R.INSTALL477508364c10/deldir/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-deldir/00new/deldir/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (deldir) begin installing package ‘RANN’ * installing *source* package ‘zoo’ ... ** package ‘zoo’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpP6R4Gc/R.INSTALL46f8855edb19c/zoo/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c coredata.c -o coredata.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lag.c -o lag.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o zoo.so coredata.o init.o lag.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpP6R4Gc/R.INSTALL46f8855edb19c/zoo/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-zoo/00new/zoo/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zoo) begin installing package ‘RColorBrewer’ * installing *source* package ‘R6’ ... ** package ‘R6’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R6) begin installing package ‘RcppProgress’ * installing *source* package ‘generics’ ... ** package ‘generics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (generics) begin installing package ‘BiocGenerics’ * installing *source* package ‘spatstat.utils’ ... ** package ‘spatstat.utils’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRP50gr/R.INSTALL476e813906c1d/spatstat.utils/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c circxseg.c -o circxseg.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c distseg.c -o distseg.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fastinterv.c -o fastinterv.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c inxyp.c -o inxyp.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c matchindices.c -o matchindices.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c matchpoints.c -o matchpoints.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ply.c -o ply.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c primefax.c -o primefax.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c revcum.c -o revcum.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o spatstat.utils.so circxseg.o distseg.o fastinterv.o init.o inxyp.o matchindices.o matchpoints.o ply.o primefax.o revcum.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRP50gr/R.INSTALL476e813906c1d/spatstat.utils/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-spatstat.utils/00new/spatstat.utils/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spatstat.utils) begin installing package ‘cli’ * installing *source* package ‘png’ ... ** package ‘png’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjseR2y/R.INSTALL4947120274c3a/png/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 `libpng-config --cflags` -fpic -g -O3 -Wall -pedantic -c dummy.c -o dummy.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 `libpng-config --cflags` -fpic -g -O3 -Wall -pedantic -c read.c -o read.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 `libpng-config --cflags` -fpic -g -O3 -Wall -pedantic -c write.c -o write.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o png.so dummy.o read.o write.o -lpng16 -lz -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjseR2y/R.INSTALL4947120274c3a/png/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-png/00new/png/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (png) begin installing package ‘prettyunits’ * installing *source* package ‘RcppProgress’ ... ** package ‘RcppProgress’ successfully unpacked and MD5 sums checked ** using staged installation ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppProgress) begin installing package ‘rlang’ * installing *source* package ‘RColorBrewer’ ... ** package ‘RColorBrewer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RColorBrewer) begin installing package ‘Rcpp’ * installing *source* package ‘ica’ ... ** package ‘ica’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ica) begin installing package ‘askpass’ * installing *source* package ‘pbapply’ ... ** package ‘pbapply’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pbapply) begin installing package ‘caTools’ * installing *source* package ‘commonmark’ ... ** package ‘commonmark’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKGnZgl/R.INSTALL476d6642ca228/commonmark/src' rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions/tasklist.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions.c -o extensions.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c wrapper.c -o wrapper.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/cmark.c -o cmark/cmark.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/node.c -o cmark/node.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/iterator.c -o cmark/iterator.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/blocks.c -o cmark/blocks.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/inlines.c -o cmark/inlines.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/scanners.c -o cmark/scanners.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/utf8.c -o cmark/utf8.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/buffer.c -o cmark/buffer.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/references.c -o cmark/references.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/render.c -o cmark/render.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/man.c -o cmark/man.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/xml.c -o cmark/xml.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/html.c -o cmark/html.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/commonmark.c -o cmark/commonmark.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/latex.c -o cmark/latex.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/arena.c -o cmark/arena.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/linked_list.c -o cmark/linked_list.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/plugin.c -o cmark/plugin.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/registry.c -o cmark/registry.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/syntax_extension.c -o cmark/syntax_extension.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/plaintext.c -o cmark/plaintext.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/footnotes.c -o cmark/footnotes.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/map.c -o cmark/map.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/autolink.c -o extensions/autolink.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/core-extensions.c -o extensions/core-extensions.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/ext_scanners.c -o extensions/ext_scanners.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/strikethrough.c -o extensions/strikethrough.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/table.c -o extensions/table.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/tagfilter.c -o extensions/tagfilter.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/tasklist.c -o extensions/tasklist.o ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions/tasklist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKGnZgl/R.INSTALL476d6642ca228/commonmark/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-commonmark/00new/commonmark/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (commonmark) begin installing package ‘diffobj’ * installing *source* package ‘jsonlite’ ... ** package ‘jsonlite’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmppIt3MN/R.INSTALL485e2ae4a0cf/jsonlite/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c collapse_array.c -o collapse_array.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c collapse_object.c -o collapse_object.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c collapse_pretty.c -o collapse_pretty.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c escape_chars.c -o escape_chars.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c integer64_to_na.c -o integer64_to_na.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c is_datelist.c -o is_datelist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c is_recordlist.c -o is_recordlist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c is_scalarlist.c -o is_scalarlist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c modp_numtoa.c -o modp_numtoa.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c null_to_na.c -o null_to_na.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c num_to_char.c -o num_to_char.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c parse.c -o parse.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c prettify.c -o prettify.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c push_parser.c -o push_parser.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c r-base64.c -o r-base64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c register.c -o register.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c row_collapse.c -o row_collapse.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c transpose_list.c -o transpose_list.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c validate.c -o validate.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl.c -o yajl/yajl.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_buf.c -o yajl/yajl_buf.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_encode.c -o yajl/yajl_encode.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_gen.c -o yajl/yajl_gen.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_lex.c -o yajl/yajl_lex.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_parser.c -o yajl/yajl_parser.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_tree.c -o yajl/yajl_tree.o ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmppIt3MN/R.INSTALL485e2ae4a0cf/jsonlite/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-jsonlite/00new/jsonlite/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘asJSON’ with signature ‘"AsIs"’: no definition for class “AsIs” in method for ‘asJSON’ with signature ‘"ITime"’: no definition for class “ITime” in method for ‘asJSON’ with signature ‘"hms"’: no definition for class “hms” in method for ‘asJSON’ with signature ‘"json"’: no definition for class “json” in method for ‘asJSON’ with signature ‘"integer64"’: no definition for class “integer64” in method for ‘asJSON’ with signature ‘"pairlist"’: no definition for class “pairlist” in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” in method for ‘asJSON’ with signature ‘"scalar"’: no definition for class “scalar” in method for ‘asJSON’ with signature ‘"sf"’: no definition for class “sf” in method for ‘asJSON’ with signature ‘"sfc"’: no definition for class “sfc” in method for ‘asJSON’ with signature ‘"vctrs_vctr"’: no definition for class “vctrs_vctr” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jsonlite) begin installing package ‘here’ * installing *source* package ‘isoband’ ... ** package ‘isoband’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDbU8gj/R.INSTALL481de54f708fa/isoband/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c clip-lines.cpp -o clip-lines.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c init.cpp -o init.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c isoband.cpp -o isoband.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c polygon.cpp -o polygon.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c separate-polygons.cpp -o separate-polygons.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c test-clip-lines.cpp -o test-clip-lines.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c test-runner.cpp -o test-runner.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c test-separate-polygons.cpp -o test-separate-polygons.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o isoband.so clip-lines.o init.o isoband.o polygon.o separate-polygons.o test-clip-lines.o test-runner.o test-separate-polygons.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDbU8gj/R.INSTALL481de54f708fa/isoband/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-isoband/00new/isoband/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (isoband) begin installing package ‘spatstat.data’ * installing *source* package ‘polyclip’ ... ** package ‘polyclip’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 accepts -g... yes Using PKG_CONFIG: pkgconf Compiling against bundled copy of clipper library. checking for int64_t... yes In the clipper library, signed 64-bit integers (cInt) will be declared as 'int64_t' checking for uint64_t... yes In the clipper library, unsigned 64-bit integers (cUInt) will be declared as 'uint64_t' configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDJFE9s/R.INSTALL4776761105608/polyclip/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPOLYCLIP_LONG64="int64_t" -DPOLYCLIP_ULONG64="uint64_t" -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPOLYCLIP_LONG64="int64_t" -DPOLYCLIP_ULONG64="uint64_t" -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c interface.cpp -o interface.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPOLYCLIP_LONG64="int64_t" -DPOLYCLIP_ULONG64="uint64_t" -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c clipper.cpp -o clipper.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o polyclip.so init.o interface.o clipper.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDJFE9s/R.INSTALL4776761105608/polyclip/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-polyclip/00new/polyclip/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (polyclip) begin installing package ‘spatstat.univar’ * installing *source* package ‘RANN’ ... ** package ‘RANN’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGg97NT/R.INSTALL494d91fc60b94/RANN/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -Ivendor/ann -DRANN -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c NN.cc -o NN.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -Ivendor/ann -DRANN -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ann2.cpp -o ann2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -Ivendor/ann -DRANN -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o RANN.so NN.o ann2.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGg97NT/R.INSTALL494d91fc60b94/RANN/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-RANN/00new/RANN/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RANN) begin installing package ‘spatstat.sparse’ * installing *source* package ‘prettyunits’ ... ** package ‘prettyunits’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prettyunits) begin installing package ‘lmtest’ * installing *source* package ‘colorspace’ ... ** package ‘colorspace’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeHUUa8/R.INSTALL46f9738ed36f/colorspace/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colorspace.c -o colorspace.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o colorspace.so colorspace.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeHUUa8/R.INSTALL46f9738ed36f/colorspace/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-colorspace/00new/colorspace/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (colorspace) begin installing package ‘munsell’ * installing *source* package ‘xfun’ ... ** package ‘xfun’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpB2sfPI/R.INSTALL4853b55eb2eb1/xfun/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o xfun.so base64.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpB2sfPI/R.INSTALL4853b55eb2eb1/xfun/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-xfun/00new/xfun/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xfun) begin installing package ‘highr’ * installing *source* package ‘askpass’ ... ** package ‘askpass’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpqekzJM/R.INSTALL49b94c82f9eb/askpass/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c askpass.c -o askpass.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o askpass.so askpass.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpqekzJM/R.INSTALL49b94c82f9eb/askpass/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-askpass/00new/askpass/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (askpass) begin installing package ‘tinytex’ * installing *source* package ‘ps’ ... ** package ‘ps’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5KtVs3/R.INSTALL48737372d09f7/ps/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -Wl,-O1 -Wall px.c -o px clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api-common.c -o api-common.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c common.c -o common.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c extra.c -o extra.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dummy.c -o dummy.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c error-codes.c -o error-codes.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c posix.c -o posix.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api-posix.c -o api-posix.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c linux.c -o linux.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api-linux.c -o api-linux.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o cleancall.o posix.o api-posix.o linux.o api-linux.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5KtVs3/R.INSTALL48737372d09f7/ps/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-ps/00new/ps ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ps) begin installing package ‘openssl’ * installing *source* package ‘here’ ... ** package ‘here’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (here) begin installing package ‘processx’ * installing *source* package ‘FNN’ ... ** package ‘FNN’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpm0m9j8/R.INSTALL4799c4c555be5/FNN/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ANN.cpp -o ANN.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KNN_ANN.cpp -o KNN_ANN.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KNN_correlation_distance.cpp -o KNN_correlation_distance.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KNN_cover_test.cpp -o KNN_cover_test.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KNN_cover_tree.cpp -o KNN_cover_tree.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KNN_mutual_information.cpp -o KNN_mutual_information.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bd_fix_rad_search.cpp -o bd_fix_rad_search.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bd_pr_search.cpp -o bd_pr_search.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bd_search.cpp -o bd_search.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bd_tree.cpp -o bd_tree.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c brute.cpp -o brute.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init_FNN.c -o init_FNN.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kd_dump.cpp -o kd_dump.o kd_dump.cpp:44:14: warning: unused variable 'EPSILON' [-Wunused-const-variable] 44 | const double EPSILON = 1E-5; // small number for float comparison | ^~~~~~~ 1 warning generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kd_fix_rad_search.cpp -o kd_fix_rad_search.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kd_pr_search.cpp -o kd_pr_search.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kd_search.cpp -o kd_search.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kd_split.cpp -o kd_split.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kd_tree.cpp -o kd_tree.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kd_util.cpp -o kd_util.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c label_point.cpp -o label_point.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c perf.cpp -o perf.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o FNN.so ANN.o KNN_ANN.o KNN_correlation_distance.o KNN_cover_test.o KNN_cover_tree.o KNN_mutual_information.o bd_fix_rad_search.o bd_pr_search.o bd_search.o bd_tree.o brute.o init_FNN.o kd_dump.o kd_fix_rad_search.o kd_pr_search.o kd_search.o kd_split.o kd_tree.o kd_util.o label_point.o perf.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR rm -f *.o core make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpm0m9j8/R.INSTALL4799c4c555be5/FNN/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-FNN/00new/FNN/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FNN) * installing *source* package ‘bit’ ... ** package ‘bit’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWU2908/R.INSTALL47c0445af35c3/bit/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c attrutil.c -o attrutil.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bit.c -o bit.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c chunkutil.c -o chunkutil.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c clone.c -o clone.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c integerutil.c -o integerutil.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c merge.c -o merge.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rle.c -o rle.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sort.c -o sort.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o bit.so attrutil.o bit.o chunkutil.o clone.o init.o integerutil.o merge.o rle.o sort.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWU2908/R.INSTALL47c0445af35c3/bit/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-bit/00new/bit/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bit) begin installing package ‘bit64’ * installing *source* package ‘highr’ ... ** package ‘highr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (highr) * installing *source* package ‘irlba’ ... ** package ‘irlba’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpm1jKoL/R.INSTALL4907c52d543a0/irlba/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/R-d-clang-xtra/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c irlb.c -o irlb.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/R-d-clang-xtra/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utility.c -o utility.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o irlba.so irlb.o utility.o -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpm1jKoL/R.INSTALL4907c52d543a0/irlba/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-irlba/00new/irlba/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (irlba) * installing *source* package ‘caTools’ ... ** package ‘caTools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTn6Id7/R.INSTALL49bac67f0001c/caTools/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Gif2R.cpp -o Gif2R.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c GifTools.cpp -o GifTools.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c caTools_init.c -o caTools_init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c runfunc.c -o runfunc.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o caTools.so Gif2R.o GifTools.o caTools_init.o runfunc.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTn6Id7/R.INSTALL49bac67f0001c/caTools/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-caTools/00new/caTools/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (caTools) begin installing package ‘gplots’ * installing *source* package ‘munsell’ ... ** package ‘munsell’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (munsell) * installing *source* package ‘BiocGenerics’ ... ** package ‘BiocGenerics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘aperm’ in package ‘BiocGenerics’ Creating a new generic function for ‘append’ in package ‘BiocGenerics’ Creating a new generic function for ‘as.data.frame’ in package ‘BiocGenerics’ Creating a new generic function for ‘cbind’ in package ‘BiocGenerics’ Creating a new generic function for ‘rbind’ in package ‘BiocGenerics’ Creating a new generic function for ‘do.call’ in package ‘BiocGenerics’ Creating a new generic function for ‘duplicated’ in package ‘BiocGenerics’ Creating a new generic function for ‘anyDuplicated’ in package ‘BiocGenerics’ Creating a new generic function for ‘eval’ in package ‘BiocGenerics’ Creating a new generic function for ‘pmax’ in package ‘BiocGenerics’ Creating a new generic function for ‘pmin’ in package ‘BiocGenerics’ Creating a new generic function for ‘pmax.int’ in package ‘BiocGenerics’ Creating a new generic function for ‘pmin.int’ in package ‘BiocGenerics’ Creating a new generic function for ‘Reduce’ in package ‘BiocGenerics’ Creating a new generic function for ‘Filter’ in package ‘BiocGenerics’ Creating a new generic function for ‘Find’ in package ‘BiocGenerics’ Creating a new generic function for ‘Map’ in package ‘BiocGenerics’ Creating a new generic function for ‘Position’ in package ‘BiocGenerics’ Creating a new generic function for ‘get’ in package ‘BiocGenerics’ Creating a new generic function for ‘mget’ in package ‘BiocGenerics’ Creating a new generic function for ‘grep’ in package ‘BiocGenerics’ Creating a new generic function for ‘grepl’ in package ‘BiocGenerics’ Creating a new generic function for ‘is.unsorted’ in package ‘BiocGenerics’ Creating a new generic function for ‘lapply’ in package ‘BiocGenerics’ Creating a new generic function for ‘sapply’ in package ‘BiocGenerics’ Creating a new generic function for ‘mapply’ in package ‘BiocGenerics’ Creating a new generic function for ‘match’ in package ‘BiocGenerics’ Creating a new generic function for ‘order’ in package ‘BiocGenerics’ Creating a new generic function for ‘paste’ in package ‘BiocGenerics’ Creating a new generic function for ‘rank’ in package ‘BiocGenerics’ Creating a new generic function for ‘rownames’ in package ‘BiocGenerics’ Creating a new generic function for ‘colnames’ in package ‘BiocGenerics’ Creating a new generic function for ‘saveRDS’ in package ‘BiocGenerics’ Creating a new generic function for ‘union’ in package ‘BiocGenerics’ Creating a new generic function for ‘intersect’ in package ‘BiocGenerics’ Creating a new generic function for ‘setdiff’ in package ‘BiocGenerics’ Creating a new generic function for ‘table’ in package ‘BiocGenerics’ Creating a new generic function for ‘tapply’ in package ‘BiocGenerics’ Creating a new generic function for ‘unique’ in package ‘BiocGenerics’ Creating a new generic function for ‘unsplit’ in package ‘BiocGenerics’ Creating a new generic function for ‘var’ in package ‘BiocGenerics’ Creating a new generic function for ‘sd’ in package ‘BiocGenerics’ Creating a new generic function for ‘which.min’ in package ‘BiocGenerics’ Creating a new generic function for ‘which.max’ in package ‘BiocGenerics’ Creating a new generic function for ‘IQR’ in package ‘BiocGenerics’ Creating a new generic function for ‘mad’ in package ‘BiocGenerics’ Creating a new generic function for ‘xtabs’ in package ‘BiocGenerics’ Creating a new generic function for ‘basename’ in package ‘BiocGenerics’ Creating a new generic function for ‘dirname’ in package ‘BiocGenerics’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocGenerics) begin installing package ‘S4Vectors’ begin installing package ‘Biobase’ * installing *source* package ‘tinytex’ ... ** package ‘tinytex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinytex) * installing *source* package ‘yaml’ ... ** package ‘yaml’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyOa5aa/R.INSTALL485aa2aa2baa2/yaml/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api.c -o api.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dumper.c -o dumper.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c emitter.c -o emitter.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c implicit.c -o implicit.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c loader.c -o loader.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c parser.c -o parser.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c r_emit.c -o r_emit.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c r_ext.c -o r_ext.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c r_parse.c -o r_parse.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c reader.c -o reader.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c scanner.c -o scanner.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c writer.c -o writer.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyOa5aa/R.INSTALL485aa2aa2baa2/yaml/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-yaml/00new/yaml/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (yaml) begin installing package ‘knitr’ * installing *source* package ‘lmtest’ ... ** package ‘lmtest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using Fortran compiler: ‘Debian flang-new version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWdUVBW/R.INSTALL49f286df81825/lmtest/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o flang-new-18 -fpic -g -O2 -c pan.f -o pan.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o lmtest.so init.o pan.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWdUVBW/R.INSTALL49f286df81825/lmtest/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-lmtest/00new/lmtest/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lmtest) * installing *source* package ‘spatstat.univar’ ... ** package ‘spatstat.univar’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTAsZLC/R.INSTALL49e5b3617dbce/spatstat.univar/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c access.c -o access.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c adaptive.c -o adaptive.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colonel.c -o colonel.o colonel.c:58:21: warning: unused variable 'bb' [-Wunused-variable] 58 | int i, j, Nx, Nr, bb; | ^~ colonel.c:59:37: warning: unused variable 'root2pi' [-Wunused-variable] 59 | double xi, wi, uij, temp, kvalue, root2pi; | ^~~~~~~ colonel.c:216:24: warning: unused variable 'bb' [-Wunused-variable] 216 | int i, j, k, Nx, Nr, bb; | ^~ colonel.c:217:41: warning: unused variable 'root2pi' [-Wunused-variable] 217 | double dr, xi, wi, vij, temp, kvalue, root2pi; | ^~~~~~~ colonel.c:416:21: warning: unused variable 'bb' [-Wunused-variable] 416 | int i, j, Nx, Nr, bb, jbdry; | ^~ colonel.c:418:40: warning: unused variable 'root2pi' [-Wunused-variable] 418 | double kvalue, denomj, temp, thresh, root2pi; | ^~~~~~~ colonel.c:651:21: warning: unused variable 'bb' [-Wunused-variable] 651 | int i, j, Nx, Nr, bb, jbdry, jupperi; | ^~ colonel.c:651:32: warning: unused variable 'jupperi' [-Wunused-variable] 651 | int i, j, Nx, Nr, bb, jbdry, jupperi; | ^~~~~~~ colonel.c:653:40: warning: unused variable 'root2pi' [-Wunused-variable] 653 | double kvalue, denomj, temp, thresh, root2pi; | ^~~~~~~ 9 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hotrod.c -o hotrod.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kernels.c -o kernels.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c tabnum.c -o tabnum.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c taylorboot.c -o taylorboot.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c whist.c -o whist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o spatstat.univar.so access.o adaptive.o colonel.o hotrod.o init.o kernels.o tabnum.o taylorboot.o whist.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTAsZLC/R.INSTALL49e5b3617dbce/spatstat.univar/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-spatstat.univar/00new/spatstat.univar/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spatstat.univar) * installing *source* package ‘digest’ ... ** package ‘digest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCD4GMr/R.INSTALL486c430d87c8b/digest/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SpookyV2.cpp -o SpookyV2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c aes.c -o aes.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c blake3.c -o blake3.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c blake3_dispatch.c -o blake3_dispatch.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c blake3_portable.c -o blake3_portable.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c crc32.c -o crc32.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c crc32c.cpp -o crc32c.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c crc32c_portable.cpp -o crc32c_portable.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c digest.c -o digest.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c digest2int.c -o digest2int.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pmurhash.c -o pmurhash.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c raes.c -o raes.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sha1.c -o sha1.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sha2.c -o sha2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sha256.c -o sha256.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c spooky_serialize.cpp -o spooky_serialize.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c xxhash.c -o xxhash.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o crc32c.o crc32c_portable.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCD4GMr/R.INSTALL486c430d87c8b/digest/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-digest/00new/digest/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (digest) begin installing package ‘future’ begin installing package ‘progressr’ * installing *source* package ‘spatstat.data’ ... ** package ‘spatstat.data’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spatstat.data) begin installing package ‘spatstat.geom’ * installing *source* package ‘sp’ ... ** package ‘sp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmoV5ya/R.INSTALL46f79122b51a3/sp/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rcentroid.c -o Rcentroid.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c gcdist.c -o gcdist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pip.c -o pip.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pip2.c -o pip2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sp_xports.c -o sp_xports.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c surfaceArea.c -o surfaceArea.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c zerodist.c -o zerodist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o sp.so Rcentroid.o gcdist.o init.o pip.o pip2.o sp_xports.o surfaceArea.o zerodist.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmoV5ya/R.INSTALL46f79122b51a3/sp/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-sp/00new/sp/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sp) * installing *source* package ‘openssl’ ... ** package ‘openssl’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS= Using PKG_LIBS=-l:libssl.so.3 -l:libcrypto.so.3 ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKc7b13/R.INSTALL4a1452133390a/openssl/src' rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c aes.c -o aes.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bignum.c -o bignum.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cert.c -o cert.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c compatibility.c -o compatibility.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diffie.c -o diffie.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c envelope.c -o envelope.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c error.c -o error.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hash.c -o hash.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c info.c -o info.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c keygen.c -o keygen.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c keys.c -o keys.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c onload.c -o onload.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c openssh.c -o openssh.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c password.c -o password.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pbkdf.c -o pbkdf.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pem.c -o pem.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pkcs12.c -o pkcs12.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pkcs7.c -o pkcs7.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rand.c -o rand.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rsa.c -o rsa.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c signing.c -o signing.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ssl.c -o ssl.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stream.c -o stream.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write.c -o write.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c x25519.c -o x25519.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bcrypt/blowfish.c -o bcrypt/blowfish.o ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.3 -l:libcrypto.so.3 -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKc7b13/R.INSTALL4a1452133390a/openssl/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-openssl/00new/openssl/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (openssl) begin installing package ‘httr’ * installing *source* package ‘processx’ ... ** package ‘processx’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTIAO4k/R.INSTALL4a19b2764f23e/processx/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -Wl,-O1 -Wall tools/px.c -o tools/px clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -Wl,-O1 -I../inst/include -Wall tools/sock.c -o tools/sock clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -Wl,-O1 supervisor/supervisor.c \ supervisor/utils.c -o supervisor/supervisor clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c client.c -o client.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c errors.c -o errors.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L"/home/hornik/tmp/R-d-clang-xtra/lib" -Wl,-O1 -o client.so base64.o client.o errors.o \ -L"/home/hornik/tmp/R-d-clang-xtra/lib" -lR if [ -n "" ]; then \ echo Removing libR.so dependency from client.so; \ patchelf --remove-needed libR.so client.so; \ fi clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c poll.c -o poll.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c processx-connection.c -o processx-connection.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c processx-vector.c -o processx-vector.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c create-time.c -o create-time.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/childlist.c -o unix/childlist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/connection.c -o unix/connection.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/processx.c -o unix/processx.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/sigchld.c -o unix/sigchld.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/utils.c -o unix/utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/named_pipe.c -o unix/named_pipe.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTIAO4k/R.INSTALL4a19b2764f23e/processx/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-processx/00new/processx ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (processx) begin installing package ‘callr’ * installing *source* package ‘spatstat.sparse’ ... ** package ‘spatstat.sparse’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKFVsm6/R.INSTALL49e6244ced8ce/spatstat.sparse/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c linalg.c -o linalg.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sparselinalg.c -o sparselinalg.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o spatstat.sparse.so init.o linalg.o sparselinalg.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKFVsm6/R.INSTALL49e6244ced8ce/spatstat.sparse/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-spatstat.sparse/00new/spatstat.sparse/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spatstat.sparse) * installing *source* package ‘gplots’ ... ** package ‘gplots’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gplots) begin installing package ‘ROCR’ * installing *source* package ‘progressr’ ... ** package ‘progressr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (progressr) * installing *source* package ‘fs’ ... ** package ‘fs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpedBpQ6/R.INSTALL46f902f71435e/fs/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dir.cc -o dir.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c error.cc -o error.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c file.cc -o file.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fs.cc -o fs.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c getmode.cc -o getmode.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c id.cc -o id.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.cc -o init.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c link.cc -o link.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c path.cc -o path.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.cc -o utils.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/getmode.cc -o unix/getmode.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bsd/setmode.c -o bsd/setmode.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bsd/strmode.c -o bsd/strmode.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bsd/reallocarray.c -o bsd/reallocarray.o touch libuv-1.44.2/aclocal.m4 && touch libuv-1.44.2/configure && touch libuv-1.44.2/Makefile.in (cd libuv-1.44.2 \ && CC="clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer" CPPFLAGS="-I/usr/local/include" CFLAGS="-g -O3 -Wall -pedantic -fpic -fvisibility=hidden -std=c99" AR="ar" RANLIB="ranlib" LDFLAGS="-Wl,-O1" ./configure --quiet) make --directory=libuv-1.44.2 \ HAVE_DTRACE=0 make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpedBpQ6/R.INSTALL46f902f71435e/fs/src/libuv-1.44.2' CC src/libuv_la-fs-poll.lo CC src/libuv_la-idna.lo CC src/libuv_la-inet.lo CC src/libuv_la-random.lo CC src/libuv_la-strscpy.lo CC src/libuv_la-threadpool.lo CC src/libuv_la-timer.lo CC src/libuv_la-uv-data-getter-setters.lo CC src/libuv_la-uv-common.lo CC src/libuv_la-version.lo CC src/libuv_la-strtok.lo CC src/unix/libuv_la-async.lo CC src/unix/libuv_la-core.lo CC src/unix/libuv_la-dl.lo CC src/unix/libuv_la-fs.lo CC src/unix/libuv_la-getaddrinfo.lo CC src/unix/libuv_la-getnameinfo.lo CC src/unix/libuv_la-loop-watcher.lo CC src/unix/libuv_la-loop.lo CC src/unix/libuv_la-pipe.lo CC src/unix/libuv_la-poll.lo CC src/unix/libuv_la-process.lo CC src/unix/libuv_la-random-devurandom.lo CC src/unix/libuv_la-signal.lo CC src/unix/libuv_la-stream.lo CC src/unix/libuv_la-tcp.lo CC src/unix/libuv_la-thread.lo CC src/unix/libuv_la-tty.lo CC src/unix/libuv_la-udp.lo CC src/unix/libuv_la-linux-core.lo CC src/unix/libuv_la-linux-inotify.lo CC src/unix/libuv_la-linux-syscalls.lo CC src/unix/libuv_la-procfs-exepath.lo CC src/unix/libuv_la-proctitle.lo CC src/unix/libuv_la-random-getrandom.lo CC src/unix/libuv_la-random-sysctl-linux.lo CC src/unix/libuv_la-epoll.lo CCLD libuv.la make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpedBpQ6/R.INSTALL46f902f71435e/fs/src/libuv-1.44.2' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o fs.so dir.o error.o file.o fs.o getmode.o id.o init.o link.o path.o utils.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv-1.44.2/.libs/libuv.a -pthread -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpedBpQ6/R.INSTALL46f902f71435e/fs/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-fs/00new/fs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fs) * installing *source* package ‘cli’ ... ** package ‘cli’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5kS70g/R.INSTALL497a4d0b5f4/cli/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c ansi.c -o ansi.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c diff.c -o diff.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c errors.c -o errors.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c glue.c -o glue.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c inst.c -o inst.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress-unix.c -o keypress-unix.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress-win.c -o keypress-win.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress.c -o keypress.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c progress-altrep.c -o progress-altrep.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c progress.c -o progress.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c sha1.c -o sha1.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c sha256.c -o sha256.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c thread.c -o thread.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c tty.c -o tty.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c utf8.c -o utf8.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vt.c -o vt.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vtparse.c -o vtparse.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vtparse_table.c -o vtparse_table.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c win-utf8.c -o win-utf8.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c winfiles.c -o winfiles.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o cli.so ansi.o cleancall.o diff.o errors.o glue.o init.o inst.o keypress-unix.o keypress-win.o keypress.o md5.o progress-altrep.o progress.o sha1.o sha256.o thread.o tty.o utf8.o utils.o vt.o vtparse.o vtparse_table.o win-utf8.o winfiles.o -lpthread -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5kS70g/R.INSTALL497a4d0b5f4/cli/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-cli/00new/cli/libs ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cli) begin installing package ‘desc’ * installing *source* package ‘matrixStats’ ... ** package ‘matrixStats’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMf594I/R.INSTALL492e8201df7f0/matrixStats/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c 000.init.c -o 000.init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c allocMatrix2.c -o allocMatrix2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c anyMissing.c -o anyMissing.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c binCounts.c -o binCounts.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c binMeans.c -o binMeans.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colCounts.c -o colCounts.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colOrderStats.c -o colOrderStats.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colRanges.c -o colRanges.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diff2.c -o diff2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c indexByRow.c -o indexByRow.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c logSumExp.c -o logSumExp.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mean2.c -o mean2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c naming.c -o naming.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c productExpSumLog.c -o productExpSumLog.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c psortKM.c -o psortKM.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCounts.c -o rowCounts.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCummaxs.c -o rowCummaxs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCummins.c -o rowCummins.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCumprods.c -o rowCumprods.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCumsums.c -o rowCumsums.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowDiffs.c -o rowDiffs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowLogSumExp.c -o rowLogSumExp.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowMads.c -o rowMads.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowMeans2.c -o rowMeans2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowMedians.c -o rowMedians.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowOrderStats.c -o rowOrderStats.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowRanges.c -o rowRanges.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowRanksWithTies.c -o rowRanksWithTies.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowSums2.c -o rowSums2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowVars.c -o rowVars.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c signTabulate.c -o signTabulate.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sum2.c -o sum2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c validateIndices.c -o validateIndices.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c weightedMean.c -o weightedMean.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c weightedMedian.c -o weightedMedian.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c x_OP_y.c -o x_OP_y.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o naming.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMf594I/R.INSTALL492e8201df7f0/matrixStats/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-matrixStats/00new/matrixStats/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (matrixStats) begin installing package ‘MatrixGenerics’ * installing *source* package ‘diffobj’ ... ** package ‘diffobj’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkoHscw/R.INSTALL49c8428cbefa5/diffobj/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diff.c -o diff.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diffobj.c -o diffobj.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o diffobj.so diff.o diffobj.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkoHscw/R.INSTALL49c8428cbefa5/diffobj/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-diffobj/00new/diffobj/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (diffobj) * installing *source* package ‘bit64’ ... ** package ‘bit64’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOFdnwf/R.INSTALL4a38e732ebbb1/bit64/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bsearch.c -o bsearch.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cache.c -o cache.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hash64.c -o hash64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c integer64.c -o integer64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sort64.c -o sort64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sortuse64.c -o sortuse64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o bit64.so bsearch.o cache.o hash64.o init.o integer64.o sort64.o sortuse64.o -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOFdnwf/R.INSTALL4a38e732ebbb1/bit64/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-bit64/00new/bit64/libs ** R ** data ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bit64) begin installing package ‘hdf5r’ * installing *source* package ‘ROCR’ ... ** package ‘ROCR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROCR) * installing *source* package ‘future’ ... ** package ‘future’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (future) begin installing package ‘future.apply’ * installing *source* package ‘knitr’ ... ** package ‘knitr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (knitr) * installing *source* package ‘httr’ ... ** package ‘httr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httr) * installing *source* package ‘Biobase’ ... ** package ‘Biobase’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpICq5vY/R.INSTALL4a5fc37c28d2f/Biobase/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rinit.c -o Rinit.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c anyMissing.c -o anyMissing.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c envir.c -o envir.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c matchpt.c -o matchpt.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowMedians.c -o rowMedians.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sublist_extract.c -o sublist_extract.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpICq5vY/R.INSTALL4a5fc37c28d2f/Biobase/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Biobase/00new/Biobase/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Biobase) * installing *source* package ‘desc’ ... ** package ‘desc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (desc) * installing *source* package ‘rlang’ ... ** package ‘rlang’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpqnZfvh/R.INSTALL499e63a394236/rlang/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c capture.c -o capture.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c internal.c -o internal.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rlang.c -o rlang.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c version.c -o version.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o rlang.so capture.o internal.o rlang.o version.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpqnZfvh/R.INSTALL499e63a394236/rlang/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-rlang/00new/rlang/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlang) begin installing package ‘cachem’ begin installing package ‘lifecycle’ begin installing package ‘htmltools’ begin installing package ‘fitdistrplus’ begin installing package ‘waldo’ * installing *source* package ‘callr’ ... ** package ‘callr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (callr) begin installing package ‘pkgbuild’ * installing *source* package ‘MatrixGenerics’ ... ** package ‘MatrixGenerics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘rowAlls’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colAlls’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowAnyNAs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colAnyNAs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowAnys’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colAnys’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowAvgsPerColSet’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colAvgsPerRowSet’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCollapse’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCollapse’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCounts’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCounts’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCummaxs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCummaxs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCummins’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCummins’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCumprods’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCumprods’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCumsums’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCumsums’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowIQRDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colIQRDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowIQRs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colIQRs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowLogSumExps’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colLogSumExps’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMadDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMadDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMads’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMads’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMaxs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMaxs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMeans2’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMeans2’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMedians’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMedians’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMins’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMins’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowOrderStats’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colOrderStats’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowProds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colProds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowQuantiles’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colQuantiles’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowRanges’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colRanges’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowRanks’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colRanks’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowSdDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colSdDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowSds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colSds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowSums2’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colSums2’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowTabulates’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colTabulates’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowVarDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colVarDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowVars’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colVars’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowWeightedMads’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colWeightedMads’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowWeightedMeans’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colWeightedMeans’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowWeightedMedians’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colWeightedMedians’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowWeightedSds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colWeightedSds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowWeightedVars’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colWeightedVars’ in package ‘MatrixGenerics’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MatrixGenerics) * installing *source* package ‘future.apply’ ... ** package ‘future.apply’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (future.apply) * installing *source* package ‘Rcpp’ ... ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp651EvU/R.INSTALL49af62da4f6a0/Rcpp/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api.cpp -o api.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c attributes.cpp -o attributes.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c barrier.cpp -o barrier.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c date.cpp -o date.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c module.cpp -o module.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_init.cpp -o rcpp_init.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp651EvU/R.INSTALL49af62da4f6a0/Rcpp/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rcpp/00new/Rcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcpp) begin installing package ‘sitmo’ begin installing package ‘spam’ begin installing package ‘RcppTOML’ begin installing package ‘later’ begin installing package ‘plyr’ begin installing package ‘RcppAnnoy’ begin installing package ‘RcppHNSW’ begin installing package ‘Rtsne’ begin installing package ‘RcppArmadillo’ begin installing package ‘RcppEigen’ begin installing package ‘sparseMatrixStats’ * installing *source* package ‘cachem’ ... ** package ‘cachem’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpuqk6P0/R.INSTALL4c3835a71e1cb/cachem/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cache.c -o cache.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o cachem.so cache.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpuqk6P0/R.INSTALL4c3835a71e1cb/cachem/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-cachem/00new/cachem/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cachem) begin installing package ‘memoise’ * installing *source* package ‘lifecycle’ ... ** package ‘lifecycle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lifecycle) begin installing package ‘vctrs’ begin installing package ‘gtable’ * installing *source* package ‘farver’ ... ** package ‘farver’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpO7eCzo/R.INSTALL46f7732fa7009/farver/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ColorSpace.cpp -o ColorSpace.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Comparison.cpp -o Comparison.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Conversion.cpp -o Conversion.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c encode.cpp -o encode.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c farver.cpp -o farver.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.cpp -o init.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o farver.so ColorSpace.o Comparison.o Conversion.o encode.o farver.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpO7eCzo/R.INSTALL46f7732fa7009/farver/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-farver/00new/farver/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (farver) begin installing package ‘scales’ * installing *source* package ‘waldo’ ... ** package ‘waldo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (waldo) * installing *source* package ‘pkgbuild’ ... ** package ‘pkgbuild’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgbuild) begin installing package ‘pkgload’ * installing *source* package ‘data.table’ ... ** package ‘data.table’ successfully unpacked and MD5 sums checked ** using staged installation zlib 1.3.1 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDKCUAp/R.INSTALL46f6c5282fd08/data.table/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c assign.c -o assign.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c between.c -o between.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bmerge.c -o bmerge.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c chmatch.c -o chmatch.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cj.c -o cj.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c coalesce.c -o coalesce.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dogroups.c -o dogroups.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fastmean.c -o fastmean.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fcast.c -o fcast.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fifelse.c -o fifelse.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fmelt.c -o fmelt.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c forder.c -o forder.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c frank.c -o frank.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fread.c -o fread.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c freadR.c -o freadR.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c froll.c -o froll.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c frollR.c -o frollR.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c frolladaptive.c -o frolladaptive.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fsort.c -o fsort.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fwrite.c -o fwrite.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fwriteR.c -o fwriteR.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c gsumm.c -o gsumm.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c idatetime.c -o idatetime.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ijoin.c -o ijoin.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c inrange.c -o inrange.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c nafill.c -o nafill.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c negate.c -o negate.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c nqrecreateindices.c -o nqrecreateindices.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c openmp-utils.c -o openmp-utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c programming.c -o programming.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c quickselect.c -o quickselect.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rbindlist.c -o rbindlist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c reorder.c -o reorder.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c shift.c -o shift.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c snprintf.c -o snprintf.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c subset.c -o subset.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c transpose.c -o transpose.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c types.c -o types.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c uniqlist.c -o uniqlist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vecseq.c -o vecseq.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c wrappers.c -o wrappers.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -lz -L/home/hornik/tmp/R-d-clang-xtra/lib -lR PKG_CFLAGS = PKG_LIBS = -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDKCUAp/R.INSTALL46f6c5282fd08/data.table/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) * installing *source* package ‘memoise’ ... ** package ‘memoise’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (memoise) * installing *source* package ‘BH’ ... ** package ‘BH’ successfully unpacked and MD5 sums checked ** using staged installation ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BH) * installing *source* package ‘htmltools’ ... ** package ‘htmltools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEJw7sF/R.INSTALL4c387cc0e562/htmltools/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c template.c -o template.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o htmltools.so init.o template.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEJw7sF/R.INSTALL4c387cc0e562/htmltools/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-htmltools/00new/htmltools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (htmltools) begin installing package ‘sass’ begin installing package ‘crosstalk’ begin installing package ‘fontawesome’ begin installing package ‘jquerylib’ * installing *source* package ‘gtable’ ... ** package ‘gtable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gtable) begin installing package ‘gridExtra’ * installing *source* package ‘fontawesome’ ... ** package ‘fontawesome’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fontawesome) * installing *source* package ‘jquerylib’ ... ** package ‘jquerylib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jquerylib) * installing *source* package ‘gridExtra’ ... ** package ‘gridExtra’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gridExtra) * installing *source* package ‘pkgload’ ... ** package ‘pkgload’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgload) begin installing package ‘testthat’ * installing *source* package ‘crosstalk’ ... ** package ‘crosstalk’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crosstalk) * installing *source* package ‘plyr’ ... ** package ‘plyr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgiAsTl/R.INSTALL4c57f510894d7/plyr/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c loop_apply.c -o loop_apply.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c split-numeric.cpp -o split-numeric.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o plyr.so RcppExports.o loop_apply.o split-numeric.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgiAsTl/R.INSTALL4c57f510894d7/plyr/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-plyr/00new/plyr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plyr) begin installing package ‘reshape’ * installing *source* package ‘scales’ ... ** package ‘scales’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scales) * installing *source* package ‘sitmo’ ... ** package ‘sitmo’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiokRwZ/R.INSTALL4c5732cb67be5/sitmo/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sitmo_demo.cpp -o sitmo_demo.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sitmo_parallel.cpp -o sitmo_parallel.o sitmo_parallel.cpp:37:16: warning: unused variable 'ncores' [-Wunused-variable] 37 | unsigned int ncores = seeds.size(); | ^~~~~~ 1 warning generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sitmo_runif.cpp -o sitmo_runif.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o sitmo.so RcppExports.o sitmo_demo.o sitmo_parallel.o sitmo_runif.o -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiokRwZ/R.INSTALL4c5732cb67be5/sitmo/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-sitmo/00new/sitmo/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sitmo) begin installing package ‘dqrng’ * installing *source* package ‘RcppTOML’ ... ** package ‘RcppTOML’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmSAqaY/R.INSTALL4c5754c4384c0/RcppTOML/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DTOML_ENABLE_FLOAT16=0 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DTOML_ENABLE_FLOAT16=0 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c parse.cpp -o parse.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o RcppTOML.so RcppExports.o parse.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmSAqaY/R.INSTALL4c5754c4384c0/RcppTOML/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-RcppTOML/00new/RcppTOML/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppTOML) begin installing package ‘reticulate’ * installing *source* package ‘later’ ... ** package ‘later’ successfully unpacked and MD5 sums checked ** using staged installation Running configure script -latomic linker flag not needed. Found UBSAN. Will skip tests that raise false positives. ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpASocNj/R.INSTALL4c579e571d07/later/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c callback_registry.cpp -o callback_registry.o In file included from callback_registry.cpp:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c debug.cpp -o debug.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fd.cpp -o fd.o In file included from fd.cpp:7: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c later.cpp -o later.o In file included from later.cpp:1: In file included from ./later.h:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c later_posix.cpp -o later_posix.o In file included from later_posix.cpp:9: In file included from ./later.h:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c later_win32.cpp -o later_win32.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c timer_posix.cpp -o timer_posix.o In file included from timer_posix.cpp:6: In file included from ./timer_posix.h:8: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c timestamp_unix.cpp -o timestamp_unix.o In file included from timestamp_unix.cpp:5: In file included from ./timeconv.h:9: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c timestamp_win32.cpp -o timestamp_win32.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c tinycthread.c -o tinycthread.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c wref.c -o wref.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o later.so RcppExports.o callback_registry.o debug.o fd.o init.o later.o later_posix.o later_win32.o timer_posix.o timestamp_unix.o timestamp_win32.o tinycthread.o wref.o -pthread -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpASocNj/R.INSTALL4c579e571d07/later/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-later/00new/later/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (later) begin installing package ‘promises’ * installing *source* package ‘reshape’ ... ** package ‘reshape’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reshape) * installing *source* package ‘Rtsne’ ... ** package ‘Rtsne’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmph8ouqW/R.INSTALL4c58468eee670/Rtsne/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rtsne.cpp -o Rtsne.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c normalize_input.cpp -o normalize_input.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sptree.cpp -o sptree.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c tsne.cpp -o tsne.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o Rtsne.so RcppExports.o Rtsne.o normalize_input.o sptree.o tsne.o -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmph8ouqW/R.INSTALL4c58468eee670/Rtsne/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rtsne/00new/Rtsne/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rtsne) * installing *source* package ‘fitdistrplus’ ... ** package ‘fitdistrplus’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fitdistrplus) * installing *source* package ‘RcppHNSW’ ... ** package ‘RcppHNSW’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfGFzVA/R.INSTALL4c57d5fc4da69/RcppHNSW/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNO_MANUAL_VECTORIZATION -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNO_MANUAL_VECTORIZATION -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c hnsw.cpp -o hnsw.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o RcppHNSW.so RcppExports.o hnsw.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfGFzVA/R.INSTALL4c57d5fc4da69/RcppHNSW/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-RcppHNSW/00new/RcppHNSW/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppHNSW) * installing *source* package ‘RcppArmadillo’ ... ** package ‘RcppArmadillo’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 accepts -g... yes checking for clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 option to enable C++11 features... none needed checking how to run the C++ preprocessor... clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -E checking whether the compiler supports GNU C++... (cached) yes checking whether clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 accepts -g... (cached) yes checking for clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 option to enable C++11 features... (cached) none needed checking whether we have a suitable tempdir... /home/hornik/tmp/scratch checking whether R CMD SHLIB can already compile programs using OpenMP... yes checking LAPACK_LIBS... system LAPACK found configure: creating ./config.status config.status: creating inst/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h config.status: creating src/Makevars ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpC5ysCw/R.INSTALL4c58537e4b7b8/RcppArmadillo/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppArmadillo.cpp -o RcppArmadillo.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fastLm.cpp -o fastLm.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o RcppArmadillo.so RcppArmadillo.o RcppExports.o fastLm.o -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpC5ysCw/R.INSTALL4c58537e4b7b8/RcppArmadillo/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-RcppArmadillo/00new/RcppArmadillo/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppArmadillo) * installing *source* package ‘dqrng’ ... ** package ‘dqrng’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpoy7WTP/R.INSTALL4cff230d4cc12/dqrng/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dqrng.cpp -o dqrng.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c generateSeedVectors.cpp -o generateSeedVectors.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o dqrng.so RcppExports.o dqrng.o generateSeedVectors.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpoy7WTP/R.INSTALL4cff230d4cc12/dqrng/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-dqrng/00new/dqrng/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dqrng) * installing *source* package ‘sparseMatrixStats’ ... ** package ‘sparseMatrixStats’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZzLyeQ/R.INSTALL4c58929728f40/sparseMatrixStats/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c SparseMatrixView.cpp -o SparseMatrixView.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c methods.cpp -o methods.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c row_methods.cpp -o row_methods.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o sparseMatrixStats.so RcppExports.o SparseMatrixView.o methods.o row_methods.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZzLyeQ/R.INSTALL4c58929728f40/sparseMatrixStats/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-sparseMatrixStats/00new/sparseMatrixStats/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparseMatrixStats) * installing *source* package ‘RcppAnnoy’ ... ** package ‘RcppAnnoy’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4QNF3C/R.INSTALL4c581179585b4/RcppAnnoy/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c annoy.cpp -o annoy.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c arch.cpp -o arch.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c version.cpp -o version.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o RcppAnnoy.so RcppExports.o annoy.o arch.o init.o version.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4QNF3C/R.INSTALL4c581179585b4/RcppAnnoy/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-RcppAnnoy/00new/RcppAnnoy/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppAnnoy) * installing *source* package ‘S4Vectors’ ... ** package ‘S4Vectors’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0DsG62/R.INSTALL4a5fd8e36236/S4Vectors/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c AEbufs.c -o AEbufs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c DataFrame_class.c -o DataFrame_class.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Hits_class.c -o Hits_class.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c LLint_class.c -o LLint_class.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c List_class.c -o List_class.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_S4Vectors.c -o R_init_S4Vectors.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rle_class.c -o Rle_class.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rle_utils.c -o Rle_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SEXP_utils.c -o SEXP_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SimpleList_class.c -o SimpleList_class.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c anyMissing.c -o anyMissing.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c character_utils.c -o character_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c eval_utils.c -o eval_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hash_utils.c -o hash_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c integer_utils.c -o integer_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c logical_utils.c -o logical_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c map_ranges_to_runs.c -o map_ranges_to_runs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c raw_utils.c -o raw_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c safe_arithm.c -o safe_arithm.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sort_utils.c -o sort_utils.o sort_utils.c:263:13: warning: unused function 'sort_uchar_array' [-Wunused-function] 263 | static void sort_uchar_array(unsigned char *x, int nelt, int desc) | ^~~~~~~~~~~~~~~~ 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c subsetting_utils.c -o subsetting_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vector_utils.c -o vector_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o S4Vectors.so AEbufs.o DataFrame_class.o Hits_class.o LLint_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o character_utils.o eval_utils.o hash_utils.o integer_utils.o logical_utils.o map_ranges_to_runs.o raw_utils.o safe_arithm.o sort_utils.o subsetting_utils.o vector_utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0DsG62/R.INSTALL4a5fd8e36236/S4Vectors/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-S4Vectors/00new/S4Vectors/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘normalizeSingleBracketReplacementValue’ with signature ‘"List"’: no definition for class “List” Creating a new generic function for ‘unname’ in package ‘S4Vectors’ Creating a new generic function for ‘expand.grid’ in package ‘S4Vectors’ Creating a new generic function for ‘findMatches’ in package ‘S4Vectors’ Creating a generic function for ‘setequal’ from package ‘base’ in package ‘S4Vectors’ in method for ‘coerce’ with signature ‘"Hits","DFrame"’: no definition for class “DFrame” Creating a generic function for ‘as.factor’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘tabulate’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘cov’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘cor’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘substr’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘substring’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘chartr’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘tolower’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘toupper’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘sub’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘gsub’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘nlevels’ from package ‘base’ in package ‘S4Vectors’ in method for ‘coerce’ with signature ‘"data.table","DFrame"’: no definition for class “data.table” Creating a generic function for ‘complete.cases’ from package ‘stats’ in package ‘S4Vectors’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (S4Vectors) begin installing package ‘IRanges’ begin installing package ‘UCSC.utils’ * installing *source* package ‘promises’ ... ** package ‘promises’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmprrto8R/R.INSTALL4d2be65537e3b/promises/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c promise_task.cpp -o promise_task.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o promises.so RcppExports.o promise_task.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmprrto8R/R.INSTALL4d2be65537e3b/promises/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-promises/00new/promises/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (promises) begin installing package ‘httpuv’ * installing *source* package ‘vctrs’ ... ** package ‘vctrs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQakBM6/R.INSTALL4c5a95c464ad7/vctrs/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c altrep-lazy-character.c -o altrep-lazy-character.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c altrep-rle.c -o altrep-rle.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c altrep.c -o altrep.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c arg-counter.c -o arg-counter.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c arg.c -o arg.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c assert.c -o assert.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c bind.c -o bind.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c c-unchop.c -o c-unchop.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c c.c -o c.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c callables.c -o callables.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cast-bare.c -o cast-bare.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cast-dispatch.c -o cast-dispatch.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cast.c -o cast.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c compare.c -o compare.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c complete.c -o complete.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c conditions.c -o conditions.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c dictionary.c -o dictionary.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c dim.c -o dim.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c empty.c -o empty.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c equal.c -o equal.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c expand.c -o expand.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c fields.c -o fields.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c fill.c -o fill.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c globals.c -o globals.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c group.c -o group.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c growable.c -o growable.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c hash.c -o hash.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c interval.c -o interval.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c match-joint.c -o match-joint.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c match.c -o match.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c missing.c -o missing.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c names.c -o names.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order-collate.c -o order-collate.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order-groups.c -o order-groups.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order-sortedness.c -o order-sortedness.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order-truelength.c -o order-truelength.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order.c -o order.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c poly-op.c -o poly-op.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c proxy-restore.c -o proxy-restore.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c proxy.c -o proxy.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ptype-common.c -o ptype-common.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ptype.c -o ptype.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ptype2-dispatch.c -o ptype2-dispatch.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ptype2.c -o ptype2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rank.c -o rank.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rep.c -o rep.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rlang-dev.c -o rlang-dev.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rlang.c -o rlang.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c runs.c -o runs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c set.c -o set.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c shape.c -o shape.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c size-common.c -o size-common.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c size.c -o size.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-array.c -o slice-array.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-assign-array.c -o slice-assign-array.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-assign.c -o slice-assign.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-chop.c -o slice-chop.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-interleave.c -o slice-interleave.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice.c -o slice.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c split.c -o split.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c subscript-loc.c -o subscript-loc.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c subscript.c -o subscript.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c translate.c -o translate.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-data-frame.c -o type-data-frame.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-date-time.c -o type-date-time.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-factor.c -o type-factor.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-info.c -o type-info.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-integer64.c -o type-integer64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-tibble.c -o type-tibble.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c typeof2-s3.c -o typeof2-s3.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c typeof2.c -o typeof2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c unspecified.c -o unspecified.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils-dispatch.c -o utils-dispatch.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vctrs-core.c -o vctrs-core.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c version.c -o version.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o vctrs.so altrep-lazy-character.o altrep-rle.o altrep.o arg-counter.o arg.o assert.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o empty.o equal.o expand.o fields.o fill.o globals.o group.o growable.o hash.o init.o interval.o match-joint.o match.o missing.o names.o order-collate.o order-groups.o order-sortedness.o order-truelength.o order.o poly-op.o proxy-restore.o proxy.o ptype-common.o ptype.o ptype2-dispatch.o ptype2.o rank.o rep.o rlang-dev.o rlang.o runs.o set.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice-interleave.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-integer64.o type-tibble.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils.o vctrs-core.o version.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQakBM6/R.INSTALL4c5a95c464ad7/vctrs/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-vctrs/00new/vctrs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vctrs) begin installing package ‘tidyselect’ begin installing package ‘pillar’ begin installing package ‘purrr’ begin installing package ‘igraph’ * installing *source* package ‘hdf5r’ ... ** package ‘hdf5r’ successfully unpacked and MD5 sums checked ** using staged installation checking for a sed that does not truncate output... /usr/bin/sed checking for gawk... gawk checking for grep that handles long lines and -e... /usr/bin/grep checking for gcc... clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... yes checking for clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for h5cc... /usr/bin/h5cc checking for HDF5 libraries... yes (version 1.10.10) checking for hdf5.h... yes checking for H5Fcreate in -lhdf5... yes checking for hdf5_hl.h... yes checking for H5LTpath_valid in -lhdf5_hl... yes checking for main in -lhdf5_hl... yes checking for matching HDF5 Fortran wrapper... /usr/bin/h5fc Found hdf5 with version: 1.10.10 checking for ggrep... /usr/bin/grep checking whether /usr/bin/grep accepts -o... yes checking for ggrep... (cached) /usr/bin/grep checking whether /usr/bin/grep accepts -o... yes Using variables: HDF5_LIBS= -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -L. -lhdf5_hl -lhdf5 -lz -lm HDF5_CFLAGS= HDF5_CPPFLAGS=-I/usr/include/hdf5/serial configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2BA2p3/R.INSTALL4be0227024787/hdf5r/src' cp 1_10_3/*.c 1_10_3/*.h . if [ "1.10.6" != "" ]; then patch -p2 < patch_1.10.6; fi patching file datatype_export.c Hunk #1 succeeded at 1901 (offset 1 line). clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c const_export.c -o const_export.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c datatype_export.c -o datatype_export.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5A.c -o Wrapper_auto_H5A.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5.c -o Wrapper_auto_H5.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5D.c -o Wrapper_auto_H5D.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5DS.c -o Wrapper_auto_H5DS.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5E.c -o Wrapper_auto_H5E.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5F.c -o Wrapper_auto_H5F.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5G.c -o Wrapper_auto_H5G.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5I.c -o Wrapper_auto_H5I.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5IM.c -o Wrapper_auto_H5IM.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5L.c -o Wrapper_auto_H5L.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5LT.c -o Wrapper_auto_H5LT.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5O.c -o Wrapper_auto_H5O.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5P.c -o Wrapper_auto_H5P.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5R.c -o Wrapper_auto_H5R.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5S.c -o Wrapper_auto_H5S.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5TB.c -o Wrapper_auto_H5TB.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5T.c -o Wrapper_auto_H5T.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5Z.c -o Wrapper_auto_H5Z.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5FDcore.c -o Wrapper_auto_H5FDcore.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5FDfamily.c -o Wrapper_auto_H5FDfamily.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5FDlog.c -o Wrapper_auto_H5FDlog.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5FDsec2.c -o Wrapper_auto_H5FDsec2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_auto_H5FDstdio.c -o Wrapper_auto_H5FDstdio.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c convert.c -o convert.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c hdf5r_init.c -o hdf5r_init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c H5Error.c -o H5Error.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c H5ls.c -o H5ls.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__USE_MINGW_ANSI_STDIO -fpic -g -O3 -Wall -pedantic -c Wrapper_manual_H5T.c -o Wrapper_manual_H5T.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o hdf5r.so const_export.o datatype_export.o Wrapper_auto_H5A.o Wrapper_auto_H5.o Wrapper_auto_H5D.o Wrapper_auto_H5DS.o Wrapper_auto_H5E.o Wrapper_auto_H5F.o Wrapper_auto_H5G.o Wrapper_auto_H5I.o Wrapper_auto_H5IM.o Wrapper_auto_H5L.o Wrapper_auto_H5LT.o Wrapper_auto_H5O.o Wrapper_auto_H5P.o Wrapper_auto_H5R.o Wrapper_auto_H5S.o Wrapper_auto_H5TB.o Wrapper_auto_H5T.o Wrapper_auto_H5Z.o Wrapper_auto_H5FDcore.o Wrapper_auto_H5FDfamily.o Wrapper_auto_H5FDlog.o Wrapper_auto_H5FDsec2.o Wrapper_auto_H5FDstdio.o convert.o hdf5r_init.o H5Error.o H5ls.o Wrapper_manual_H5T.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -L. -lhdf5_hl -lhdf5 -lz -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2BA2p3/R.INSTALL4be0227024787/hdf5r/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-hdf5r/00new/hdf5r/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location /home/hornik/src/R/src/main/dotcode.c:760:11: runtime error: call to function R_bit_set_attr through pointer to incorrect function type 'struct SEXPREC *(*)(struct SEXPREC *, struct SEXPREC *, struct SEXPREC *)' /home/hornik/tmp/scratch/RtmpWU2908/R.INSTALL47c0445af35c3/bit/src/attrutil.c:5: note: R_bit_set_attr defined here #0 0x7f249fba1d40 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:760:11 #1 0x7f249fd229d1 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8672:21 #2 0x7f249fcaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #3 0x7f249fca921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #4 0x7f249fcb3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #5 0x7f249fcaf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #6 0x7f249fcad690 in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #7 0x7f249fe4dfa7 in dispatchMethod /home/hornik/src/R/src/main/objects.c:473:16 #8 0x7f249fe4c303 in Rf_usemethod /home/hornik/src/R/src/main/objects.c:513:10 #9 0x7f249fd4de26 in tryDispatch /home/hornik/src/R/src/main/eval.c:6073:7 #10 0x7f249fcf1d8b in bcEval_loop /home/hornik/src/R/src/main/eval.c:8657:27 #11 0x7f249fcaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #12 0x7f249fca921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #13 0x7f249fcb3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #14 0x7f249fcaf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #15 0x7f249fcad690 in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #16 0x7f249fe4dfa7 in dispatchMethod /home/hornik/src/R/src/main/objects.c:473:16 #17 0x7f249fe4c303 in Rf_usemethod /home/hornik/src/R/src/main/objects.c:513:10 #18 0x7f249fd4de26 in tryDispatch /home/hornik/src/R/src/main/eval.c:6073:7 #19 0x7f249fcf73ca in bcEval_loop /home/hornik/src/R/src/main/eval.c:8268:25 #20 0x7f249fcaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #21 0x7f249fca921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #22 0x7f249fcb3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #23 0x7f249fcaf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #24 0x7f249fca9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #25 0x7f249fca9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #26 0x7f249fdf4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #27 0x7f249fdf7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #28 0x7f249fdf7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #29 0x7f249fdf783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #30 0x561c4e9d4b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #31 0x7f249f033d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #32 0x7f249f033e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #33 0x561c4e8f9360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:760:11 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location /home/hornik/src/R/src/main/dotcode.c:760:11: runtime error: call to function R_bit_set_attr through pointer to incorrect function type 'struct SEXPREC *(*)(struct SEXPREC *, struct SEXPREC *, struct SEXPREC *)' /home/hornik/tmp/scratch/RtmpWU2908/R.INSTALL47c0445af35c3/bit/src/attrutil.c:5: note: R_bit_set_attr defined here #0 0x7fdc96fa1d40 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:760:11 #1 0x7fdc971229d1 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8672:21 #2 0x7fdc970aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #3 0x7fdc970a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #4 0x7fdc970b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #5 0x7fdc970af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #6 0x7fdc970ad690 in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #7 0x7fdc9724dfa7 in dispatchMethod /home/hornik/src/R/src/main/objects.c:473:16 #8 0x7fdc9724c303 in Rf_usemethod /home/hornik/src/R/src/main/objects.c:513:10 #9 0x7fdc9714de26 in tryDispatch /home/hornik/src/R/src/main/eval.c:6073:7 #10 0x7fdc970f1d8b in bcEval_loop /home/hornik/src/R/src/main/eval.c:8657:27 #11 0x7fdc970aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #12 0x7fdc970a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #13 0x7fdc970b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #14 0x7fdc970af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #15 0x7fdc970ad690 in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #16 0x7fdc9724dfa7 in dispatchMethod /home/hornik/src/R/src/main/objects.c:473:16 #17 0x7fdc9724c303 in Rf_usemethod /home/hornik/src/R/src/main/objects.c:513:10 #18 0x7fdc9714de26 in tryDispatch /home/hornik/src/R/src/main/eval.c:6073:7 #19 0x7fdc970f73ca in bcEval_loop /home/hornik/src/R/src/main/eval.c:8268:25 #20 0x7fdc970aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #21 0x7fdc970a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #22 0x7fdc970b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #23 0x7fdc970af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #24 0x7fdc970a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #25 0x7fdc970a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #26 0x7fdc971f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #27 0x7fdc971f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #28 0x7fdc971f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #29 0x7fdc971f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #30 0x562a663d9b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #31 0x7fdc96433d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #32 0x7fdc96433e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #33 0x562a662fe360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:760:11 ** testing if installed package keeps a record of temporary installation path * DONE (hdf5r) * installing *source* package ‘UCSC.utils’ ... ** package ‘UCSC.utils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (UCSC.utils) * installing *source* package ‘tidyselect’ ... ** package ‘tidyselect’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidyselect) * installing *source* package ‘spam’ ... ** package ‘spam’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using Fortran compiler: ‘Debian flang-new version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWzncNe/R.INSTALL4c570614268d9/spam/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o flang-new-18 -fpic -g -O2 -c bckslvmodified.f -o bckslvmodified.o flang-new-18 -fpic -g -O2 -c cholmodified.f -o cholmodified.o ./cholmodified.f:377:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^ ./cholmodified.f:942:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^^^^^^^^^^^ ./cholmodified.f:1035:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^^^^^^^^^^^ ./cholmodified.f:1125:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^^^^^^^^^^^ ./cholmodified.f:1151:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^^^^^^^^^^^ ./cholmodified.f:2748:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^ ./cholmodified.f:3765:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^^^ ./cholmodified.f:4301:2: warning: Compiler directive was ignored CDIR$ IVDEP ^^^^^^^^^^^^ flang-new-18 -fpic -g -O2 -c dgetv0.f -o dgetv0.o flang-new-18 -fpic -g -O2 -c dist.f -o dist.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c distCpp.cpp -o distCpp.o flang-new-18 -fpic -g -O2 -c dn_ARPACK.f -o dn_ARPACK.o ./dn_ARPACK.f:2951:11: warning: Reference to the procedure 'dgemv' has an implicit interface that is distinct from another reference: incompatible dummy argument #5: incompatible dummy data object shapes & call dgemv ('N', n, kplusp, one, v, ldv, q(1,kev+1), 1, zero, ^ ./dn_ARPACK.f:804:13: previous reference to 'dgemv' call dgemv ('T', ncv, nconv, one, workl(invsub), ^ ./dn_ARPACK.f:2960:10: warning: Reference to the procedure 'dgemv' has an implicit interface that is distinct from another reference: incompatible dummy argument #5: incompatible dummy data object shapes call dgemv ('N', n, kplusp-i+1, one, v, ldv, ^ ./dn_ARPACK.f:804:13: previous reference to 'dgemv' call dgemv ('T', ncv, nconv, one, workl(invsub), ^ ./dn_ARPACK.f:3733:7: warning: Reference to the procedure 'dgemv' has an implicit interface that is distinct from another reference: incompatible dummy argument #5: incompatible dummy data object shapes call dgemv('T', n, n, one, q, ldq, bounds(1), 1, zero, ^ ./dn_ARPACK.f:804:13: previous reference to 'dgemv' call dgemv ('T', ncv, nconv, one, workl(invsub), ^ flang-new-18 -fpic -g -O2 -c dn_eigen.f -o dn_eigen.o flang-new-18 -fpic -g -O2 -c ds_ARPACK.f -o ds_ARPACK.o flang-new-18 -fpic -g -O2 -c ds_eigen.f -o ds_eigen.o flang-new-18 -fpic -g -O2 -c fromsparsekit.f -o fromsparsekit.o flang-new-18 -fpic -g -O2 -c gmult.f -o gmult.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o flang-new-18 -fpic -g -O2 -c kronecker.f -o kronecker.o flang-new-18 -fpic -g -O2 -c permutation.f -o permutation.o flang-new-18 -fpic -g -O2 -c rowcolstats.f -o rowcolstats.o flang-new-18 -fpic -g -O2 -c spamown.f -o spamown.o flang-new-18 -fpic -g -O2 -c spamown2.f -o spamown2.o flang-new-18 -fpic -g -O2 -c xybind.f -o xybind.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o spam.so RcppExports.o bckslvmodified.o cholmodified.o dgetv0.o dist.o distCpp.o dn_ARPACK.o dn_eigen.o ds_ARPACK.o ds_eigen.o fromsparsekit.o gmult.o init.o kronecker.o permutation.o rowcolstats.o spamown.o spamown2.o xybind.o -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWzncNe/R.INSTALL4c570614268d9/spam/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-spam/00new/spam/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘diag’ from package ‘base’ in package ‘spam’ Creating a generic function for ‘diag<-’ from package ‘base’ in package ‘spam’ Creating a generic function for ‘norm’ from package ‘base’ in package ‘spam’ Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘spam’ Creating a generic function for ‘colSums’ from package ‘base’ in package ‘spam’ Creating a generic function for ‘rowMeans’ from package ‘base’ in package ‘spam’ Creating a generic function for ‘colMeans’ from package ‘base’ in package ‘spam’ Creating a new generic function for ‘backsolve’ in package ‘spam’ Creating a new generic function for ‘forwardsolve’ in package ‘spam’ Creating a generic function for ‘chol2inv’ from ‘base’ in package ‘spam’ (from the saved implicit definition) Creating a generic function for ‘chol2inv’ from package ‘base’ in package ‘spam’ Creating a generic function for ‘rbind’ from package ‘base’ in package ‘spam’ Creating a generic function for ‘cbind’ from package ‘base’ in package ‘spam’ ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spam) * installing *source* package ‘stringi’ ... ** package ‘stringi’ successfully unpacked and MD5 sums checked ** using staged installation checking for R_HOME... /home/hornik/tmp/R-d-clang-xtra checking for R... /home/hornik/tmp/R-d-clang-xtra/bin/R checking for endianness... little checking for cat... /usr/bin/cat checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 accepts -g... yes checking for clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 option to enable C++11 features... none needed checking whether the C++ compiler supports the 'long long' type... yes checking whether the compiler implements namespaces... yes checking whether the compiler supports the Standard Template Library... yes checking whether std::map is available... yes checking for pkg-config... /usr/bin/pkg-config checking with 'pkg-config' for the system ICU4C (icu-i18n icu-uc)... 72.1 checking for ICU4C >= 61... yes checking for additional CPPFLAGS, LDFLAGS, and LIBS required... done checking whether an ICU4C-based project can be built... yes checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes checking the capabilities of the ICU data library (ucnv, uloc, utrans)... yes checking the capabilities of the ICU data library (ucol)... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for elf.h... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/uconfig_local.h config.status: creating src/install.libs.R *** stringi configure summary: ICU_FOUND=1 STRINGI_CXXSTD= STRINGI_CXXFLAGS= -fpic STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H STRINGI_LDFLAGS= -L/usr/lib/x86_64-linux-gnu STRINGI_LIBS= -licui18n -licuuc -licudata *** Compiler settings used: CXX=clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 LD=clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 CXXFLAGS=-g -O3 -Wall -pedantic CPPFLAGS=-I/usr/local/include LDFLAGS= LIBS= ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUd8bA6/R.INSTALL46f717285122e/stringi/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_brkiter.cpp -o stri_brkiter.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_collator.cpp -o stri_collator.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_common.cpp -o stri_common.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_compare.cpp -o stri_compare.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_container_base.cpp -o stri_container_base.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_container_listint.cpp -o stri_container_listint.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_container_listraw.cpp -o stri_container_listraw.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_container_listutf8.cpp -o stri_container_listutf8.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_container_regex.cpp -o stri_container_regex.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_container_usearch.cpp -o stri_container_usearch.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_container_utf16.cpp -o stri_container_utf16.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_container_utf8.cpp -o stri_container_utf8.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_encoding_detection.cpp -o stri_encoding_detection.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_encoding_management.cpp -o stri_encoding_management.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_escape.cpp -o stri_escape.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_exception.cpp -o stri_exception.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_ICU_settings.cpp -o stri_ICU_settings.o In file included from stri_ICU_settings.cpp:37: ./uconfig_local.h:42:9: warning: 'UCONFIG_USE_WINDOWS_LCID_MAPPING_API' macro redefined [-Wmacro-redefined] 42 | #define UCONFIG_USE_WINDOWS_LCID_MAPPING_API 0 | ^ /usr/include/unicode/uconfig.h:381:12: note: previous definition is here 381 | # define UCONFIG_USE_WINDOWS_LCID_MAPPING_API 1 | ^ 1 warning generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_join.cpp -o stri_join.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_length.cpp -o stri_length.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_pad.cpp -o stri_pad.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_prepare_arg.cpp -o stri_prepare_arg.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_random.cpp -o stri_random.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_reverse.cpp -o stri_reverse.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_class_count.cpp -o stri_search_class_count.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_class_detect.cpp -o stri_search_class_detect.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_class_extract.cpp -o stri_search_class_extract.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_class_locate.cpp -o stri_search_class_locate.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_class_replace.cpp -o stri_search_class_replace.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_class_split.cpp -o stri_search_class_split.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_class_subset.cpp -o stri_search_class_subset.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_class_trim.cpp -o stri_search_class_trim.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_common.cpp -o stri_search_common.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_coll_count.cpp -o stri_search_coll_count.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_coll_split.cpp -o stri_search_coll_split.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_in.cpp -o stri_search_in.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_other_split.cpp -o stri_search_other_split.o stri_search_other_split.cpp:202:24: warning: variable 'k' set but not used [-Wunused-but-set-variable] 202 | R_len_t jlast, k=1; | ^ 1 warning generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_regex_count.cpp -o stri_search_regex_count.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_regex_match.cpp -o stri_search_regex_match.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_regex_split.cpp -o stri_search_regex_split.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_sort.cpp -o stri_sort.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_sprintf.cpp -o stri_sprintf.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_stats.cpp -o stri_stats.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_string8.cpp -o stri_string8.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_stringi.cpp -o stri_stringi.o In file included from stri_stringi.cpp:39: ./uconfig_local.h:42:9: warning: 'UCONFIG_USE_WINDOWS_LCID_MAPPING_API' macro redefined [-Wmacro-redefined] 42 | #define UCONFIG_USE_WINDOWS_LCID_MAPPING_API 0 | ^ /usr/include/unicode/uconfig.h:381:12: note: previous definition is here 381 | # define UCONFIG_USE_WINDOWS_LCID_MAPPING_API 1 | ^ 1 warning generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_sub.cpp -o stri_sub.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_test.cpp -o stri_test.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_time_zone.cpp -o stri_time_zone.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_time_calendar.cpp -o stri_time_calendar.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_time_symbols.cpp -o stri_time_symbols.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_time_format.cpp -o stri_time_format.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_trans_casemap.cpp -o stri_trans_casemap.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_trans_other.cpp -o stri_trans_other.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_trans_normalization.cpp -o stri_trans_normalization.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_ucnv.cpp -o stri_ucnv.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_uloc.cpp -o stri_uloc.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_utils.cpp -o stri_utils.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -c stri_wrap.cpp -o stri_wrap.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_sprintf.o stri_stats.o stri_string8.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUd8bA6/R.INSTALL46f717285122e/stringi/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-stringi/00new/stringi ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stringi) begin installing package ‘stringr’ * installing *source* package ‘purrr’ ... ** package ‘purrr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPqydsU/R.INSTALL4d8ee5f4516ac/purrr/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c backports.c -o backports.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c coerce.c -o coerce.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c conditions.c -o conditions.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c flatten.c -o flatten.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c map.c -o map.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c pluck.c -o pluck.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c transpose.c -o transpose.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o purrr.so backports.o cleancall.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPqydsU/R.INSTALL4d8ee5f4516ac/purrr/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-purrr/00new/purrr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (purrr) * installing *source* package ‘pillar’ ... ** package ‘pillar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pillar) begin installing package ‘tibble’ * installing *source* package ‘RcppEigen’ ... ** package ‘RcppEigen’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxEfu0j/R.INSTALL4c58737050b8a/RcppEigen/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c RcppEigen.cpp -o RcppEigen.o In file included from RcppEigen.cpp:22: In file included from ../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:29: In file included from ../inst/include/Eigen/Sparse:26: In file included from ../inst/include/Eigen/SparseCore:61: ../inst/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppEigen.cpp:22: In file included from ../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:29: In file included from ../inst/include/Eigen/Sparse:29: In file included from ../inst/include/Eigen/SparseLU:35: ../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ ../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppEigen.cpp:22: In file included from ../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:31: In file included from ../inst/include/unsupported/Eigen/IterativeSolvers:46: ../inst/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppEigen.cpp:22: In file included from ../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:37: In file included from ../inst/include/unsupported/Eigen/SparseExtra:45: ../inst/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from ./../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:29: In file included from ../inst/include/Eigen/Sparse:26: In file included from ../inst/include/Eigen/SparseCore:61: ../inst/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:29: In file included from ../inst/include/Eigen/Sparse:29: In file included from ../inst/include/Eigen/SparseLU:35: ../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ ../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:31: In file included from ../inst/include/unsupported/Eigen/IterativeSolvers:46: ../inst/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:37: In file included from ../inst/include/unsupported/Eigen/SparseExtra:45: ../inst/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c fastLm.cpp -o fastLm.o In file included from fastLm.cpp:23: In file included from ./fastLm.h:25: In file included from ../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:29: In file included from ../inst/include/Eigen/Sparse:26: In file included from ../inst/include/Eigen/SparseCore:61: ../inst/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from fastLm.cpp:23: In file included from ./fastLm.h:25: In file included from ../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:29: In file included from ../inst/include/Eigen/Sparse:29: In file included from ../inst/include/Eigen/SparseLU:35: ../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ ../inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from fastLm.cpp:23: In file included from ./fastLm.h:25: In file included from ../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:31: In file included from ../inst/include/unsupported/Eigen/IterativeSolvers:46: ../inst/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from fastLm.cpp:23: In file included from ./fastLm.h:25: In file included from ../inst/include/RcppEigen.h:25: In file included from ../inst/include/RcppEigenForward.h:37: In file included from ../inst/include/unsupported/Eigen/SparseExtra:45: ../inst/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o RcppEigen.so RcppEigen.o RcppExports.o fastLm.o -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxEfu0j/R.INSTALL4c58737050b8a/RcppEigen/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-RcppEigen/00new/RcppEigen/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppEigen) begin installing package ‘RSpectra’ begin installing package ‘SeuratObject’ * installing *source* package ‘reticulate’ ... ** package ‘reticulate’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7igtTn/R.INSTALL4d12415212cef/reticulate/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c event_loop.cpp -o event_loop.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libpython.cpp -o libpython.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c output.cpp -o output.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pending_py_calls_notifier.cpp -o pending_py_calls_notifier.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c python.cpp -o python.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c readline.cpp -o readline.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c signals.cpp -o signals.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o reticulate.so RcppExports.o event_loop.o libpython.o output.o pending_py_calls_notifier.o python.o readline.o signals.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7igtTn/R.INSTALL4d12415212cef/reticulate/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-reticulate/00new/reticulate/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reticulate) * installing *source* package ‘stringr’ ... ** package ‘stringr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stringr) begin installing package ‘reshape2’ * installing *source* package ‘tibble’ ... ** package ‘tibble’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphcHxsb/R.INSTALL4de914c93699f/tibble/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c attributes.c -o attributes.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c coerce.c -o coerce.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c matrixToDataFrame.c -o matrixToDataFrame.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphcHxsb/R.INSTALL4de914c93699f/tibble/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-tibble/00new/tibble/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tibble) begin installing package ‘dplyr’ begin installing package ‘fastDummies’ begin installing package ‘ggplot2’ * installing *source* package ‘fastDummies’ ... ** package ‘fastDummies’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastDummies) * installing *source* package ‘spatstat.geom’ ... ** package ‘spatstat.geom’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXy1IXB/R.INSTALL4ac1839879b8b/spatstat.geom/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c areadiff.c -o areadiff.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c auctionbf.c -o auctionbf.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bdrymask.c -o bdrymask.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c close3pair.c -o close3pair.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c closepair.c -o closepair.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c connectgraph.c -o connectgraph.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c connectpix.c -o connectpix.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dinfty.c -o dinfty.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c discarea.c -o discarea.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c discs.c -o discs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dist2dpath.c -o dist2dpath.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c distan3.c -o distan3.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c distances.c -o distances.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c distmapbin.c -o distmapbin.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dwpure.c -o dwpure.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c exactPdist.c -o exactPdist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c exactdist.c -o exactdist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fardist.c -o fardist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hasclose.c -o hasclose.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c knndistance.c -o knndistance.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c knngrid.c -o knngrid.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c loccum.c -o loccum.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c metricPdist.c -o metricPdist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c minnnd.c -o minnnd.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c nearestpix.c -o nearestpix.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c nn3Ddist.c -o nn3Ddist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c nnMDdist.c -o nnMDdist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c nndistance.c -o nndistance.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c nngrid.c -o nngrid.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c periodic.c -o periodic.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c poly2im.c -o poly2im.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c quasirandom.c -o quasirandom.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c raster.c -o raster.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rasterfilter.c -o rasterfilter.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c scan.c -o scan.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c seg2pix.c -o seg2pix.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c trigraf.c -o trigraf.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c uniquemap.c -o uniquemap.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c veegraf.c -o veegraf.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c xyseg.c -o xyseg.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o spatstat.geom.so areadiff.o auctionbf.o bdrymask.o close3pair.o closepair.o connectgraph.o connectpix.o dinfty.o discarea.o discs.o dist2dpath.o distan3.o distances.o distmapbin.o dwpure.o exactPdist.o exactdist.o fardist.o hasclose.o init.o knndistance.o knngrid.o loccum.o metricPdist.o minnnd.o nearestpix.o nn3Ddist.o nnMDdist.o nndistance.o nngrid.o periodic.o poly2im.o quasirandom.o raster.o rasterfilter.o scan.o seg2pix.o trigraf.o uniquemap.o veegraf.o xyseg.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXy1IXB/R.INSTALL4ac1839879b8b/spatstat.geom/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-spatstat.geom/00new/spatstat.geom/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spatstat.geom) begin installing package ‘spatstat.random’ * installing *source* package ‘reshape2’ ... ** package ‘reshape2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfWhjNL/R.INSTALL4e05e63abed8a/reshape2/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c melt.cpp -o melt.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o reshape2.so RcppExports.o melt.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfWhjNL/R.INSTALL4e05e63abed8a/reshape2/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-reshape2/00new/reshape2/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reshape2) * installing *source* package ‘testthat’ ... ** package ‘testthat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp10ZYO5/R.INSTALL4cf2b4e171ff3/testthat/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c reassign.c -o reassign.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-catch.cpp -o test-catch.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-example.cpp -o test-example.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-runner.cpp -o test-runner.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp10ZYO5/R.INSTALL4cf2b4e171ff3/testthat/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-testthat/00new/testthat/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (testthat) * installing *source* package ‘dplyr’ ... ** package ‘dplyr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKsl81d/R.INSTALL4e374752f737a/dplyr/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c chop.cpp -o chop.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c filter.cpp -o filter.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c funs.cpp -o funs.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c group_by.cpp -o group_by.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c group_data.cpp -o group_data.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c imports.cpp -o imports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.cpp -o init.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mask.cpp -o mask.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mutate.cpp -o mutate.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c reconstruct.cpp -o reconstruct.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c slice.cpp -o slice.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c summarise.cpp -o summarise.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o reconstruct.o slice.o summarise.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKsl81d/R.INSTALL4e374752f737a/dplyr/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-dplyr/00new/dplyr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dplyr) begin installing package ‘tidyr’ * installing *source* package ‘httpuv’ ... ** package ‘httpuv’ successfully unpacked and MD5 sums checked ** using staged installation ** Using libuv found by pkg-config in /usr ** PKG_CFLAGS= ** PKG_LIBS=-luv -lpthread -ldl -lrt ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGxEzfa/R.INSTALL4d6e07bb1e656/httpuv/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c callback.cpp -o callback.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c callbackqueue.cpp -o callbackqueue.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c filedatasource-unix.cpp -o filedatasource-unix.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c filedatasource-win.cpp -o filedatasource-win.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c fs.cpp -o fs.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c gzipdatasource.cpp -o gzipdatasource.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c http.cpp -o http.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c httprequest.cpp -o httprequest.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c httpresponse.cpp -o httpresponse.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c httpuv.cpp -o httpuv.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c mime.cpp -o mime.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c socket.cpp -o socket.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c staticpath.cpp -o staticpath.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c thread.cpp -o thread.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c timegm.cpp -o timegm.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c utils.cpp -o utils.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c uvutil.cpp -o uvutil.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c webapplication.cpp -o webapplication.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-base.cpp -o websockets-base.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-hixie76.cpp -o websockets-hixie76.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-hybi03.cpp -o websockets-hybi03.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-ietf.cpp -o websockets-ietf.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets.cpp -o websockets.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c winutils.cpp -o winutils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c http-parser/http_parser.c -o http-parser/http_parser.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c sha1/sha1.c -o sha1/sha1.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c base64/base64.cpp -o base64/base64.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o httpuv.so RcppExports.o callback.o callbackqueue.o filedatasource-unix.o filedatasource-win.o fs.o gzipdatasource.o http.o httprequest.o httpresponse.o httpuv.o md5.o mime.o socket.o staticpath.o thread.o timegm.o utils.o uvutil.o webapplication.o websockets-base.o websockets-hixie76.o websockets-hybi03.o websockets-ietf.o websockets.o winutils.o -luv -lpthread -ldl -lrt ./http-parser/http_parser.o ./sha1/sha1.o ./base64/base64.o -pthread -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGxEzfa/R.INSTALL4d6e07bb1e656/httpuv/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-httpuv/00new/httpuv/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httpuv) * installing *source* package ‘tidyr’ ... ** package ‘tidyr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmppE4ZmC/R.INSTALL4ea83451d4b5c/tidyr/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cpp11.cpp -o cpp11.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c melt.cpp -o melt.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c simplifyPieces.cpp -o simplifyPieces.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o tidyr.so cpp11.o melt.o simplifyPieces.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmppE4ZmC/R.INSTALL4ea83451d4b5c/tidyr/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-tidyr/00new/tidyr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidyr) * installing *source* package ‘ggplot2’ ... ** package ‘ggplot2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggplot2) begin installing package ‘cowplot’ begin installing package ‘ggrepel’ begin installing package ‘ggridges’ begin installing package ‘patchwork’ begin installing package ‘scattermore’ begin installing package ‘sctransform’ * installing *source* package ‘SeuratObject’ ... ** package ‘SeuratObject’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkaJwMD/R.INSTALL4df9ecc7badc/SeuratObject/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c data_manipulation.cpp -o data_manipulation.o In file included from data_manipulation.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from data_manipulation.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from data_manipulation.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from data_manipulation.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c valid_pointer.c -o valid_pointer.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o SeuratObject.so RcppExports.o data_manipulation.o valid_pointer.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkaJwMD/R.INSTALL4df9ecc7badc/SeuratObject/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-SeuratObject/00new/SeuratObject/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SeuratObject) * installing *source* package ‘spatstat.random’ ... ** package ‘spatstat.random’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpr40FCs/R.INSTALL4e5817d277259/spatstat.random/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Perfect.cc -o Perfect.o Perfect.cc:659:31: warning: variable 'i' set but not used [-Wunused-but-set-variable] 659 | long int XCell, YCell, DDD, i; | ^ 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c areaint.c -o areaint.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c badgey.c -o badgey.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dgs.c -o dgs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diggra.c -o diggra.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dist2.c -o dist2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fiksel.c -o fiksel.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c getcif.c -o getcif.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c geyer.c -o geyer.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hardcore.c -o hardcore.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lennard.c -o lennard.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lookup.c -o lookup.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c methas.c -o methas.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mhsnoop.c -o mhsnoop.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c multihard.c -o multihard.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c penttinen.c -o penttinen.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcauchy.c -o rcauchy.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rmatclus.c -o rmatclus.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rthin.c -o rthin.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rthomas.c -o rthomas.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rtruncpois.c -o rtruncpois.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sftcr.c -o sftcr.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c straush.c -o straush.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c straushm.c -o straushm.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c strauss.c -o strauss.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c straussm.c -o straussm.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c triplets.c -o triplets.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o spatstat.random.so Perfect.o areaint.o badgey.o dgs.o diggra.o dist2.o fiksel.o getcif.o geyer.o hardcore.o init.o lennard.o lookup.o methas.o mhsnoop.o multihard.o penttinen.o rcauchy.o rmatclus.o rthin.o rthomas.o rtruncpois.o sftcr.o straush.o straushm.o strauss.o straussm.o triplets.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpr40FCs/R.INSTALL4e5817d277259/spatstat.random/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-spatstat.random/00new/spatstat.random/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spatstat.random) begin installing package ‘spatstat.explore’ * installing *source* package ‘scattermore’ ... ** package ‘scattermore’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjFxbFn/R.INSTALL4ef0229c7bff3/scattermore/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c histogram_to_rgbwt.cpp -o histogram_to_rgbwt.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kernel_histogram.cpp -o kernel_histogram.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kernel_rgbwt.cpp -o kernel_rgbwt.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c scatter_histogram.cpp -o scatter_histogram.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c scatter_indexed_rgbwt.cpp -o scatter_indexed_rgbwt.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c scatter_lines_histogram.cpp -o scatter_lines_histogram.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c scatter_lines_rgbwt.cpp -o scatter_lines_rgbwt.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c scatter_multicolor_rgbwt.cpp -o scatter_multicolor_rgbwt.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c scatter_singlecolor_rgbwt.cpp -o scatter_singlecolor_rgbwt.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c scattermore.c -o scattermore.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o scattermore.so histogram_to_rgbwt.o kernel_histogram.o kernel_rgbwt.o scatter_histogram.o scatter_indexed_rgbwt.o scatter_lines_histogram.o scatter_lines_rgbwt.o scatter_multicolor_rgbwt.o scatter_singlecolor_rgbwt.o scattermore.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjFxbFn/R.INSTALL4ef0229c7bff3/scattermore/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-scattermore/00new/scattermore/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scattermore) * installing *source* package ‘cowplot’ ... ** package ‘cowplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cowplot) * installing *source* package ‘ggridges’ ... ** package ‘ggridges’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggridges) * installing *source* package ‘patchwork’ ... ** package ‘patchwork’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (patchwork) * installing *source* package ‘ggrepel’ ... ** package ‘ggrepel’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmppgwutU/R.INSTALL4ef0890fd2eb/ggrepel/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c repel_boxes.cpp -o repel_boxes.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o ggrepel.so RcppExports.o repel_boxes.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmppgwutU/R.INSTALL4ef0890fd2eb/ggrepel/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-ggrepel/00new/ggrepel/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggrepel) * installing *source* package ‘sctransform’ ... ** package ‘sctransform’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpT3Ul76/R.INSTALL4ef05438cdc26/sctransform/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.cpp -o utils.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o sctransform.so RcppExports.o utils.o -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpT3Ul76/R.INSTALL4ef05438cdc26/sctransform/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-sctransform/00new/sctransform/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sctransform) * installing *source* package ‘sass’ ... ** package ‘sass’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /home/hornik/tmp/R-d-clang-xtra/share/make/shlib.mk:18: warning: overriding recipe for target 'shlib-clean' Makevars:12: warning: ignoring old recipe for target 'shlib-clean' using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeOXOyl/R.INSTALL4cc0b7c4239ef/sass/src' /home/hornik/tmp/R-d-clang-xtra/share/make/shlib.mk:18: warning: overriding recipe for target 'shlib-clean' Makevars:12: warning: ignoring old recipe for target 'shlib-clean' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libsass/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c compile.c -o compile.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libsass/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.cpp -o init.o MAKEFLAGS= CC="clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer" CFLAGS="-g -O3 -Wall -pedantic" CXX="clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17" AR="ar" LDFLAGS="-Wl,-O1" make -C libsass make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpeOXOyl/R.INSTALL4cc0b7c4239ef/sass/src/libsass' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -O2 -I ./include -fPIC -c -o src/cencode.o src/cencode.c clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast.o src/ast.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_values.o src/ast_values.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_supports.o src/ast_supports.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_cmp.o src/ast_sel_cmp.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_unify.o src/ast_sel_unify.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_super.o src/ast_sel_super.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_weave.o src/ast_sel_weave.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_selectors.o src/ast_selectors.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/context.o src/context.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/constants.o src/constants.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_utils.o src/fn_utils.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_miscs.o src/fn_miscs.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_maps.o src/fn_maps.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_lists.o src/fn_lists.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_colors.o src/fn_colors.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_numbers.o src/fn_numbers.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_strings.o src/fn_strings.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_selectors.o src/fn_selectors.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/color_maps.o src/color_maps.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/environment.o src/environment.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_fwd_decl.o src/ast_fwd_decl.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/bind.o src/bind.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/file.o src/file.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/util.o src/util.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/util_string.o src/util_string.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/json.o src/json.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/units.o src/units.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/values.o src/values.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/plugins.o src/plugins.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/source.o src/source.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/position.o src/position.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/lexer.o src/lexer.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/parser.o src/parser.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/parser_selectors.o src/parser_selectors.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/prelexer.o src/prelexer.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/eval.o src/eval.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/eval_selectors.o src/eval_selectors.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/expand.o src/expand.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/listize.o src/listize.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/cssize.o src/cssize.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/extender.o src/extender.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/extension.o src/extension.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/stylesheet.o src/stylesheet.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/output.o src/output.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/inspect.o src/inspect.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/emitter.o src/emitter.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/check_nesting.o src/check_nesting.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/remove_placeholders.o src/remove_placeholders.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass.o src/sass.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_values.o src/sass_values.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_context.o src/sass_context.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_functions.o src/sass_functions.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass2scss.o src/sass2scss.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/backtrace.o src/backtrace.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/operators.o src/operators.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast2c.o src/ast2c.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/c2ast.o src/c2ast.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/to_value.o src/to_value.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/source_map.o src/source_map.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/error_handling.o src/error_handling.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/memory/allocator.o src/memory/allocator.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/memory/shared_ptr.o src/memory/shared_ptr.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/utf8_string.o src/utf8_string.cpp clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/base64vlq.o src/base64vlq.cpp mkdir lib ar rcvs lib/libsass.a src/cencode.o src/ast.o src/ast_values.o src/ast_supports.o src/ast_sel_cmp.o src/ast_sel_unify.o src/ast_sel_super.o src/ast_sel_weave.o src/ast_selectors.o src/context.o src/constants.o src/fn_utils.o src/fn_miscs.o src/fn_maps.o src/fn_lists.o src/fn_colors.o src/fn_numbers.o src/fn_strings.o src/fn_selectors.o src/color_maps.o src/environment.o src/ast_fwd_decl.o src/bind.o src/file.o src/util.o src/util_string.o src/json.o src/units.o src/values.o src/plugins.o src/source.o src/position.o src/lexer.o src/parser.o src/parser_selectors.o src/prelexer.o src/eval.o src/eval_selectors.o src/expand.o src/listize.o src/cssize.o src/extender.o src/extension.o src/stylesheet.o src/output.o src/inspect.o src/emitter.o src/check_nesting.o src/remove_placeholders.o src/sass.o src/sass_values.o src/sass_context.o src/sass_functions.o src/sass2scss.o src/backtrace.o src/operators.o src/ast2c.o src/c2ast.o src/to_value.o src/source_map.o src/error_handling.o src/memory/allocator.o src/memory/shared_ptr.o src/utf8_string.o src/base64vlq.o a - src/cencode.o a - src/ast.o a - src/ast_values.o a - src/ast_supports.o a - src/ast_sel_cmp.o a - src/ast_sel_unify.o a - src/ast_sel_super.o a - src/ast_sel_weave.o a - src/ast_selectors.o a - src/context.o a - src/constants.o a - src/fn_utils.o a - src/fn_miscs.o a - src/fn_maps.o a - src/fn_lists.o a - src/fn_colors.o a - src/fn_numbers.o a - src/fn_strings.o a - src/fn_selectors.o a - src/color_maps.o a - src/environment.o a - src/ast_fwd_decl.o a - src/bind.o a - src/file.o a - src/util.o a - src/util_string.o a - src/json.o a - src/units.o a - src/values.o a - src/plugins.o a - src/source.o a - src/position.o a - src/lexer.o a - src/parser.o a - src/parser_selectors.o a - src/prelexer.o a - src/eval.o a - src/eval_selectors.o a - src/expand.o a - src/listize.o a - src/cssize.o a - src/extender.o a - src/extension.o a - src/stylesheet.o a - src/output.o a - src/inspect.o a - src/emitter.o a - src/check_nesting.o a - src/remove_placeholders.o a - src/sass.o a - src/sass_values.o a - src/sass_context.o a - src/sass_functions.o a - src/sass2scss.o a - src/backtrace.o a - src/operators.o a - src/ast2c.o a - src/c2ast.o a - src/to_value.o a - src/source_map.o a - src/error_handling.o a - src/memory/allocator.o a - src/memory/shared_ptr.o a - src/utf8_string.o a - src/base64vlq.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpeOXOyl/R.INSTALL4cc0b7c4239ef/sass/src/libsass' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o sass.so compile.o init.o ./libsass/lib/libsass.a -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeOXOyl/R.INSTALL4cc0b7c4239ef/sass/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-sass/00new/sass/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sass) begin installing package ‘bslib’ * installing *source* package ‘IRanges’ ... ** package ‘IRanges’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZIp4qe/R.INSTALL4d6a7326dd14c/IRanges/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c CompressedAtomicList_utils.c -o CompressedAtomicList_utils.o In file included from CompressedAtomicList_utils.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c CompressedIRangesList_class.c -o CompressedIRangesList_class.o In file included from CompressedIRangesList_class.c:4: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c CompressedList_class.c -o CompressedList_class.o In file included from CompressedList_class.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Grouping_class.c -o Grouping_class.o In file included from Grouping_class.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c IPosRanges_comparison.c -o IPosRanges_comparison.o In file included from IPosRanges_comparison.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c IRanges_class.c -o IRanges_class.o In file included from IRanges_class.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c IRanges_constructor.c -o IRanges_constructor.o In file included from IRanges_constructor.c:4: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c NCList.c -o NCList.o In file included from NCList.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void NCList.c:114:56: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 114 | static NCListWalkingStackElt *pop_NCListWalkingStackElt() | ^ | void NCList.c:122:57: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 122 | static NCListWalkingStackElt *peek_NCListWalkingStackElt() | ^ | void NCList.c:127:40: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 127 | static void extend_NCList_walking_stack() | ^ | void NCList.c:172:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 172 | static const NCList *move_to_right_uncle() | ^ | void NCList.c:225:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 225 | static const NCList *next_bottom_up() | ^ | void NCList.c:356:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 356 | SEXP C_new_NCList() | ^ | void NCList.c:446:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 446 | static void extend_NCList_building_stack() | ^ | void NCList.c:202:22: warning: unused function 'next_top_down' [-Wunused-function] 202 | static const NCList *next_top_down(const NCList *nclist) | ^~~~~~~~~~~~~ NCList.c:1173:13: warning: function 'NCList_get_y_overlaps_rec' is not needed and will not be emitted [-Wunneeded-internal-declaration] 1173 | static void NCList_get_y_overlaps_rec(const NCList *x_nclist, | ^~~~~~~~~~~~~~~~~~~~~~~~~ 10 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_IRanges.c -o R_init_IRanges.o In file included from R_init_IRanges.c:1: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Ranges_class.c -o Ranges_class.o In file included from Ranges_class.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RleViews_utils.c -o RleViews_utils.o In file included from RleViews_utils.c:1: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SimpleIRangesList_class.c -o SimpleIRangesList_class.o In file included from SimpleIRangesList_class.c:4: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c coverage_methods.c -o coverage_methods.o In file included from coverage_methods.c:11: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c extractListFragments.c -o extractListFragments.o In file included from extractListFragments.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c inter_range_methods.c -o inter_range_methods.o In file included from inter_range_methods.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o IRanges.so CompressedAtomicList_utils.o CompressedIRangesList_class.o CompressedList_class.o Grouping_class.o IPosRanges_comparison.o IRanges_class.o IRanges_constructor.o NCList.o R_init_IRanges.o Ranges_class.o RleViews_utils.o S4Vectors_stubs.o SimpleIRangesList_class.o coverage_methods.o extractListFragments.o inter_range_methods.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZIp4qe/R.INSTALL4d6a7326dd14c/IRanges/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-IRanges/00new/IRanges/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘drop’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘IRanges’ Creating a generic function for ‘chartr’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘toupper’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘tolower’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘sub’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘gsub’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘startsWith’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘endsWith’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘IRanges’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IRanges) begin installing package ‘S4Arrays’ begin installing package ‘GenomeInfoDb’ begin installing package ‘XVector’ * installing *source* package ‘bslib’ ... ** package ‘bslib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bslib) begin installing package ‘shiny’ begin installing package ‘rmarkdown’ * installing *source* package ‘GenomeInfoDb’ ... ** package ‘GenomeInfoDb’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomeInfoDb) * installing *source* package ‘XVector’ ... ** package ‘XVector’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c IRanges_stubs.c -o IRanges_stubs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Ocopy_byteblocks.c -o Ocopy_byteblocks.o In file included from Ocopy_byteblocks.c:1: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RDS_random_access.c -o RDS_random_access.o In file included from RDS_random_access.c:7: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void RDS_random_access.c:793:11: warning: variable 'x_type' set but not used [-Wunused-but-set-variable] 793 | SEXPTYPE x_type; | ^ RDS_random_access.c:796:18: warning: unused variable 'ans' [-Wunused-variable] 796 | SEXP subscript, ans; | ^~~ 3 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_XVector.c -o R_init_XVector.o In file included from R_init_XVector.c:1: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SharedDouble_class.c -o SharedDouble_class.o In file included from SharedDouble_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SharedInteger_class.c -o SharedInteger_class.o In file included from SharedInteger_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SharedRaw_class.c -o SharedRaw_class.o In file included from SharedRaw_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void SharedRaw_class.c:396:13: warning: variable 'src_tag' set but not used [-Wunused-but-set-variable] 396 | SEXP dest, src_tag; | ^ 2 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SharedVector_class.c -o SharedVector_class.o In file included from SharedVector_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void SharedVector_class.c:69:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 69 | SEXP externalptr_new() | ^ | void SharedVector_class.c:110:31: warning: format specifies type 'void *' but the argument has type 'SEXP' (aka 'struct SEXPREC *') [-Wformat-pedantic] 110 | Rprintf(" x address: %p\n", x); | ~~ ^ SharedVector_class.c:114:41: warning: format specifies type 'void *' but the argument has type 'SEXP' (aka 'struct SEXPREC *') [-Wformat-pedantic] 114 | Rprintf(" R_ExternalPtrTag(x): %p\n", s); | ~~ ^ SharedVector_class.c:118:47: warning: format specifies type 'void *' but the argument has type 'SEXP' (aka 'struct SEXPREC *') [-Wformat-pedantic] 118 | Rprintf(" R_ExternalPtrProtected(x): %p\n", s); | ~~ ^ 5 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XDouble_class.c -o XDouble_class.o In file included from XDouble_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XInteger_class.c -o XInteger_class.o In file included from XInteger_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XRawList_comparison.c -o XRawList_comparison.o In file included from XRawList_comparison.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XRaw_class.c -o XRaw_class.o In file included from XRaw_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XVectorList_class.c -o XVectorList_class.o In file included from XVectorList_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XVector_class.c -o XVector_class.o In file included from XVector_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c io_utils.c -o io_utils.o In file included from io_utils.c:7: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c slice_methods.c -o slice_methods.o In file included from slice_methods.c:1: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vector_copy.c -o vector_copy.o In file included from vector_copy.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c view_summarization_methods.c -o view_summarization_methods.o In file included from view_summarization_methods.c:1: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o XVector.so IRanges_stubs.o Ocopy_byteblocks.o RDS_random_access.o R_init_XVector.o S4Vectors_stubs.o SharedDouble_class.o SharedInteger_class.o SharedRaw_class.o SharedVector_class.o XDouble_class.o XInteger_class.o XRawList_comparison.o XRaw_class.o XVectorList_class.o XVector_class.o io_utils.o slice_methods.o vector_copy.o view_summarization_methods.o -lz -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-XVector/00new/XVector/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7fa5257a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7fa5257a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7fa525902616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7fa5258aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7fa5258a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7fa5258b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #6 0x7fa5258af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #7 0x7fa5258a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #8 0x7fa5258a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #9 0x7fa5259f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #10 0x7fa5259f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #11 0x7fa5259f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #12 0x7fa5259f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #13 0x560d33c5fb84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #14 0x7fa524b4dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #15 0x7fa524b4de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #16 0x560d33b84360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f35e35a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f35e35a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f35e3702616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f35e36aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f35e36a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f35e36b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #6 0x7f35e36af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #7 0x7f35e36a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #8 0x7f35e36a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #9 0x7f35e37f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #10 0x7f35e37f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #11 0x7f35e37f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #12 0x7f35e37f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #13 0x55928c7d5b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #14 0x7f35e2a33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #15 0x7f35e2a33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #16 0x55928c6fa360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** testing if installed package keeps a record of temporary installation path * DONE (XVector) begin installing package ‘GenomicRanges’ * installing *source* package ‘spatstat.explore’ ... ** package ‘spatstat.explore’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpmsc650/R.INSTALL4f0d95c96ec9c/spatstat.explore/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Kborder.c -o Kborder.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Knone.c -o Knone.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Krect.c -o Krect.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c call3d.c -o call3d.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c corrections.c -o corrections.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c denspt.c -o denspt.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c densptcross.c -o densptcross.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c digber.c -o digber.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c f3.c -o f3.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c g3.c -o g3.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c idw.c -o idw.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c k3.c -o k3.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c localpcf.c -o localpcf.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c loccum.c -o loccum.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pcf3.c -o pcf3.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c raster.c -o raster.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c scan.c -o scan.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c segdens.c -o segdens.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sphefrac.c -o sphefrac.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sphevol.c -o sphevol.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o spatstat.explore.so Kborder.o Knone.o Krect.o call3d.o corrections.o denspt.o densptcross.o digber.o f3.o g3.o idw.o init.o k3.o localpcf.o loccum.o pcf3.o raster.o scan.o segdens.o sphefrac.o sphevol.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpmsc650/R.INSTALL4f0d95c96ec9c/spatstat.explore/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-spatstat.explore/00new/spatstat.explore/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spatstat.explore) * installing *source* package ‘rmarkdown’ ... ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmarkdown) begin installing package ‘htmlwidgets’ * installing *source* package ‘S4Arrays’ ... ** package ‘S4Arrays’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6uDAxC/R.INSTALL4f3f676eda842/S4Arrays/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_S4Arrays.c -o R_init_S4Arrays.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c abind.c -o abind.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c array_selection.c -o array_selection.o array_selection.c:91:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 91 | static char *errmsg_buf() | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dim_tuning_utils.c -o dim_tuning_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowsum.c -o rowsum.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o S4Arrays.so R_init_S4Arrays.o S4Vectors_stubs.o abind.o array_selection.o dim_tuning_utils.o rowsum.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6uDAxC/R.INSTALL4f3f676eda842/S4Arrays/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-S4Arrays/00new/S4Arrays/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘rowsum’ in package ‘S4Arrays’ Creating a new generic function for ‘abind’ in package ‘S4Arrays’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (S4Arrays) begin installing package ‘SparseArray’ * installing *source* package ‘htmlwidgets’ ... ** package ‘htmlwidgets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (htmlwidgets) begin installing package ‘plotly’ * installing *source* package ‘Rhdf5lib’ ... ** package ‘Rhdf5lib’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... yes checking for clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to enable C11 features... none needed checking whether the compiler supports GNU C++... yes checking whether clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 accepts -g... yes checking for clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 option to enable C++11 features... none needed COMPILER = clang-18 checking whether C compiler accepts -w... yes checking whether to use -Wl,-rpath setting... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for zlib.h... yes ON_BUILDER=false ON_BUILDER=false checking for szlib.h... yes checking for libaec.h... yes checking for SZ_BufftoBuffCompress in -lsz... yes checking for aec_buffer_encode in -lsz... yes checking for curl/curl.h... yes checking for openssl/evp.h... yes checking for openssl/hmac.h... yes checking for openssl/sha.h... yes checking for curl_global_init in -lcurl... yes checking for EVP_sha256 in -lcrypto... yes S3_VFD=--enable-ros3-vfd configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src' gunzip -dc hdf5small_cxx_hl_1.10.7.tar.gz | tar xf -; cd hdf5; \ ./configure --with-pic --enable-shared=no --enable-cxx --enable-hl \ --enable-tests=no --enable-tools=no \ --with-szlib=yes --with-zlib=yes \ --enable-ros3-vfd \ --enable-sharedlib-rpath \ CC='clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer' CXX='clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17' \ CPPFLAGS='-I/usr/local/include' \ CFLAGS='-g -O3 -Wall -pedantic -w -fpic' \ CXXFLAGS='-w -g -O3 -Wall -pedantic -fpic' \ AR='ar' RANLIB='ranlib' \ LDFLAGS='-Wl,-O1'; \ make lib checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking shell variables initial values... done checking if basename works... yes checking if xargs works... yes checking for cached host... none checking for config x86_64-pc-linux-gnu... no checking for config x86_64-pc-linux-gnu... no checking for config pc-linux-gnu... no checking for config pc-linux-gnu... no checking for config x86_64-linux-gnu... no checking for config x86_64-linux-gnu... no checking for config x86_64-pc... no checking for config linux-gnu... found compiler 'clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer' is clang-18.1.8 compiler 'gfortran' is GNU gfortran-14.2.0 compiler 'clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17' is clang-18.1.8 checking for config ./config/site-specific/host-anduin2... no checking for clang sanitizer checks... checking build mode... production checking for gcc... clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... yes checking for clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to enable C11 features... none needed checking whether clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer... gcc3 checking if unsupported combinations of configure options are allowed... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for off_t... yes checking for size_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking whether byte ordering is bigendian... no checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of unsigned... 4 checking size of long... 8 checking size of long long... 8 checking size of __int64... 0 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of __float128... 16 checking size of _Quad... 0 checking for quadmath.h... no checking maximum decimal precision for C... 21 checking if Fortran interface enabled... no checking whether the compiler supports GNU C++... yes checking whether clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 accepts -g... yes checking for clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 option to enable C++11 features... none needed checking dependency style of clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17... gcc3 checking how to run the C++ preprocessor... clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -E checking if c++ interface enabled... yes checking if clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 needs old style header files in includes... no checking if clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 can handle namespaces... yes checking if clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 can handle static cast... yes checking if clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 has offsetof extension... yes checking if the high-level library is enabled... yes checking whether make sets $(MAKE)... (cached) yes checking for tr... /usr/bin/tr checking if srcdir= and time commands work together... yes checking if Java JNI interface enabled... no checking if building tests is disabled... Building HDF5 tests is disabled checking if building tools is disabled... Building HDF5 tools is disabled checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3145728 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer supports -fno-rtti -fno-exceptions... yes checking for clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to produce PIC... -fPIC -DPIC checking if clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer PIC flag -fPIC -DPIC works... yes checking if clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer static flag -static works... no checking if clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer supports -c -o file.o... yes checking if clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer supports -c -o file.o... (cached) yes checking whether the clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... yes checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking how to run the C++ preprocessor... clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -E checking for ld used by clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 option to produce PIC... -fPIC -DPIC checking if clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 PIC flag -fPIC -DPIC works... yes checking if clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 static flag -static works... no checking if clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 supports -c -o file.o... yes checking if clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 supports -c -o file.o... (cached) yes checking whether the clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if we should install only statically linked executables... no checking if -Wl,-rpath should be used to link shared libs in nondefault directories... yes checking for ceil in -lm... yes checking for dlopen in -ldl... yes checking for egrep... (cached) /usr/bin/grep -E checking for sys/resource.h... yes checking for sys/time.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/ioctl.h... yes checking for sys/stat.h... (cached) yes checking for sys/socket.h... yes checking for sys/types.h... (cached) yes checking for sys/file.h... yes checking for stddef.h... yes checking for setjmp.h... yes checking for features.h... yes checking for dirent.h... yes checking for stdint.h... (cached) yes checking for stdbool.h... yes checking for netdb.h... yes checking for netinet/in.h... yes checking for arpa/inet.h... yes checking for io.h... no checking for winsock2.h... no checking for sys/timeb.h... yes checking for _FILE_OFFSET_BITS value needed for large files... no checking size of int8_t... 1 checking size of uint8_t... 1 checking size of int_least8_t... 1 checking size of uint_least8_t... 1 checking size of int_fast8_t... 1 checking size of uint_fast8_t... 1 checking size of int16_t... 2 checking size of uint16_t... 2 checking size of int_least16_t... 2 checking size of uint_least16_t... 2 checking size of int_fast16_t... 8 checking size of uint_fast16_t... 8 checking size of int32_t... 4 checking size of uint32_t... 4 checking size of int_least32_t... 4 checking size of uint_least32_t... 4 checking size of int_fast32_t... 8 checking size of uint_fast32_t... 8 checking size of int64_t... 8 checking size of uint64_t... 8 checking size of int_least64_t... 8 checking size of uint_least64_t... 8 checking size of int_fast64_t... 8 checking size of uint_fast64_t... 8 checking size of size_t... 8 checking size of ssize_t... 8 checking size of ptrdiff_t... 8 checking size of off_t... 8 checking size of bool... 1 checking size of time_t... 8 checking if dev_t is scalar... yes checking for dmalloc library... suppressed checking for zlib.h... yes checking for compress2 in -lz... yes checking for compress2... yes checking for szlib.h... yes checking for libaec.h... yes checking for aec_encode in -laec... yes checking for SZ_BufftoBuffCompress in -lsz... yes checking for szlib encoder... no checking for thread safe support... no checking for clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer options needed to detect all undeclared functions... none needed checking whether CLOCK_MONOTONIC is declared... yes checking for tm_gmtoff in struct tm... yes checking for global timezone variable... yes checking for st_blocks in struct stat... no checking for _getvideoconfig... no checking for gettextinfo... no checking for GetConsoleScreenBufferInfo... no checking for getpwuid... yes checking for _scrsize... no checking for ioctl... yes checking for struct videoconfig... no checking for struct text_info... no checking for TIOCGWINSZ... yes checking for TIOCGETD... yes checking for library containing clock_gettime... none required checking for alarm... yes checking for clock_gettime... yes checking for difftime... yes checking for fcntl... yes checking for flock... yes checking for fork... yes checking for frexpf... yes checking for frexpl... yes checking for gethostname... yes checking for getrusage... yes checking for gettimeofday... yes checking for lstat... yes checking for rand_r... yes checking for random... yes checking for setsysinfo... no checking for signal... yes checking for longjmp... yes checking for setjmp... yes checking for siglongjmp... yes checking for sigsetjmp... no checking for sigprocmask... yes checking for snprintf... yes checking for srandom... yes checking for strdup... yes checking for symlink... yes checking for system... yes checking for strtoll... yes checking for strtoull... yes checking for tmpfile... yes checking for asprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for waitpid... yes checking for roundf... yes checking for lroundf... yes checking for llroundf... yes checking for round... yes checking for lround... yes checking for llround... yes checking for an ANSI C-conforming const... yes checking if the compiler understands __inline__... yes checking if the compiler understands __inline... yes checking if the compiler understands inline... yes checking for __attribute__ extension... yes checking for __func__ extension... yes checking for __FUNCTION__ extension... yes checking for C99 designated initialization support... yes checking how to print long long... %ld and %lu checking enable debugging symbols... no checking enable asserts... no checking enable developer warnings... no checking profiling... no checking optimization level... high checking enable file locking... best-effort checking for internal debug output... none checking whether function stack tracking is enabled... no checking for API tracing... no checking whether a memory checking tool will be used... no checking whether internal memory allocation sanity checking is used... no checking for parallel support files... skipped checking whether O_DIRECT is declared... yes checking for posix_memalign... yes checking if the direct I/O virtual file driver (VFD) is enabled... no checking if the Mirror virtual file driver (VFD) is enabled... no checking for curl/curl.h... yes checking for openssl/evp.h... yes checking for openssl/hmac.h... yes checking for openssl/sha.h... yes checking for curl_global_init in -lcurl... yes checking for EVP_sha256 in -lcrypto... yes checking if the Read-Only S3 virtual file driver (VFD) is enabled... yes checking for libhdfs... suppressed checking for custom examples path definition... ${prefix}/share/hdf5_examples checking for custom plugin default path definition... /usr/local/hdf5/lib/plugin checking whether exception handling functions is checked during data conversions... yes checking whether data accuracy is guaranteed during data conversions... yes checking if the machine has window style path name... no checking if using special algorithm to convert long double to (unsigned) long values... no checking if using special algorithm to convert (unsigned) long to long double values... no checking if correctly converting long double to (unsigned) long long values... yes checking if correctly converting (unsigned) long long to long double values... yes checking if the system is IBM ppc64le and cannot correctly convert some long double values... no checking additional programs should be built... no checking if deprecated public symbols are available... yes checking which version of public symbols to use by default... v110 checking whether to perform strict file format checks... no checking for pread... yes checking for pwrite... yes checking whether to use pread/pwrite instead of read/write in certain VFDs... yes checking whether to have library information embedded in the executables... yes checking if alignment restrictions are strictly enforced... no configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/libhdf5.settings config.status: creating Makefile config.status: creating src/Makefile config.status: creating utils/Makefile config.status: creating utils/mirror_vfd/Makefile config.status: creating bin/h5cc config.status: creating bin/Makefile config.status: creating c++/Makefile config.status: creating c++/src/Makefile config.status: creating c++/src/h5c++ config.status: creating hl/Makefile config.status: creating hl/src/Makefile config.status: creating hl/c++/Makefile config.status: creating hl/c++/src/Makefile config.status: creating src/H5config.h config.status: executing pubconf commands creating src/H5pubconf.h Post process src/libhdf5.settings config.status: executing depfiles commands config.status: executing libtool commands config.status: executing .classes commands SUMMARY OF THE HDF5 CONFIGURATION ================================= General Information: ------------------- HDF5 Version: 1.10.7 Configured on: Tue Dec 10 18:20:06 CET 2024 Configured by: hornik@anduin2 Host system: x86_64-pc-linux-gnu Uname information: Linux anduin2 6.11.10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1 (2024-11-23) x86_64 GNU/Linux Byte sex: little-endian Installation point: /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hdf5 Compiling Options: ------------------ Build Mode: production Debugging Symbols: no Asserts: no Profiling: no Optimization Level: high Linking Options: ---------------- Libraries: static Statically Linked Executables: LDFLAGS: -Wl,-O1 H5_LDFLAGS: AM_LDFLAGS: Extra libraries: -lcrypto -lcurl -lsz -laec -lz -ldl -lm Archiver: ar AR_FLAGS: cr Ranlib: ranlib Languages: ---------- C: yes C Compiler: /usr/bin/clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer ( 18.1.8) CPPFLAGS: -I/usr/local/include H5_CPPFLAGS: -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L -DNDEBUG -UH5_DEBUG_API AM_CPPFLAGS: C Flags: -g -O3 -Wall -pedantic -w -fpic H5 C Flags: -std=c99 -Warray-bounds -Wcast-qual -Wconversion -Wdouble-promotion -Wformat=2 -Wframe-larger-than=16384 -Wimplicit-fallthrough -Wno-c++-compat -Wno-format-nonliteral -Wnull-dereference -Wunused-const-variable -Wwrite-strings -Wvolatile-register-var -Wno-self-assign-overloaded -Wno-unknown-warning-option -Wno-missing-noreturn -O3 -Werror=bad-function-cast -Werror=implicit-function-declaration -Werror=incompatible-pointer-types -Werror=missing-declarations -Werror=packed -Werror=shadow -Werror=switch -Wno-error=incompatible-pointer-types-discards-qualifiers -Wunused-function -Wunused-variable -Wunused-parameter -Wcast-align -Wformat AM C Flags: Shared C Library: no Static C Library: yes Fortran: no C++: yes C++ Compiler: /usr/bin/clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 C++ Flags: -w -g -O3 -Wall -pedantic -fpic H5 C++ Flags: -std=c++11 -Warray-bounds -Wcast-qual -Wconversion -Wdouble-promotion -Wformat=2 -Wframe-larger-than=16384 -Wimplicit-fallthrough -Wno-c++-compat -Wno-format-nonliteral -Wnull-dereference -Wunused-const-variable -Wwrite-strings -Wvolatile-register-var -Wno-self-assign-overloaded -Wno-unknown-warning-option -O3 -Werror=bad-function-cast -Werror=implicit-function-declaration -Werror=incompatible-pointer-types -Werror=missing-declarations -Werror=packed -Werror=shadow -Werror=switch -Wno-error=incompatible-pointer-types-discards-qualifiers -Wunused-function -Wunused-variable -Wunused-parameter -Wcast-align -Wformat AM C++ Flags: Shared C++ Library: no Static C++ Library: yes Java: no Features: --------- Parallel HDF5: no Parallel Filtered Dataset Writes: no Large Parallel I/O: no High-level library: yes Build HDF5 Tests: no Build HDF5 Tools: no Threadsafety: no Default API mapping: v110 With deprecated public symbols: yes I/O filters (external): deflate(zlib),szip(no encoder) MPE: no Direct VFD: no Mirror VFD: no (Read-Only) S3 VFD: yes (Read-Only) HDFS VFD: no dmalloc: no Packages w/ extra debug output: none API tracing: no Using memory checker: no Memory allocation sanity checks: no Function stack tracing: no Use file locking: best-effort Strict file format checks: no Optimization instrumentation: no make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5' for d in src . c++ hl; do \ if test $d != .; then \ (cd $d && make lib) || exit 1; \ fi; \ done make[3]: Entering directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src' make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src' CC H5.lo CC H5checksum.lo CC H5dbg.lo CC H5system.lo CC H5timer.lo CC H5trace.lo CC H5A.lo CC H5Abtree2.lo CC H5Adense.lo CC H5Adeprec.lo CC H5Aint.lo CC H5Atest.lo CC H5AC.lo CC H5ACdbg.lo CC H5ACproxy_entry.lo CC H5B.lo CC H5Bcache.lo CC H5Bdbg.lo CC H5B2.lo CC H5B2cache.lo CC H5B2dbg.lo CC H5B2hdr.lo CC H5B2int.lo CC H5B2internal.lo CC H5B2leaf.lo CC H5B2stat.lo CC H5B2test.lo CC H5C.lo CC H5Cdbg.lo CC H5Cepoch.lo CC H5Cimage.lo CC H5Clog.lo CC H5Clog_json.lo CC H5Clog_trace.lo CC H5Cprefetched.lo CC H5Cquery.lo CC H5Ctag.lo CC H5Ctest.lo CC H5CS.lo CC H5CX.lo CC H5D.lo CC H5Dbtree.lo CC H5Dbtree2.lo CC H5Dchunk.lo CC H5Dcompact.lo CC H5Dcontig.lo CC H5Ddbg.lo CC H5Ddeprec.lo CC H5Dearray.lo CC H5Defl.lo CC H5Dfarray.lo CC H5Dfill.lo CC H5Dint.lo CC H5Dio.lo CC H5Dlayout.lo CC H5Dnone.lo CC H5Doh.lo CC H5Dscatgath.lo CC H5Dselect.lo CC H5Dsingle.lo CC H5Dtest.lo CC H5Dvirtual.lo CC H5E.lo CC H5Edeprec.lo CC H5Eint.lo CC H5EA.lo CC H5EAcache.lo CC H5EAdbg.lo CC H5EAdblkpage.lo CC H5EAdblock.lo CC H5EAhdr.lo CC H5EAiblock.lo CC H5EAint.lo CC H5EAsblock.lo CC H5EAstat.lo CC H5EAtest.lo CC H5F.lo CC H5Faccum.lo CC H5Fcwfs.lo CC H5Fdbg.lo CC H5Fdeprec.lo CC H5Fefc.lo CC H5Ffake.lo CC H5Fint.lo CC H5Fio.lo CC H5Fmount.lo CC H5Fquery.lo CC H5Fsfile.lo CC H5Fspace.lo CC H5Fsuper.lo CC H5Fsuper_cache.lo CC H5Ftest.lo CC H5FA.lo CC H5FAcache.lo CC H5FAdbg.lo CC H5FAdblock.lo CC H5FAdblkpage.lo CC H5FAhdr.lo CC H5FAint.lo CC H5FAstat.lo CC H5FAtest.lo CC H5FD.lo CC H5FDcore.lo CC H5FDfamily.lo CC H5FDhdfs.lo CC H5FDint.lo CC H5FDlog.lo CC H5FDmulti.lo CC H5FDsec2.lo CC H5FDspace.lo CC H5FDsplitter.lo CC H5FDstdio.lo CC H5FDtest.lo CC H5FL.lo CC H5FO.lo CC H5FS.lo CC H5FScache.lo CC H5FSdbg.lo CC H5FSint.lo CC H5FSsection.lo CC H5FSstat.lo CC H5FStest.lo CC H5G.lo CC H5Gbtree2.lo CC H5Gcache.lo CC H5Gcompact.lo CC H5Gdense.lo CC H5Gdeprec.lo CC H5Gent.lo CC H5Gint.lo CC H5Glink.lo CC H5Gloc.lo CC H5Gname.lo CC H5Gnode.lo CC H5Gobj.lo CC H5Goh.lo CC H5Groot.lo CC H5Gstab.lo CC H5Gtest.lo CC H5Gtraverse.lo CC H5HF.lo CC H5HFbtree2.lo CC H5HFcache.lo CC H5HFdbg.lo CC H5HFdblock.lo CC H5HFdtable.lo CC H5HFhdr.lo CC H5HFhuge.lo CC H5HFiblock.lo CC H5HFiter.lo CC H5HFman.lo CC H5HFsection.lo CC H5HFspace.lo CC H5HFstat.lo CC H5HFtest.lo CC H5HFtiny.lo CC H5HG.lo CC H5HGcache.lo CC H5HGdbg.lo CC H5HGquery.lo CC H5HL.lo CC H5HLcache.lo CC H5HLdbg.lo CC H5HLint.lo CC H5HLprfx.lo CC H5HLdblk.lo CC H5HP.lo CC H5I.lo CC H5Itest.lo CC H5L.lo CC H5Lexternal.lo CC H5make_libsettings.o CCLD H5make_libsettings LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo -Wl,-O1 | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5make_libsettings > H5lib_settings.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5lib_settings.c ; exit 1) CC H5lib_settings.lo CC H5MF.lo CC H5MFaggr.lo CC H5MFdbg.lo CC H5MFsection.lo CC H5MM.lo CC H5MP.lo CC H5MPtest.lo CC H5O.lo CC H5Odeprec.lo CC H5Oainfo.lo CC H5Oalloc.lo CC H5Oattr.lo CC H5Oattribute.lo CC H5Obogus.lo CC H5Obtreek.lo CC H5Ocache.lo CC H5Ocache_image.lo CC H5Ochunk.lo CC H5Ocont.lo CC H5Ocopy.lo CC H5Odbg.lo CC H5Odrvinfo.lo CC H5Odtype.lo CC H5Oefl.lo CC H5Ofill.lo CC H5Oflush.lo CC H5Ofsinfo.lo CC H5Oginfo.lo CC H5Oint.lo CC H5Olayout.lo CC H5Olinfo.lo CC H5Olink.lo CC H5Omessage.lo CC H5Omtime.lo CC H5Oname.lo CC H5Onull.lo CC H5Opline.lo CC H5Orefcount.lo CC H5Osdspace.lo CC H5Oshared.lo CC H5Oshmesg.lo CC H5Ostab.lo CC H5Otest.lo CC H5Ounknown.lo CC H5P.lo CC H5Pacpl.lo CC H5Pdapl.lo CC H5Pdcpl.lo CC H5Pdeprec.lo CC H5Pdxpl.lo CC H5Pencdec.lo CC H5Pfapl.lo CC H5Pfcpl.lo CC H5Pfmpl.lo CC H5Pgcpl.lo CC H5Pint.lo CC H5Plapl.lo CC H5Plcpl.lo CC H5Pocpl.lo CC H5Pocpypl.lo CC H5Pstrcpl.lo CC H5Ptest.lo CC H5PB.lo CC H5PL.lo CC H5PLint.lo CC H5PLpath.lo CC H5PLplugin_cache.lo CC H5R.lo CC H5Rint.lo CC H5Rdeprec.lo CC H5UC.lo CC H5RS.lo CC H5S.lo CC H5Sall.lo CC H5Sdbg.lo CC H5Shyper.lo CC H5Snone.lo CC H5Spoint.lo CC H5Sselect.lo CC H5Stest.lo CC H5SL.lo CC H5SM.lo CC H5SMbtree2.lo CC H5SMcache.lo CC H5SMmessage.lo CC H5SMtest.lo CC H5ST.lo CC H5T.lo CC H5Tarray.lo CC H5Tbit.lo CC H5Tcommit.lo CC H5Tcompound.lo CC H5Tconv.lo CC H5Tcset.lo CC H5Tdbg.lo CC H5Tdeprec.lo CC H5Tenum.lo CC H5Tfields.lo CC H5Tfixed.lo CC H5Tfloat.lo CC H5detect.o CCLD H5detect LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo -Wl,-O1 | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5detect > H5Tinit.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5Tinit.c ; exit 1) CC H5Tinit.lo CC H5Tnative.lo CC H5Toffset.lo CC H5Toh.lo CC H5Topaque.lo CC H5Torder.lo CC H5Tpad.lo CC H5Tprecis.lo CC H5Tstrpad.lo CC H5Tvisit.lo CC H5Tvlen.lo CC H5TS.lo CC H5VM.lo CC H5WB.lo CC H5Z.lo CC H5Zdeflate.lo CC H5Zfletcher32.lo CC H5Znbit.lo CC H5Zshuffle.lo CC H5Zscaleoffset.lo CC H5Zszip.lo CC H5Ztrans.lo CC H5FDros3.lo CC H5FDs3comms.lo CCLD libhdf5.la make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src' make[3]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src' make[3]: Entering directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/c++' make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/c++' make[4]: Nothing to be done for 'build-lib'. make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/c++' + cd src + make lib make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/c++/src' make[5]: Entering directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/c++/src' CXX H5Exception.lo CXX H5IdComponent.lo CXX H5DataSpace.lo CXX H5PropList.lo CXX H5Library.lo CXX H5FaccProp.lo CXX H5FcreatProp.lo CXX H5LcreatProp.lo CXX H5LaccProp.lo CXX H5DaccProp.lo CXX H5DxferProp.lo CXX H5DcreatProp.lo CXX H5Location.lo CXX H5AbstractDs.lo CXX H5Attribute.lo CXX H5Object.lo CXX H5OcreatProp.lo CXX H5DataType.lo CXX H5AtomType.lo CXX H5PredType.lo CXX H5EnumType.lo CXX H5IntType.lo CXX H5FloatType.lo CXX H5StrType.lo CXX H5ArrayType.lo CXX H5VarLenType.lo CXX H5CompType.lo CXX H5DataSet.lo CXX H5CommonFG.lo CXX H5Group.lo CXX H5File.lo CXXLD libhdf5_cpp.la make[5]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/c++/src' make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/c++/src' make[3]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/c++' make[3]: Entering directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hl' make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hl' make[4]: Nothing to be done for 'build-lib'. make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hl' + cd src + make lib make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hl/src' make[5]: Entering directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hl/src' CC H5DO.lo CC H5DS.lo CC H5IM.lo CC H5LT.lo CC H5LTanalyze.lo CC H5LTparse.lo CC H5PT.lo CC H5TB.lo CC H5LD.lo CCLD libhdf5_hl.la make[5]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hl/src' make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hl/src' + cd c++ + make lib make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hl/c++' make[5]: Entering directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hl/c++' make[5]: Nothing to be done for 'build-lib'. make[5]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hl/c++' + cd src + make lib make[5]: Entering directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hl/c++/src' make[6]: Entering directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hl/c++/src' CXX H5PacketTable.lo CXXLD libhdf5_hl_cpp.la make[6]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hl/c++/src' make[5]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hl/c++/src' make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hl/c++' make[3]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/hl' make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5' mkdir -p "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/src"/*.h "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/c++/src"/*.h "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/hl/src"/*.h "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/hl/c++/src"/*.h "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/src"/libhdf5.settings "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" mkdir -p "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" cp "hdf5/src/.libs/libhdf5.a" "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" cp "hdf5/c++/src/.libs/libhdf5_cpp.a" "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" cp "hdf5/hl/src/.libs/libhdf5_hl.a" "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" cp "hdf5/hl/c++/src/.libs/libhdf5_hl_cpp.a" "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I"/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rhdf5lib.c -o Rhdf5lib.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o Rhdf5lib.so Rhdf5lib.o /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/libhdf5.a -lsz -laec -lz -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rhdf5lib) begin installing package ‘rhdf5filters’ * installing *source* package ‘plotly’ ... ** package ‘plotly’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plotly) * installing *source* package ‘RSpectra’ ... ** package ‘RSpectra’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSeQmUY/R.INSTALL4dfa03100991b/RSpectra/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSE_FC_LEN_T -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c eigs_gen.cpp -o eigs_gen.o In file included from eigs_gen.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from eigs_gen.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from eigs_gen.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from eigs_gen.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSE_FC_LEN_T -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c eigs_sym.cpp -o eigs_sym.o In file included from eigs_sym.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from eigs_sym.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from eigs_sym.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from eigs_sym.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSE_FC_LEN_T -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c is_sym.cpp -o is_sym.o In file included from is_sym.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from is_sym.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from is_sym.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from is_sym.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSE_FC_LEN_T -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c matops.cpp -o matops.o In file included from matops.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from matops.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from matops.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from matops.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSE_FC_LEN_T -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c register_routines.c -o register_routines.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSE_FC_LEN_T -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c svds.cpp -o svds.o In file included from svds.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from svds.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from svds.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from svds.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o RSpectra.so eigs_gen.o eigs_sym.o is_sym.o matops.o register_routines.o svds.o -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSeQmUY/R.INSTALL4dfa03100991b/RSpectra/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-RSpectra/00new/RSpectra/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RSpectra) begin installing package ‘uwot’ * installing *source* package ‘rhdf5filters’ ... ** package ‘rhdf5filters’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... yes checking for clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to enable C11 features... none needed configure: is NOT Bioc build machine configure: configuring BZIP2 filter... checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for bzlib.h... yes checking for BZ2_bzDecompressInit in -lbz2... yes configure: Using system bzip2 library configure: configuring the Zstd filter... checking for zstd.h... yes checking for ZSTD_decompress in -lzstd... yes configure: Using system Zstd library configure: configuring the BLOSC filter... checking for blosc.h... yes checking for blosc_compress in -lblosc... yes configure: Using system BLOSC library configure: configuring the VBZ filter checking whether C compiler accepts -mavx... yes checking for x86 avx instruction support... yes configure: creating ./config.status config.status: creating src/bzip2/Makefile config.status: creating src/zstd/Makefile config.status: creating src/blosc/lib/blosc-1.20.1/Makefile config.status: creating src/blosc/Makefile config.status: creating src/vbz/Makefile config.status: creating src/vbz/vbz/Makefile config.status: creating src/vbz/third_party/streamvbyte/Makefile config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src' make -C zstd make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src/zstd' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -fpic -shared H5Zzstd.c -I/usr/local/include -I"/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include" \ -lzstd -Wl,-O1 -o libH5Zzstd.so make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src/zstd' make -C blosc make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src/blosc' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -g -O3 -Wall -pedantic -fpic -shared -I/usr/local/include -I"/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include" H5Zblosc.cpp \ -Wl,-O1 -lblosc -lzstd -lz -o libH5Zblosc.so make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src/blosc' make -C bzip2 make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src/bzip2' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -fpic -shared H5Zbzip2.c -I/usr/local/include -I"/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include" \ -lbz2 -Wl,-O1 -o libH5Zbz2.so make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src/bzip2' make -C lzf make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src/lzf' make -C lzf make[3]: Entering directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src/lzf/lzf' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -fpic -c lzf_c.c clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -fpic -c lzf_d.c rm -f liblzf.a ar cq liblzf.a lzf_c.o lzf_d.o ranlib liblzf.a make[3]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src/lzf/lzf' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -fpic -shared H5Zlzf.c -I/usr/local/include -I"/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include" \ -I./lzf/ ./lzf/liblzf.a -Wl,-O1 -o libH5Zlzf.so make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src/lzf' make -C vbz make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src/vbz' make -C third_party/streamvbyte make[3]: Entering directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src/vbz/third_party/streamvbyte' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -std=gnu99 -fpic -Iinclude -c ./src/streamvbyte_decode.c clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -std=gnu99 -fpic -Iinclude -c ./src/streamvbyte_encode.c clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -std=gnu99 -fpic -Iinclude -c ./src/streamvbytedelta_decode.c clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -std=gnu99 -fpic -Iinclude -c ./src/streamvbytedelta_encode.c clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -std=gnu99 -fpic -Iinclude -c ./src/streamvbyte_0124_encode.c clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -std=gnu99 -fpic -Iinclude -c ./src/streamvbyte_0124_decode.c clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -std=gnu99 -fpic -Iinclude -c ./src/streamvbyte_zigzag.c rm -f libstreamvbyte.a ar cq libstreamvbyte.a streamvbyte_decode.o streamvbyte_encode.o streamvbytedelta_decode.o streamvbytedelta_encode.o streamvbyte_0124_encode.o streamvbyte_0124_decode.o streamvbyte_zigzag.o ranlib libstreamvbyte.a make[3]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src/vbz/third_party/streamvbyte' make -C vbz make[3]: Entering directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src/vbz/vbz' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -g -O3 -Wall -pedantic -fpic -I/usr/local/include -I"/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include" -I../third_party/streamvbyte/include/ -I../third_party/ -I../../zstd/ -mssse3 -c vbz.cpp -o vbz.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -g -O3 -Wall -pedantic -fpic -I/usr/local/include -I"/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include" -I../third_party/streamvbyte/include/ -I../third_party/ -I../../zstd/ -mssse3 -c v0/vbz_streamvbyte.cpp -o v0/vbz_streamvbyte.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -g -O3 -Wall -pedantic -fpic -I/usr/local/include -I"/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include" -I../third_party/streamvbyte/include/ -I../third_party/ -I../../zstd/ -mssse3 -c v1/vbz_streamvbyte.cpp -o v1/vbz_streamvbyte.o make[3]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src/vbz/vbz' rm -f libvbz.a ar cq libvbz.a vbz/vbz.o vbz/v0/vbz_streamvbyte.o vbz/v1/vbz_streamvbyte.o ranlib libvbz.a clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -g -O3 -Wall -pedantic -fpic -I/usr/local/include -I"/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include" -shared vbz_plugin.cpp \ libvbz.a -Wl,-O1 -lzstd third_party/streamvbyte/libstreamvbyte.a -o libH5Zvbz.so make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src/vbz' mkdir -p "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/" cp bzip2/libH5Zbz2.so blosc/libH5Zblosc.so lzf/libH5Zlzf.so zstd/libH5Zzstd.so vbz/libH5Zvbz.so "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/" clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I"/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include" -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c rhdf5filters.c -o rhdf5filters.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o rhdf5filters.so rhdf5filters.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz30BFc/R.INSTALL50020161cfd36/rhdf5filters/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-rhdf5filters/00new/rhdf5filters/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rhdf5filters) begin installing package ‘rhdf5’ * installing *source* package ‘shiny’ ... ** package ‘shiny’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny) begin installing package ‘miniUI’ * installing *source* package ‘miniUI’ ... ** package ‘miniUI’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (miniUI) * installing *source* package ‘GenomicRanges’ ... ** package ‘GenomicRanges’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpP2aGpr/R.INSTALL4f8d619117a6c/GenomicRanges/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c IRanges_stubs.c -o IRanges_stubs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c transcript_utils.c -o transcript_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o GenomicRanges.so IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpP2aGpr/R.INSTALL4f8d619117a6c/GenomicRanges/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-GenomicRanges/00new/GenomicRanges/libs ** R ** inst ** byte-compile and prepare package for lazy loading /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7fb81aba1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7fb81aba302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7fb81ad02616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7fb81acaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7fb81aca921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7fb81acab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7fb81aca9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7fb81ad03636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7fb81acaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7fb81aca921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7fb81acb3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7fb81acaf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7fb81aca9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7fb81aca9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7fb81adf4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #15 0x7fb81adf7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #16 0x7fb81adf7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #17 0x7fb81adf783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #18 0x55f238688b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #19 0x7fb81a033d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #20 0x7fb81a033e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #21 0x55f2385ad360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f7f6bda1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f7f6bda302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f7f6bf02616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f7f6beaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f7f6bea921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f7f6beab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f7f6bea9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f7f6bf03636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f7f6beaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f7f6bea921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f7f6beb3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7f7f6beaf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7f7f6bea9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7f7f6bea9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7f7f6bff4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #15 0x7f7f6bff7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #16 0x7f7f6bff7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #17 0x7f7f6bff783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #18 0x55605b2e1b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #19 0x7f7f6b14dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #20 0x7f7f6b14de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #21 0x55605b206360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f87c29a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f87c29a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f87c2b02616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f87c2aaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f87c2aa921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f87c2aab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f87c2aa9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f87c2b03636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f87c2aaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f87c2aa921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f87c2ab3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7f87c2aaf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7f87c2aa9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7f87c2aa9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7f87c2bf4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #15 0x7f87c2bf7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #16 0x7f87c2bf7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #17 0x7f87c2bf783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #18 0x55711fd00b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #19 0x7f87c1e33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #20 0x7f87c1e33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #21 0x55711fc25360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** testing if installed package keeps a record of temporary installation path * DONE (GenomicRanges) * installing *source* package ‘rhdf5’ ... ** package ‘rhdf5’ successfully unpacked and MD5 sums checked ** using staged installation configure: creating ./config.status config.status: creating src/external_filters.h ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpl0CtA5/R.INSTALL505a32ecfab92/rhdf5/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5.c -o H5.o In file included from H5.c:1: In file included from ./H5.h:8: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void 2 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5A.c -o H5A.o In file included from H5A.c:2: In file included from ./H5A.h:9: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void H5A.c:314:9: warning: arithmetic on a pointer to void is a GNU extension [-Wgnu-pointer-arith] 314 | buf += H5Tget_size(dtype_id); | ~~~ ^ 3 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5D.c -o H5D.o In file included from H5D.c:1: In file included from ./H5D.h:9: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void 2 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5E.c -o H5E.o In file included from H5E.c:1: In file included from ./H5E.h:9: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void 2 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5F.c -o H5F.o In file included from H5F.c:1: In file included from ./H5F.h:9: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void 2 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5G.c -o H5G.o In file included from H5G.c:1: In file included from ./H5G.h:9: ./H5constants.h:10:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 10 | SEXP _H5constants(); | ^ | void In file included from H5G.c:1: In file included from ./H5G.h:10: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void 3 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5I.c -o H5I.o In file included from H5I.c:1: In file included from ./H5I.h:9: ./H5constants.h:10:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 10 | SEXP _H5constants(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5L.c -o H5L.o In file included from H5L.c:1: In file included from ./H5L.h:9: ./H5constants.h:10:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 10 | SEXP _H5constants(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5O.c -o H5O.o In file included from H5O.c:1: In file included from ./H5O.h:9: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void In file included from H5O.c:1: In file included from ./H5O.h:10: ./H5constants.h:10:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 10 | SEXP _H5constants(); | ^ | void 3 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5P.c -o H5P.o In file included from H5P.c:1: In file included from ./H5P.h:10: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void 2 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5PL.c -o H5PL.o In file included from H5PL.c:1: In file included from ./H5PL.h:9: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void In file included from H5PL.c:1: ./H5PL.h:12:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 12 | SEXP _H5PLsize(); | ^ | void H5PL.c:42:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 42 | SEXP _H5PLsize() { | ^ | void 4 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5R.c -o H5R.o In file included from H5R.c:1: In file included from ./H5R.h:9: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void 2 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5S.c -o H5S.o In file included from H5S.c:1: In file included from ./H5S.h:9: ./H5constants.h:10:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 10 | SEXP _H5constants(); | ^ | void In file included from H5S.c:1: In file included from ./H5S.h:10: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void 3 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5S_extras.c -o H5S_extras.o In file included from H5S_extras.c:5: In file included from ./H5S.h:9: ./H5constants.h:10:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 10 | SEXP _H5constants(); | ^ | void In file included from H5S_extras.c:5: In file included from ./H5S.h:10: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void 3 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5T.c -o H5T.o In file included from H5T.c:1: In file included from ./H5T.h:9: ./H5constants.h:10:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 10 | SEXP _H5constants(); | ^ | void In file included from H5T.c:1: ./H5T.h:32:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 32 | SEXP _h5createComplexDataType(); | ^ | void 2 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5T_extras.c -o H5T_extras.o In file included from H5T_extras.c:1: In file included from ./H5T.h:9: ./H5constants.h:10:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 10 | SEXP _H5constants(); | ^ | void In file included from H5T_extras.c:1: ./H5T.h:32:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 32 | SEXP _h5createComplexDataType(); | ^ | void H5T_extras.c:37:9: warning: arithmetic on a pointer to void is a GNU extension [-Wgnu-pointer-arith] 37 | buf += sizeof(int); | ~~~ ^ H5T_extras.c:44:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 44 | SEXP _h5createComplexDataType() { | ^ | void 4 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5Z.c -o H5Z.o In file included from H5Z.c:1: In file included from ./H5Z.h:9: ./H5constants.h:10:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 10 | SEXP _H5constants(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5constants.c -o H5constants.o In file included from H5constants.c:1: In file included from ./H5G.h:9: ./H5constants.h:10:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 10 | SEXP _H5constants(); | ^ | void In file included from H5constants.c:1: In file included from ./H5G.h:10: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void H5constants.c:46:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 46 | SEXP _H5constants( ) { | ^ | void 4 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c HandleList.cpp -o HandleList.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c HandleListWrap.c -o HandleListWrap.o In file included from HandleListWrap.c:3: ./HandleListcpp.h:8:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 8 | hsize_t idListSizeCPP ( ); | ^ | void In file included from HandleListWrap.c:5: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void HandleListWrap.c:12:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 12 | SEXP _h5listIdentifier( ) { | ^ | void HandleListWrap.c:57:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 57 | SEXP _h5validObjects( ) { | ^ | void 5 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bit64conversion.c -o bit64conversion.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c external_filters.c -o external_filters.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c h5dump.c -o h5dump.o In file included from h5dump.c:1: In file included from ./h5dump.h:10: In file included from ./H5G.h:9: ./H5constants.h:10:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 10 | SEXP _H5constants(); | ^ | void In file included from h5dump.c:1: In file included from ./h5dump.h:10: In file included from ./H5G.h:10: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void 3 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c h5ls.c -o h5ls.o In file included from h5ls.c:1: In file included from ./h5ls.h:9: In file included from ./H5G.h:9: ./H5constants.h:10:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 10 | SEXP _H5constants(); | ^ | void In file included from h5ls.c:1: In file included from ./h5ls.h:9: In file included from ./H5G.h:10: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void 3 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c h5testLock.c -o h5testLock.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c h5writeDataFrame.c -o h5writeDataFrame.o In file included from h5writeDataFrame.c:1: In file included from ./h5writeDataFrame.h:9: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void 2 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c printdatatype.c -o printdatatype.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c wrap.c -o wrap.o In file included from wrap.c:5: ./H5constants.h:10:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 10 | SEXP _H5constants(); | ^ | void In file included from wrap.c:6: In file included from ./H5.h:8: ./HandleList.h:15:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 15 | SEXP _h5listIdentifier( ); | ^ | void ./HandleList.h:16:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 16 | SEXP _h5validObjects( ); | ^ | void In file included from wrap.c:17: ./H5T.h:32:30: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 32 | SEXP _h5createComplexDataType(); | ^ | void In file included from wrap.c:19: ./H5PL.h:12:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 12 | SEXP _H5PLsize(); | ^ | void 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o rhdf5.so H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5PL.o H5R.o H5S.o H5S_extras.o H5T.o H5T_extras.o H5Z.o H5constants.o HandleList.o HandleListWrap.o bit64conversion.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o /home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/lib/libhdf5.a -lcrypto -lcurl -lsz -laec -lz -ldl -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpl0CtA5/R.INSTALL505a32ecfab92/rhdf5/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-rhdf5/00new/rhdf5/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function _H5constants through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/Rtmpl0CtA5/R.INSTALL505a32ecfab92/rhdf5/src/H5constants.c:46: note: _H5constants defined here #0 0x7f1b121a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f1b121a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f1b122f9c36 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #3 0x7f1b122aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f1b122a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f1b122b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #6 0x7f1b122af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #7 0x7f1b122a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #8 0x7f1b122a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #9 0x7f1b123f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #10 0x7f1b123f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #11 0x7f1b123f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #12 0x7f1b123f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #13 0x556293829b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #14 0x7f1b11633d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #15 0x7f1b11633e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #16 0x55629374e360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f1af9cbed71 in H5I_dec_ref /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7f1afa079348 in H5T__path_find_real /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7f1afa0678a3 in H5T__register /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7f1afa04f950 in H5T__register_int /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7f1afa0465af in H5T__init_package /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7f1afa03f3a0 in H5T_init /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7f1af98a75d2 in H5_init_library /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7f1af98ad7bc in H5open /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7f1af98976d6 in _H5constants /home/hornik/tmp/scratch/Rtmpl0CtA5/R.INSTALL505a32ecfab92/rhdf5/src/H5constants.c:52:35 #9 0x7f1b12149cca in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #10 0x7f1b121a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #11 0x7f1b122f9c36 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #12 0x7f1b122aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #13 0x7f1b122a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #14 0x7f1b122b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #15 0x7f1b122af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #16 0x7f1b122a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #17 0x7f1b122a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #18 0x7f1b123f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #19 0x7f1b123f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #20 0x7f1b123f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #21 0x7f1b123f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #22 0x556293829b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #23 0x7f1b11633d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #24 0x7f1b11633e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #25 0x55629374e360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f1af9cba48a in H5I__clear_type_cb /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7f1afa01e4b7 in H5SL_try_free_safe /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7f1af9cb9bc3 in H5I_clear_type /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7f1afa051ef2 in H5T_top_term_package /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7f1af98a8771 in H5_term_library /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7f1b1164c1a0 in __run_exit_handlers stdlib/exit.c:108:8 #6 0x7f1b1164c259 in exit stdlib/exit.c:138:3 #7 0x7f1b127aaf1c in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #8 0x7f1b127b5237 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #9 0x7f1b123f75c4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #10 0x7f1b123f75c4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #11 0x7f1b123f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #12 0x556293829b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #13 0x7f1b11633d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #14 0x7f1b11633e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #15 0x55629374e360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function _H5constants through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/Rtmpl0CtA5/R.INSTALL505a32ecfab92/rhdf5/src/H5constants.c:46: note: _H5constants defined here #0 0x7f8c693a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f8c693a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f8c694f9c36 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #3 0x7f8c694aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f8c694a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f8c694b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #6 0x7f8c694af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #7 0x7f8c694a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #8 0x7f8c694a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #9 0x7f8c695f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #10 0x7f8c695f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #11 0x7f8c695f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #12 0x7f8c695f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #13 0x55a538d36b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #14 0x7f8c68833d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #15 0x7f8c68833e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #16 0x55a538c5b360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f8c50ebed71 in H5I_dec_ref /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7f8c51279348 in H5T__path_find_real /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7f8c512678a3 in H5T__register /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7f8c5124f950 in H5T__register_int /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7f8c512465af in H5T__init_package /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7f8c5123f3a0 in H5T_init /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7f8c50aa75d2 in H5_init_library /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7f8c50aad7bc in H5open /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7f8c50a976d6 in _H5constants /home/hornik/tmp/scratch/Rtmpl0CtA5/R.INSTALL505a32ecfab92/rhdf5/src/H5constants.c:52:35 #9 0x7f8c69349cca in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #10 0x7f8c693a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #11 0x7f8c694f9c36 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #12 0x7f8c694aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #13 0x7f8c694a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #14 0x7f8c694b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #15 0x7f8c694af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #16 0x7f8c694a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #17 0x7f8c694a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #18 0x7f8c695f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #19 0x7f8c695f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #20 0x7f8c695f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #21 0x7f8c695f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #22 0x55a538d36b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #23 0x7f8c68833d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #24 0x7f8c68833e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #25 0x55a538c5b360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f8c50eba48a in H5I__clear_type_cb /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7f8c5121e4b7 in H5SL_try_free_safe /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7f8c50eb9bc3 in H5I_clear_type /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7f8c51251ef2 in H5T_top_term_package /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7f8c50aa8771 in H5_term_library /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7f8c6884c1a0 in __run_exit_handlers stdlib/exit.c:108:8 #6 0x7f8c6884c259 in exit stdlib/exit.c:138:3 #7 0x7f8c699aaf1c in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #8 0x7f8c699b5237 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #9 0x7f8c695f75c4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #10 0x7f8c695f75c4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #11 0x7f8c695f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #12 0x55a538d36b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #13 0x7f8c68833d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #14 0x7f8c68833e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #15 0x55a538c5b360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** testing if installed package keeps a record of temporary installation path * DONE (rhdf5) * installing *source* package ‘SparseArray’ ... ** package ‘SparseArray’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0jYilq/R.INSTALL4f9d85519aebc/SparseArray/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ExtendableJaggedArray.c -o ExtendableJaggedArray.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c IRanges_stubs.c -o IRanges_stubs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c OPBufTree.c -o OPBufTree.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_SparseArray.c -o R_init_SparseArray.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rvector_summarization.c -o Rvector_summarization.o Rvector_summarization.c:1360:12: warning: unused function 'any_NA_list_elt' [-Wunused-function] 1360 | static int any_NA_list_elt(SEXP x) | ^~~~~~~~~~~~~~~ Rvector_summarization.c:1370:12: warning: unused function 'count_NA_list_elts' [-Wunused-function] 1370 | static int count_NA_list_elts(SEXP x) | ^~~~~~~~~~~~~~~~~~ 2 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rvector_utils.c -o Rvector_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SBT_utils.c -o SBT_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SVT_SparseArray_class.c -o SVT_SparseArray_class.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseArray_Arith_methods.c -o SparseArray_Arith_methods.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseArray_Compare_methods.c -o SparseArray_Compare_methods.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseArray_Complex_methods.c -o SparseArray_Complex_methods.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseArray_Logic_methods.c -o SparseArray_Logic_methods.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseArray_Math_methods.c -o SparseArray_Math_methods.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseArray_abind.c -o SparseArray_abind.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseArray_aperm.c -o SparseArray_aperm.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseArray_dim_tuning.c -o SparseArray_dim_tuning.o SparseArray_dim_tuning.c:141:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 141 | static SEXP make_scalar_lacunar_leaf() | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseArray_matrixStats.c -o SparseArray_matrixStats.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseArray_misc_methods.c -o SparseArray_misc_methods.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseArray_subassignment.c -o SparseArray_subassignment.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseArray_subassignment_OLD.c -o SparseArray_subassignment_OLD.o SparseArray_subassignment_OLD.c:245:19: warning: unused function 'descend_to_bottom_by_coords0' [-Wunused-function] 245 | static inline int descend_to_bottom_by_coords0(SEXP SVT, SEXP SVT0, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseArray_subsetting.c -o SparseArray_subsetting.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseArray_summarization.c -o SparseArray_summarization.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseMatrix_mult.c -o SparseMatrix_mult.o SparseMatrix_mult.c:306:13: warning: unused function 'crossprod2_doubleSV_doublemat' [-Wunused-function] 306 | static void crossprod2_doubleSV_doublemat( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SparseMatrix_mult.c:346:13: warning: unused function 'crossprod2_doublemat_doubleSV' [-Wunused-function] 346 | static void crossprod2_doublemat_doubleSV( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseVec.c -o SparseVec.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseVec_Arith.c -o SparseVec_Arith.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseVec_Compare.c -o SparseVec_Compare.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseVec_Logic.c -o SparseVec_Logic.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseVec_Math.c -o SparseVec_Math.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SparseVec_dotprod.c -o SparseVec_dotprod.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XVector_stubs.c -o XVector_stubs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c argcheck_utils.c -o argcheck_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c coerceVector2.c -o coerceVector2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c leaf_utils.c -o leaf_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c randomSparseArray.c -o randomSparseArray.o randomSparseArray.c:42:19: warning: unused function 'binary_find_interval' [-Wunused-function] 42 | static inline int binary_find_interval(double u, | ^~~~~~~~~~~~~~~~~~~~ 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c readSparseCSV.c -o readSparseCSV.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowsum_methods.c -o rowsum_methods.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sparseMatrix_utils.c -o sparseMatrix_utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test.c -o test.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c thread_control.c -o thread_control.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o SparseArray.so ExtendableJaggedArray.o IRanges_stubs.o OPBufTree.o R_init_SparseArray.o Rvector_summarization.o Rvector_utils.o S4Vectors_stubs.o SBT_utils.o SVT_SparseArray_class.o SparseArray_Arith_methods.o SparseArray_Compare_methods.o SparseArray_Complex_methods.o SparseArray_Logic_methods.o SparseArray_Math_methods.o SparseArray_abind.o SparseArray_aperm.o SparseArray_dim_tuning.o SparseArray_matrixStats.o SparseArray_misc_methods.o SparseArray_subassignment.o SparseArray_subassignment_OLD.o SparseArray_subsetting.o SparseArray_summarization.o SparseMatrix_mult.o SparseVec.o SparseVec_Arith.o SparseVec_Compare.o SparseVec_Logic.o SparseVec_Math.o SparseVec_dotprod.o XVector_stubs.o argcheck_utils.o coerceVector2.o leaf_utils.o randomSparseArray.o readSparseCSV.o rowsum_methods.o sparseMatrix_utils.o test.o thread_control.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0jYilq/R.INSTALL4f9d85519aebc/SparseArray/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-SparseArray/00new/SparseArray/libs ** R ** inst ** byte-compile and prepare package for lazy loading /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7fc1ebda1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7fc1ebda302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7fc1ebf02616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7fc1ebeaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7fc1ebea921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7fc1ebeab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7fc1ebea9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7fc1ebf03636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7fc1ebeaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7fc1ebea921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7fc1ebeb3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7fc1ebeaf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7fc1ebea9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7fc1ebea9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7fc1ebff4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #15 0x7fc1ebff7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #16 0x7fc1ebff7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #17 0x7fc1ebff783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #18 0x5595ecd19b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #19 0x7fc1eb14dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #20 0x7fc1eb14de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #21 0x5595ecc3e360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f7dc17a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f7dc17a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f7dc1902616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f7dc18aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f7dc18a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f7dc18ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f7dc18a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f7dc1903636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f7dc18aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f7dc18a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f7dc18b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7f7dc18af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7f7dc18a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7f7dc18a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7f7dc19f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #15 0x7f7dc19f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #16 0x7f7dc19f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #17 0x7f7dc19f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #18 0x55c75467eb84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #19 0x7f7dc0c33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #20 0x7f7dc0c33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #21 0x55c7545a3360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f8ed5fa1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f8ed5fa302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f8ed6102616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f8ed60aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f8ed60a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f8ed60ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f8ed60a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f8ed6103636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f8ed60aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f8ed60a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f8ed60b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7f8ed60af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7f8ed60a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7f8ed60a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7f8ed61f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #15 0x7f8ed61f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #16 0x7f8ed61f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #17 0x7f8ed61f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #18 0x556d57d53b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #19 0x7f8ed5433d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #20 0x7f8ed5433e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #21 0x556d57c78360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** testing if installed package keeps a record of temporary installation path * DONE (SparseArray) begin installing package ‘DelayedArray’ * installing *source* package ‘igraph’ ... ** package ‘igraph’ successfully unpacked and MD5 sums checked ** using staged installation libxml2 include directories: -I/usr/include/libxml2 libxml2 library link flags: -lxml2 Using installed GLPK ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpq7jLCi/R.INSTALL4d8f360246e90/igraph/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cpp11.cpp -o cpp11.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cpprinterface.cpp -o cpprinterface.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.cpp -o init.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rinterface.c -o rinterface.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rinterface_extra.c -o rinterface_extra.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rrandom.c -o rrandom.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c simpleraytracer.cpp -o simpleraytracer.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dgetv0.f -o vendor/arpack/dgetv0.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dlaqrb.f -o vendor/arpack/dlaqrb.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dmout.f -o vendor/arpack/dmout.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dnaitr.f -o vendor/arpack/dnaitr.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dnapps.f -o vendor/arpack/dnapps.o ./vendor/arpack/dnapps.f:342:19: warning: Reference to the procedure 'igraphdvout' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes call igraphdvout (logfil, 1, h(i+1,i), ndigit, ^ ./vendor/arpack/dnapps.f:271:13: previous reference to 'igraphdvout' call igraphdvout (logfil, 1, [sigmar], ndigit, ^ ./vendor/arpack/dnapps.f:593:10: warning: Reference to the procedure 'dgemv' has an implicit interface that is distinct from another reference: incompatible dummy argument #10: incompatible dummy data object shapes call dgemv ('N', n, kplusp-i+1, one, v, ldv, ^ ./vendor/arpack/dnapps.f:584:11: previous reference to 'dgemv' & call dgemv ('N', n, kplusp, one, v, ldv, q(1,kev+1), 1, zero, ^ ./vendor/arpack/dnapps.f:624:10: warning: Reference to the procedure 'igraphdvout' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes call igraphdvout (logfil, 1, q(kplusp,kev), ndigit, ^ ./vendor/arpack/dnapps.f:271:13: previous reference to 'igraphdvout' call igraphdvout (logfil, 1, [sigmar], ndigit, ^ ./vendor/arpack/dnapps.f:626:10: warning: Reference to the procedure 'igraphdvout' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes call igraphdvout (logfil, 1, h(kev+1,kev), ndigit, ^ ./vendor/arpack/dnapps.f:271:13: previous reference to 'igraphdvout' call igraphdvout (logfil, 1, [sigmar], ndigit, ^ flang-new-18 -fpic -g -O2 -c vendor/arpack/dnaup2.f -o vendor/arpack/dnaup2.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dnaupd.f -o vendor/arpack/dnaupd.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dnconv.f -o vendor/arpack/dnconv.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dneigh.f -o vendor/arpack/dneigh.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dneupd.f -o vendor/arpack/dneupd.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dngets.f -o vendor/arpack/dngets.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dsaitr.f -o vendor/arpack/dsaitr.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dsapps.f -o vendor/arpack/dsapps.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dsaup2.f -o vendor/arpack/dsaup2.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dsaupd.f -o vendor/arpack/dsaupd.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dsconv.f -o vendor/arpack/dsconv.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dseigt.f -o vendor/arpack/dseigt.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dsesrt.f -o vendor/arpack/dsesrt.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dseupd.f -o vendor/arpack/dseupd.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dsgets.f -o vendor/arpack/dsgets.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dsortc.f -o vendor/arpack/dsortc.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dsortr.f -o vendor/arpack/dsortr.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dstatn.f -o vendor/arpack/dstatn.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dstats.f -o vendor/arpack/dstats.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dstqrb.f -o vendor/arpack/dstqrb.o flang-new-18 -fpic -g -O2 -c vendor/arpack/dvout.f -o vendor/arpack/dvout.o flang-new-18 -fpic -g -O2 -c vendor/arpack/ivout.f -o vendor/arpack/ivout.o flang-new-18 -fpic -g -O2 -c vendor/arpack/second.f -o vendor/arpack/second.o flang-new-18 -fpic -g -O2 -c vendor/arpack/wrap.f -o vendor/arpack/wrap.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/betweenness.c -o vendor/cigraph/src/centrality/betweenness.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/centrality_other.c -o vendor/cigraph/src/centrality/centrality_other.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/centralization.c -o vendor/cigraph/src/centrality/centralization.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/closeness.c -o vendor/cigraph/src/centrality/closeness.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/coreness.c -o vendor/cigraph/src/centrality/coreness.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/eigenvector.c -o vendor/cigraph/src/centrality/eigenvector.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/hub_authority.c -o vendor/cigraph/src/centrality/hub_authority.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/pagerank.c -o vendor/cigraph/src/centrality/pagerank.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/prpack.cpp -o vendor/cigraph/src/centrality/prpack.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/prpack/prpack_base_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_base_graph.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/prpack/prpack_igraph_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_igraph_graph.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/prpack/prpack_preprocessed_ge_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_ge_graph.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/prpack/prpack_preprocessed_gs_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_gs_graph.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/prpack/prpack_preprocessed_scc_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_scc_graph.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/prpack/prpack_preprocessed_schur_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_schur_graph.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/prpack/prpack_result.cpp -o vendor/cigraph/src/centrality/prpack/prpack_result.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/prpack/prpack_solver.cpp -o vendor/cigraph/src/centrality/prpack/prpack_solver.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/prpack/prpack_utils.cpp -o vendor/cigraph/src/centrality/prpack/prpack_utils.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/truss.cpp -o vendor/cigraph/src/centrality/truss.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/cliquer/cliquer.c -o vendor/cigraph/src/cliques/cliquer/cliquer.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/cliquer/cliquer_graph.c -o vendor/cigraph/src/cliques/cliquer/cliquer_graph.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/cliquer/reorder.c -o vendor/cigraph/src/cliques/cliquer/reorder.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/cliquer_wrapper.c -o vendor/cigraph/src/cliques/cliquer_wrapper.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/cliques.c -o vendor/cigraph/src/cliques/cliques.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/glet.c -o vendor/cigraph/src/cliques/glet.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/maximal_cliques.c -o vendor/cigraph/src/cliques/maximal_cliques.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/community_misc.c -o vendor/cigraph/src/community/community_misc.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/edge_betweenness.c -o vendor/cigraph/src/community/edge_betweenness.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/fast_modularity.c -o vendor/cigraph/src/community/fast_modularity.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/fluid.c -o vendor/cigraph/src/community/fluid.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/infomap/infomap.cc -o vendor/cigraph/src/community/infomap/infomap.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/infomap/infomap_FlowGraph.cc -o vendor/cigraph/src/community/infomap/infomap_FlowGraph.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/infomap/infomap_Greedy.cc -o vendor/cigraph/src/community/infomap/infomap_Greedy.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/label_propagation.c -o vendor/cigraph/src/community/label_propagation.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/leading_eigenvector.c -o vendor/cigraph/src/community/leading_eigenvector.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/leiden.c -o vendor/cigraph/src/community/leiden.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/louvain.c -o vendor/cigraph/src/community/louvain.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/modularity.c -o vendor/cigraph/src/community/modularity.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/optimal_modularity.c -o vendor/cigraph/src/community/optimal_modularity.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/spinglass/NetDataTypes.cpp -o vendor/cigraph/src/community/spinglass/NetDataTypes.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/spinglass/NetRoutines.cpp -o vendor/cigraph/src/community/spinglass/NetRoutines.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/spinglass/clustertool.cpp -o vendor/cigraph/src/community/spinglass/clustertool.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/spinglass/pottsmodel_2.cpp -o vendor/cigraph/src/community/spinglass/pottsmodel_2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/voronoi.c -o vendor/cigraph/src/community/voronoi.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/walktrap/walktrap.cpp -o vendor/cigraph/src/community/walktrap/walktrap.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/walktrap/walktrap_communities.cpp -o vendor/cigraph/src/community/walktrap/walktrap_communities.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/walktrap/walktrap_graph.cpp -o vendor/cigraph/src/community/walktrap/walktrap_graph.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/walktrap/walktrap_heap.cpp -o vendor/cigraph/src/community/walktrap/walktrap_heap.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/connectivity/cohesive_blocks.c -o vendor/cigraph/src/connectivity/cohesive_blocks.o vendor/cigraph/src/connectivity/cohesive_blocks.c:300:30: warning: variable 'kept' set but not used [-Wunused-but-set-variable] 300 | igraph_integer_t no, kept = 0; | ^ 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/connectivity/components.c -o vendor/cigraph/src/connectivity/components.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/connectivity/reachability.c -o vendor/cigraph/src/connectivity/reachability.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/connectivity/separators.c -o vendor/cigraph/src/connectivity/separators.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/adjacency.c -o vendor/cigraph/src/constructors/adjacency.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/atlas.c -o vendor/cigraph/src/constructors/atlas.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/basic_constructors.c -o vendor/cigraph/src/constructors/basic_constructors.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/circulant.c -o vendor/cigraph/src/constructors/circulant.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/de_bruijn.c -o vendor/cigraph/src/constructors/de_bruijn.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/famous.c -o vendor/cigraph/src/constructors/famous.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/full.c -o vendor/cigraph/src/constructors/full.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/generalized_petersen.c -o vendor/cigraph/src/constructors/generalized_petersen.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/kautz.c -o vendor/cigraph/src/constructors/kautz.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/lattices.c -o vendor/cigraph/src/constructors/lattices.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/lcf.c -o vendor/cigraph/src/constructors/lcf.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/linegraph.c -o vendor/cigraph/src/constructors/linegraph.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/prufer.c -o vendor/cigraph/src/constructors/prufer.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/regular.c -o vendor/cigraph/src/constructors/regular.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/trees.c -o vendor/cigraph/src/constructors/trees.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/array.c -o vendor/cigraph/src/core/array.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/bitset.c -o vendor/cigraph/src/core/bitset.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/bitset_list.c -o vendor/cigraph/src/core/bitset_list.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/buckets.c -o vendor/cigraph/src/core/buckets.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/cutheap.c -o vendor/cigraph/src/core/cutheap.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/dqueue.c -o vendor/cigraph/src/core/dqueue.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/error.c -o vendor/cigraph/src/core/error.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/estack.c -o vendor/cigraph/src/core/estack.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/fixed_vectorlist.c -o vendor/cigraph/src/core/fixed_vectorlist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/genheap.c -o vendor/cigraph/src/core/genheap.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/grid.c -o vendor/cigraph/src/core/grid.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/heap.c -o vendor/cigraph/src/core/heap.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/indheap.c -o vendor/cigraph/src/core/indheap.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/interruption.c -o vendor/cigraph/src/core/interruption.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/marked_queue.c -o vendor/cigraph/src/core/marked_queue.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/matrix.c -o vendor/cigraph/src/core/matrix.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/matrix_list.c -o vendor/cigraph/src/core/matrix_list.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/memory.c -o vendor/cigraph/src/core/memory.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/printing.c -o vendor/cigraph/src/core/printing.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/progress.c -o vendor/cigraph/src/core/progress.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/psumtree.c -o vendor/cigraph/src/core/psumtree.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/set.c -o vendor/cigraph/src/core/set.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/sparsemat.c -o vendor/cigraph/src/core/sparsemat.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/stack.c -o vendor/cigraph/src/core/stack.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/statusbar.c -o vendor/cigraph/src/core/statusbar.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/strvector.c -o vendor/cigraph/src/core/strvector.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/trie.c -o vendor/cigraph/src/core/trie.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/vector.c -o vendor/cigraph/src/core/vector.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/vector_list.c -o vendor/cigraph/src/core/vector_list.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/vector_ptr.c -o vendor/cigraph/src/core/vector_ptr.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/flow/flow.c -o vendor/cigraph/src/flow/flow.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/flow/flow_conversion.c -o vendor/cigraph/src/flow/flow_conversion.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/flow/st-cuts.c -o vendor/cigraph/src/flow/st-cuts.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/barabasi.c -o vendor/cigraph/src/games/barabasi.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/callaway_traits.c -o vendor/cigraph/src/games/callaway_traits.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/chung_lu.c -o vendor/cigraph/src/games/chung_lu.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/citations.c -o vendor/cigraph/src/games/citations.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/correlated.c -o vendor/cigraph/src/games/correlated.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/degree_sequence.c -o vendor/cigraph/src/games/degree_sequence.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/degree_sequence_vl/gengraph_degree_sequence.cpp -o vendor/cigraph/src/games/degree_sequence_vl/gengraph_degree_sequence.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp -o vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp:271:19: warning: variable 'cost' set but not used [-Wunused-but-set-variable] 271 | unsigned long cost = 0; | ^ vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp:290:12: warning: variable 'avg_K' set but not used [-Wunused-but-set-variable] 290 | double avg_K = 0; | ^ vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp:291:12: warning: variable 'avg_T' set but not used [-Wunused-but-set-variable] 291 | double avg_T = 0; | ^ 3 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_optimized.cpp -o vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_optimized.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/degree_sequence_vl/gengraph_mr-connected.cpp -o vendor/cigraph/src/games/degree_sequence_vl/gengraph_mr-connected.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/degree_sequence_vl/gengraph_random.cpp -o vendor/cigraph/src/games/degree_sequence_vl/gengraph_random.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/dotproduct.c -o vendor/cigraph/src/games/dotproduct.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/erdos_renyi.c -o vendor/cigraph/src/games/erdos_renyi.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/establishment.c -o vendor/cigraph/src/games/establishment.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/forestfire.c -o vendor/cigraph/src/games/forestfire.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/grg.c -o vendor/cigraph/src/games/grg.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/growing_random.c -o vendor/cigraph/src/games/growing_random.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/islands.c -o vendor/cigraph/src/games/islands.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/k_regular.c -o vendor/cigraph/src/games/k_regular.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/preference.c -o vendor/cigraph/src/games/preference.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/recent_degree.c -o vendor/cigraph/src/games/recent_degree.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/sbm.c -o vendor/cigraph/src/games/sbm.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/static_fitness.c -o vendor/cigraph/src/games/static_fitness.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/tree.c -o vendor/cigraph/src/games/tree.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/watts_strogatz.c -o vendor/cigraph/src/games/watts_strogatz.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/adjlist.c -o vendor/cigraph/src/graph/adjlist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/attributes.c -o vendor/cigraph/src/graph/attributes.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/basic_query.c -o vendor/cigraph/src/graph/basic_query.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/caching.c -o vendor/cigraph/src/graph/caching.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/cattributes.c -o vendor/cigraph/src/graph/cattributes.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/graph_list.c -o vendor/cigraph/src/graph/graph_list.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/iterators.c -o vendor/cigraph/src/graph/iterators.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/type_common.c -o vendor/cigraph/src/graph/type_common.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/type_indexededgelist.c -o vendor/cigraph/src/graph/type_indexededgelist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/visitors.c -o vendor/cigraph/src/graph/visitors.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/hrg/hrg.cc -o vendor/cigraph/src/hrg/hrg.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/hrg/hrg_types.cc -o vendor/cigraph/src/hrg/hrg_types.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/glpk_support.c -o vendor/cigraph/src/internal/glpk_support.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/hacks.c -o vendor/cigraph/src/internal/hacks.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/lsap.c -o vendor/cigraph/src/internal/lsap.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/qsort.c -o vendor/cigraph/src/internal/qsort.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/qsort_r.c -o vendor/cigraph/src/internal/qsort_r.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/utils.c -o vendor/cigraph/src/internal/utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/zeroin.c -o vendor/cigraph/src/internal/zeroin.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/dimacs.c -o vendor/cigraph/src/io/dimacs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/dl.c -o vendor/cigraph/src/io/dl.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/dot.c -o vendor/cigraph/src/io/dot.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/edgelist.c -o vendor/cigraph/src/io/edgelist.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/gml-tree.c -o vendor/cigraph/src/io/gml-tree.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/gml.c -o vendor/cigraph/src/io/gml.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/graphdb.c -o vendor/cigraph/src/io/graphdb.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/graphml.c -o vendor/cigraph/src/io/graphml.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/leda.c -o vendor/cigraph/src/io/leda.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/lgl.c -o vendor/cigraph/src/io/lgl.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/ncol.c -o vendor/cigraph/src/io/ncol.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/pajek.c -o vendor/cigraph/src/io/pajek.o vendor/cigraph/src/io/pajek.c:524:22: warning: variable 'notop' set but not used [-Wunused-but-set-variable] 524 | igraph_integer_t notop = 0, nobottom = 0; | ^ 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/parse_utils.c -o vendor/cigraph/src/io/parse_utils.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/bliss.cc -o vendor/cigraph/src/isomorphism/bliss.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/bliss/defs.cc -o vendor/cigraph/src/isomorphism/bliss/defs.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/bliss/graph.cc -o vendor/cigraph/src/isomorphism/bliss/graph.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/bliss/heap.cc -o vendor/cigraph/src/isomorphism/bliss/heap.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/bliss/orbit.cc -o vendor/cigraph/src/isomorphism/bliss/orbit.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/bliss/partition.cc -o vendor/cigraph/src/isomorphism/bliss/partition.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/bliss/uintseqhash.cc -o vendor/cigraph/src/isomorphism/bliss/uintseqhash.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/bliss/utils.cc -o vendor/cigraph/src/isomorphism/bliss/utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/isoclasses.c -o vendor/cigraph/src/isomorphism/isoclasses.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/isomorphism_misc.c -o vendor/cigraph/src/isomorphism/isomorphism_misc.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/lad.c -o vendor/cigraph/src/isomorphism/lad.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/queries.c -o vendor/cigraph/src/isomorphism/queries.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/vf2.c -o vendor/cigraph/src/isomorphism/vf2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/circular.c -o vendor/cigraph/src/layout/circular.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/davidson_harel.c -o vendor/cigraph/src/layout/davidson_harel.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/drl/DensityGrid.cpp -o vendor/cigraph/src/layout/drl/DensityGrid.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/drl/DensityGrid_3d.cpp -o vendor/cigraph/src/layout/drl/DensityGrid_3d.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/drl/drl_graph.cpp -o vendor/cigraph/src/layout/drl/drl_graph.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/drl/drl_graph_3d.cpp -o vendor/cigraph/src/layout/drl/drl_graph_3d.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/drl/drl_layout.cpp -o vendor/cigraph/src/layout/drl/drl_layout.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/drl/drl_layout_3d.cpp -o vendor/cigraph/src/layout/drl/drl_layout_3d.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/drl/drl_parse.cpp -o vendor/cigraph/src/layout/drl/drl_parse.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/fruchterman_reingold.c -o vendor/cigraph/src/layout/fruchterman_reingold.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/gem.c -o vendor/cigraph/src/layout/gem.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/graphopt.c -o vendor/cigraph/src/layout/graphopt.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/kamada_kawai.c -o vendor/cigraph/src/layout/kamada_kawai.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/large_graph.c -o vendor/cigraph/src/layout/large_graph.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/layout_bipartite.c -o vendor/cigraph/src/layout/layout_bipartite.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/layout_grid.c -o vendor/cigraph/src/layout/layout_grid.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/layout_random.c -o vendor/cigraph/src/layout/layout_random.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/mds.c -o vendor/cigraph/src/layout/mds.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/merge_dla.c -o vendor/cigraph/src/layout/merge_dla.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/merge_grid.c -o vendor/cigraph/src/layout/merge_grid.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/reingold_tilford.c -o vendor/cigraph/src/layout/reingold_tilford.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/sugiyama.c -o vendor/cigraph/src/layout/sugiyama.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/umap.c -o vendor/cigraph/src/layout/umap.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/linalg/arpack.c -o vendor/cigraph/src/linalg/arpack.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/linalg/blas.c -o vendor/cigraph/src/linalg/blas.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/linalg/eigen.c -o vendor/cigraph/src/linalg/eigen.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/linalg/lapack.c -o vendor/cigraph/src/linalg/lapack.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/math/complex.c -o vendor/cigraph/src/math/complex.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/math/safe_intop.c -o vendor/cigraph/src/math/safe_intop.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/math/utils.c -o vendor/cigraph/src/math/utils.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/bipartite.c -o vendor/cigraph/src/misc/bipartite.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/chordality.c -o vendor/cigraph/src/misc/chordality.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/cocitation.c -o vendor/cigraph/src/misc/cocitation.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/coloring.c -o vendor/cigraph/src/misc/coloring.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/conversion.c -o vendor/cigraph/src/misc/conversion.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/cycle_bases.c -o vendor/cigraph/src/misc/cycle_bases.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/degree_sequence.cpp -o vendor/cigraph/src/misc/degree_sequence.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/embedding.c -o vendor/cigraph/src/misc/embedding.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/feedback_arc_set.c -o vendor/cigraph/src/misc/feedback_arc_set.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/graphicality.c -o vendor/cigraph/src/misc/graphicality.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/matching.c -o vendor/cigraph/src/misc/matching.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/microscopic_update.c -o vendor/cigraph/src/misc/microscopic_update.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/mixing.c -o vendor/cigraph/src/misc/mixing.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/motifs.c -o vendor/cigraph/src/misc/motifs.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/order_cycle.cpp -o vendor/cigraph/src/misc/order_cycle.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/other.c -o vendor/cigraph/src/misc/other.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/power_law_fit.c -o vendor/cigraph/src/misc/power_law_fit.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/scan.c -o vendor/cigraph/src/misc/scan.o vendor/cigraph/src/misc/scan.c:76:23: warning: unused function 'igraph_i_trans4_il_simplify' [-Wunused-function] 76 | static igraph_error_t igraph_i_trans4_il_simplify(const igraph_t *graph, igraph_inclist_t *il, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/sir.c -o vendor/cigraph/src/misc/sir.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/spanning_trees.c -o vendor/cigraph/src/misc/spanning_trees.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/add_edge.c -o vendor/cigraph/src/operators/add_edge.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/complementer.c -o vendor/cigraph/src/operators/complementer.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/compose.c -o vendor/cigraph/src/operators/compose.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/connect_neighborhood.c -o vendor/cigraph/src/operators/connect_neighborhood.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/contract.c -o vendor/cigraph/src/operators/contract.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/difference.c -o vendor/cigraph/src/operators/difference.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/disjoint_union.c -o vendor/cigraph/src/operators/disjoint_union.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/intersection.c -o vendor/cigraph/src/operators/intersection.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/join.c -o vendor/cigraph/src/operators/join.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/misc_internal.c -o vendor/cigraph/src/operators/misc_internal.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/permute.c -o vendor/cigraph/src/operators/permute.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/reverse.c -o vendor/cigraph/src/operators/reverse.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/rewire.c -o vendor/cigraph/src/operators/rewire.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/rewire_edges.c -o vendor/cigraph/src/operators/rewire_edges.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/simplify.c -o vendor/cigraph/src/operators/simplify.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/subgraph.c -o vendor/cigraph/src/operators/subgraph.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/union.c -o vendor/cigraph/src/operators/union.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/all_shortest_paths.c -o vendor/cigraph/src/paths/all_shortest_paths.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/astar.c -o vendor/cigraph/src/paths/astar.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/bellman_ford.c -o vendor/cigraph/src/paths/bellman_ford.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/dijkstra.c -o vendor/cigraph/src/paths/dijkstra.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/distances.c -o vendor/cigraph/src/paths/distances.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/eulerian.c -o vendor/cigraph/src/paths/eulerian.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/floyd_warshall.c -o vendor/cigraph/src/paths/floyd_warshall.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/histogram.c -o vendor/cigraph/src/paths/histogram.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/johnson.c -o vendor/cigraph/src/paths/johnson.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/random_walk.c -o vendor/cigraph/src/paths/random_walk.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/shortest_paths.c -o vendor/cigraph/src/paths/shortest_paths.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/simple_paths.c -o vendor/cigraph/src/paths/simple_paths.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/sparsifier.c -o vendor/cigraph/src/paths/sparsifier.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/unweighted.c -o vendor/cigraph/src/paths/unweighted.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/voronoi.c -o vendor/cigraph/src/paths/voronoi.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/widest_paths.c -o vendor/cigraph/src/paths/widest_paths.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/basic_properties.c -o vendor/cigraph/src/properties/basic_properties.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/complete.c -o vendor/cigraph/src/properties/complete.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/constraint.c -o vendor/cigraph/src/properties/constraint.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/convergence_degree.c -o vendor/cigraph/src/properties/convergence_degree.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/dag.c -o vendor/cigraph/src/properties/dag.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/degrees.c -o vendor/cigraph/src/properties/degrees.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/ecc.c -o vendor/cigraph/src/properties/ecc.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/girth.c -o vendor/cigraph/src/properties/girth.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/loops.c -o vendor/cigraph/src/properties/loops.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/multiplicity.c -o vendor/cigraph/src/properties/multiplicity.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/neighborhood.c -o vendor/cigraph/src/properties/neighborhood.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/perfect.c -o vendor/cigraph/src/properties/perfect.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/spectral.c -o vendor/cigraph/src/properties/spectral.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/trees.c -o vendor/cigraph/src/properties/trees.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/triangles.c -o vendor/cigraph/src/properties/triangles.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/random/random.c -o vendor/cigraph/src/random/random.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/random/rng_glibc2.c -o vendor/cigraph/src/random/rng_glibc2.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/random/rng_mt19937.c -o vendor/cigraph/src/random/rng_mt19937.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/random/rng_pcg32.c -o vendor/cigraph/src/random/rng_pcg32.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/random/rng_pcg64.c -o vendor/cigraph/src/random/rng_pcg64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/version.c -o vendor/cigraph/src/version.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_add.c -o vendor/cigraph/vendor/cs/cs_add.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_amd.c -o vendor/cigraph/vendor/cs/cs_amd.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_chol.c -o vendor/cigraph/vendor/cs/cs_chol.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_cholsol.c -o vendor/cigraph/vendor/cs/cs_cholsol.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_compress.c -o vendor/cigraph/vendor/cs/cs_compress.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_counts.c -o vendor/cigraph/vendor/cs/cs_counts.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_cumsum.c -o vendor/cigraph/vendor/cs/cs_cumsum.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_dfs.c -o vendor/cigraph/vendor/cs/cs_dfs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_dmperm.c -o vendor/cigraph/vendor/cs/cs_dmperm.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_droptol.c -o vendor/cigraph/vendor/cs/cs_droptol.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_dropzeros.c -o vendor/cigraph/vendor/cs/cs_dropzeros.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_dupl.c -o vendor/cigraph/vendor/cs/cs_dupl.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_entry.c -o vendor/cigraph/vendor/cs/cs_entry.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_ereach.c -o vendor/cigraph/vendor/cs/cs_ereach.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_etree.c -o vendor/cigraph/vendor/cs/cs_etree.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_fkeep.c -o vendor/cigraph/vendor/cs/cs_fkeep.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_gaxpy.c -o vendor/cigraph/vendor/cs/cs_gaxpy.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_happly.c -o vendor/cigraph/vendor/cs/cs_happly.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_house.c -o vendor/cigraph/vendor/cs/cs_house.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_ipvec.c -o vendor/cigraph/vendor/cs/cs_ipvec.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_leaf.c -o vendor/cigraph/vendor/cs/cs_leaf.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_load.c -o vendor/cigraph/vendor/cs/cs_load.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_lsolve.c -o vendor/cigraph/vendor/cs/cs_lsolve.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_ltsolve.c -o vendor/cigraph/vendor/cs/cs_ltsolve.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_lu.c -o vendor/cigraph/vendor/cs/cs_lu.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_lusol.c -o vendor/cigraph/vendor/cs/cs_lusol.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_malloc.c -o vendor/cigraph/vendor/cs/cs_malloc.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_maxtrans.c -o vendor/cigraph/vendor/cs/cs_maxtrans.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_multiply.c -o vendor/cigraph/vendor/cs/cs_multiply.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_norm.c -o vendor/cigraph/vendor/cs/cs_norm.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_permute.c -o vendor/cigraph/vendor/cs/cs_permute.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_pinv.c -o vendor/cigraph/vendor/cs/cs_pinv.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_post.c -o vendor/cigraph/vendor/cs/cs_post.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_print.c -o vendor/cigraph/vendor/cs/cs_print.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_pvec.c -o vendor/cigraph/vendor/cs/cs_pvec.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_qr.c -o vendor/cigraph/vendor/cs/cs_qr.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_qrsol.c -o vendor/cigraph/vendor/cs/cs_qrsol.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_randperm.c -o vendor/cigraph/vendor/cs/cs_randperm.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_reach.c -o vendor/cigraph/vendor/cs/cs_reach.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_scatter.c -o vendor/cigraph/vendor/cs/cs_scatter.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_scc.c -o vendor/cigraph/vendor/cs/cs_scc.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_schol.c -o vendor/cigraph/vendor/cs/cs_schol.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_spsolve.c -o vendor/cigraph/vendor/cs/cs_spsolve.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_sqr.c -o vendor/cigraph/vendor/cs/cs_sqr.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_symperm.c -o vendor/cigraph/vendor/cs/cs_symperm.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_tdfs.c -o vendor/cigraph/vendor/cs/cs_tdfs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_transpose.c -o vendor/cigraph/vendor/cs/cs_transpose.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_updown.c -o vendor/cigraph/vendor/cs/cs_updown.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_usolve.c -o vendor/cigraph/vendor/cs/cs_usolve.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_util.c -o vendor/cigraph/vendor/cs/cs_util.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_utsolve.c -o vendor/cigraph/vendor/cs/cs_utsolve.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-advance-128.c -o vendor/cigraph/vendor/pcg/pcg-advance-128.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-advance-64.c -o vendor/cigraph/vendor/pcg/pcg-advance-64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-output-128.c -o vendor/cigraph/vendor/pcg/pcg-output-128.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-output-32.c -o vendor/cigraph/vendor/pcg/pcg-output-32.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-output-64.c -o vendor/cigraph/vendor/pcg/pcg-output-64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-rngs-128.c -o vendor/cigraph/vendor/pcg/pcg-rngs-128.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-rngs-64.c -o vendor/cigraph/vendor/pcg/pcg-rngs-64.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/gss.c -o vendor/cigraph/vendor/plfit/gss.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/hzeta.c -o vendor/cigraph/vendor/plfit/hzeta.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/kolmogorov.c -o vendor/cigraph/vendor/plfit/kolmogorov.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/lbfgs.c -o vendor/cigraph/vendor/plfit/lbfgs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/mt.c -o vendor/cigraph/vendor/plfit/mt.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/options.c -o vendor/cigraph/vendor/plfit/options.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/platform.c -o vendor/cigraph/vendor/plfit/platform.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/plfit.c -o vendor/cigraph/vendor/plfit/plfit.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/plfit_error.c -o vendor/cigraph/vendor/plfit/plfit_error.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/rbinom.c -o vendor/cigraph/vendor/plfit/rbinom.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/sampling.c -o vendor/cigraph/vendor/plfit/sampling.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/dl-lexer.c -o vendor/io/dl-lexer.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/dl-parser.c -o vendor/io/dl-parser.o src/vendor/io/dl-parser.c:1376:9: warning: variable 'igraph_dl_yynerrs' set but not used [-Wunused-but-set-variable] 1376 | int yynerrs = 0; | ^ vendor/io/dl-parser.c:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs igraph_dl_yynerrs | ^ 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/gml-lexer.c -o vendor/io/gml-lexer.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/gml-parser.c -o vendor/io/gml-parser.o src/vendor/io/gml-parser.c:1294:9: warning: variable 'igraph_gml_yynerrs' set but not used [-Wunused-but-set-variable] 1294 | int yynerrs = 0; | ^ vendor/io/gml-parser.c:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs igraph_gml_yynerrs | ^ 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/lgl-lexer.c -o vendor/io/lgl-lexer.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/lgl-parser.c -o vendor/io/lgl-parser.o src/vendor/io/lgl-parser.c:1246:9: warning: variable 'igraph_lgl_yynerrs' set but not used [-Wunused-but-set-variable] 1246 | int yynerrs = 0; | ^ vendor/io/lgl-parser.c:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs igraph_lgl_yynerrs | ^ 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/ncol-lexer.c -o vendor/io/ncol-lexer.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/ncol-parser.c -o vendor/io/ncol-parser.o src/vendor/io/ncol-parser.c:1239:9: warning: variable 'igraph_ncol_yynerrs' set but not used [-Wunused-but-set-variable] 1239 | int yynerrs = 0; | ^ vendor/io/ncol-parser.c:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs igraph_ncol_yynerrs | ^ 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/pajek-lexer.c -o vendor/io/pajek-lexer.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/pajek-parser.c -o vendor/io/pajek-parser.o src/vendor/io/pajek-parser.c:1531:9: warning: variable 'igraph_pajek_yynerrs' set but not used [-Wunused-but-set-variable] 1531 | int yynerrs = 0; | ^ vendor/io/pajek-parser.c:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs igraph_pajek_yynerrs | ^ 1 warning generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/simpleraytracer/Color.cpp -o vendor/simpleraytracer/Color.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/simpleraytracer/Light.cpp -o vendor/simpleraytracer/Light.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/simpleraytracer/Point.cpp -o vendor/simpleraytracer/Point.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/simpleraytracer/Ray.cpp -o vendor/simpleraytracer/Ray.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/simpleraytracer/RayTracer.cpp -o vendor/simpleraytracer/RayTracer.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/simpleraytracer/RayVector.cpp -o vendor/simpleraytracer/RayVector.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/simpleraytracer/Shape.cpp -o vendor/simpleraytracer/Shape.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/simpleraytracer/Sphere.cpp -o vendor/simpleraytracer/Sphere.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/simpleraytracer/Triangle.cpp -o vendor/simpleraytracer/Triangle.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/simpleraytracer/unit_limiter.cpp -o vendor/simpleraytracer/unit_limiter.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/R.c -o vendor/uuid/R.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/clear.c -o vendor/uuid/clear.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/compare.c -o vendor/uuid/compare.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/copy.c -o vendor/uuid/copy.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/gen_uuid.c -o vendor/uuid/gen_uuid.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/isnull.c -o vendor/uuid/isnull.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/pack.c -o vendor/uuid/pack.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/parse.c -o vendor/uuid/parse.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/unpack.c -o vendor/uuid/unpack.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/unparse.c -o vendor/uuid/unparse.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/mini-gmp/mini-gmp.c -o vendor/cigraph/vendor/mini-gmp/mini-gmp.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o igraph.so cpp11.o cpprinterface.o init.o rinterface.o rinterface_extra.o rrandom.o simpleraytracer.o vendor/arpack/dgetv0.o vendor/arpack/dlaqrb.o vendor/arpack/dmout.o vendor/arpack/dnaitr.o vendor/arpack/dnapps.o vendor/arpack/dnaup2.o vendor/arpack/dnaupd.o vendor/arpack/dnconv.o vendor/arpack/dneigh.o vendor/arpack/dneupd.o vendor/arpack/dngets.o vendor/arpack/dsaitr.o vendor/arpack/dsapps.o vendor/arpack/dsaup2.o vendor/arpack/dsaupd.o vendor/arpack/dsconv.o vendor/arpack/dseigt.o vendor/arpack/dsesrt.o vendor/arpack/dseupd.o vendor/arpack/dsgets.o vendor/arpack/dsortc.o vendor/arpack/dsortr.o vendor/arpack/dstatn.o vendor/arpack/dstats.o vendor/arpack/dstqrb.o vendor/arpack/dvout.o vendor/arpack/ivout.o vendor/arpack/second.o vendor/arpack/wrap.o vendor/cigraph/src/centrality/betweenness.o vendor/cigraph/src/centrality/centrality_other.o vendor/cigraph/src/centrality/centralization.o vendor/cigraph/src/centrality/closeness.o vendor/cigraph/src/centrality/coreness.o vendor/cigraph/src/centrality/eigenvector.o vendor/cigraph/src/centrality/hub_authority.o vendor/cigraph/src/centrality/pagerank.o vendor/cigraph/src/centrality/prpack.o vendor/cigraph/src/centrality/prpack/prpack_base_graph.o vendor/cigraph/src/centrality/prpack/prpack_igraph_graph.o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_ge_graph.o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_gs_graph.o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_scc_graph.o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_schur_graph.o vendor/cigraph/src/centrality/prpack/prpack_result.o vendor/cigraph/src/centrality/prpack/prpack_solver.o vendor/cigraph/src/centrality/prpack/prpack_utils.o vendor/cigraph/src/centrality/truss.o vendor/cigraph/src/cliques/cliquer/cliquer.o vendor/cigraph/src/cliques/cliquer/cliquer_graph.o vendor/cigraph/src/cliques/cliquer/reorder.o vendor/cigraph/src/cliques/cliquer_wrapper.o vendor/cigraph/src/cliques/cliques.o vendor/cigraph/src/cliques/glet.o vendor/cigraph/src/cliques/maximal_cliques.o vendor/cigraph/src/community/community_misc.o vendor/cigraph/src/community/edge_betweenness.o vendor/cigraph/src/community/fast_modularity.o vendor/cigraph/src/community/fluid.o vendor/cigraph/src/community/infomap/infomap.o vendor/cigraph/src/community/infomap/infomap_FlowGraph.o vendor/cigraph/src/community/infomap/infomap_Greedy.o vendor/cigraph/src/community/label_propagation.o vendor/cigraph/src/community/leading_eigenvector.o vendor/cigraph/src/community/leiden.o vendor/cigraph/src/community/louvain.o vendor/cigraph/src/community/modularity.o vendor/cigraph/src/community/optimal_modularity.o vendor/cigraph/src/community/spinglass/NetDataTypes.o vendor/cigraph/src/community/spinglass/NetRoutines.o vendor/cigraph/src/community/spinglass/clustertool.o vendor/cigraph/src/community/spinglass/pottsmodel_2.o vendor/cigraph/src/community/voronoi.o vendor/cigraph/src/community/walktrap/walktrap.o vendor/cigraph/src/community/walktrap/walktrap_communities.o vendor/cigraph/src/community/walktrap/walktrap_graph.o vendor/cigraph/src/community/walktrap/walktrap_heap.o vendor/cigraph/src/connectivity/cohesive_blocks.o vendor/cigraph/src/connectivity/components.o vendor/cigraph/src/connectivity/reachability.o vendor/cigraph/src/connectivity/separators.o vendor/cigraph/src/constructors/adjacency.o vendor/cigraph/src/constructors/atlas.o vendor/cigraph/src/constructors/basic_constructors.o vendor/cigraph/src/constructors/circulant.o vendor/cigraph/src/constructors/de_bruijn.o vendor/cigraph/src/constructors/famous.o vendor/cigraph/src/constructors/full.o vendor/cigraph/src/constructors/generalized_petersen.o vendor/cigraph/src/constructors/kautz.o vendor/cigraph/src/constructors/lattices.o vendor/cigraph/src/constructors/lcf.o vendor/cigraph/src/constructors/linegraph.o vendor/cigraph/src/constructors/prufer.o vendor/cigraph/src/constructors/regular.o vendor/cigraph/src/constructors/trees.o vendor/cigraph/src/core/array.o vendor/cigraph/src/core/bitset.o vendor/cigraph/src/core/bitset_list.o vendor/cigraph/src/core/buckets.o vendor/cigraph/src/core/cutheap.o vendor/cigraph/src/core/dqueue.o vendor/cigraph/src/core/error.o vendor/cigraph/src/core/estack.o vendor/cigraph/src/core/fixed_vectorlist.o vendor/cigraph/src/core/genheap.o vendor/cigraph/src/core/grid.o vendor/cigraph/src/core/heap.o vendor/cigraph/src/core/indheap.o vendor/cigraph/src/core/interruption.o vendor/cigraph/src/core/marked_queue.o vendor/cigraph/src/core/matrix.o vendor/cigraph/src/core/matrix_list.o vendor/cigraph/src/core/memory.o vendor/cigraph/src/core/printing.o vendor/cigraph/src/core/progress.o vendor/cigraph/src/core/psumtree.o vendor/cigraph/src/core/set.o vendor/cigraph/src/core/sparsemat.o vendor/cigraph/src/core/stack.o vendor/cigraph/src/core/statusbar.o vendor/cigraph/src/core/strvector.o vendor/cigraph/src/core/trie.o vendor/cigraph/src/core/vector.o vendor/cigraph/src/core/vector_list.o vendor/cigraph/src/core/vector_ptr.o vendor/cigraph/src/flow/flow.o vendor/cigraph/src/flow/flow_conversion.o vendor/cigraph/src/flow/st-cuts.o vendor/cigraph/src/games/barabasi.o vendor/cigraph/src/games/callaway_traits.o vendor/cigraph/src/games/chung_lu.o vendor/cigraph/src/games/citations.o vendor/cigraph/src/games/correlated.o vendor/cigraph/src/games/degree_sequence.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_degree_sequence.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_optimized.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_mr-connected.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_random.o vendor/cigraph/src/games/dotproduct.o vendor/cigraph/src/games/erdos_renyi.o vendor/cigraph/src/games/establishment.o vendor/cigraph/src/games/forestfire.o vendor/cigraph/src/games/grg.o vendor/cigraph/src/games/growing_random.o vendor/cigraph/src/games/islands.o vendor/cigraph/src/games/k_regular.o vendor/cigraph/src/games/preference.o vendor/cigraph/src/games/recent_degree.o vendor/cigraph/src/games/sbm.o vendor/cigraph/src/games/static_fitness.o vendor/cigraph/src/games/tree.o vendor/cigraph/src/games/watts_strogatz.o vendor/cigraph/src/graph/adjlist.o vendor/cigraph/src/graph/attributes.o vendor/cigraph/src/graph/basic_query.o vendor/cigraph/src/graph/caching.o vendor/cigraph/src/graph/cattributes.o vendor/cigraph/src/graph/graph_list.o vendor/cigraph/src/graph/iterators.o vendor/cigraph/src/graph/type_common.o vendor/cigraph/src/graph/type_indexededgelist.o vendor/cigraph/src/graph/visitors.o vendor/cigraph/src/hrg/hrg.o vendor/cigraph/src/hrg/hrg_types.o vendor/cigraph/src/internal/glpk_support.o vendor/cigraph/src/internal/hacks.o vendor/cigraph/src/internal/lsap.o vendor/cigraph/src/internal/qsort.o vendor/cigraph/src/internal/qsort_r.o vendor/cigraph/src/internal/utils.o vendor/cigraph/src/internal/zeroin.o vendor/cigraph/src/io/dimacs.o vendor/cigraph/src/io/dl.o vendor/cigraph/src/io/dot.o vendor/cigraph/src/io/edgelist.o vendor/cigraph/src/io/gml-tree.o vendor/cigraph/src/io/gml.o vendor/cigraph/src/io/graphdb.o vendor/cigraph/src/io/graphml.o vendor/cigraph/src/io/leda.o vendor/cigraph/src/io/lgl.o vendor/cigraph/src/io/ncol.o vendor/cigraph/src/io/pajek.o vendor/cigraph/src/io/parse_utils.o vendor/cigraph/src/isomorphism/bliss.o vendor/cigraph/src/isomorphism/bliss/defs.o vendor/cigraph/src/isomorphism/bliss/graph.o vendor/cigraph/src/isomorphism/bliss/heap.o vendor/cigraph/src/isomorphism/bliss/orbit.o vendor/cigraph/src/isomorphism/bliss/partition.o vendor/cigraph/src/isomorphism/bliss/uintseqhash.o vendor/cigraph/src/isomorphism/bliss/utils.o vendor/cigraph/src/isomorphism/isoclasses.o vendor/cigraph/src/isomorphism/isomorphism_misc.o vendor/cigraph/src/isomorphism/lad.o vendor/cigraph/src/isomorphism/queries.o vendor/cigraph/src/isomorphism/vf2.o vendor/cigraph/src/layout/circular.o vendor/cigraph/src/layout/davidson_harel.o vendor/cigraph/src/layout/drl/DensityGrid.o vendor/cigraph/src/layout/drl/DensityGrid_3d.o vendor/cigraph/src/layout/drl/drl_graph.o vendor/cigraph/src/layout/drl/drl_graph_3d.o vendor/cigraph/src/layout/drl/drl_layout.o vendor/cigraph/src/layout/drl/drl_layout_3d.o vendor/cigraph/src/layout/drl/drl_parse.o vendor/cigraph/src/layout/fruchterman_reingold.o vendor/cigraph/src/layout/gem.o vendor/cigraph/src/layout/graphopt.o vendor/cigraph/src/layout/kamada_kawai.o vendor/cigraph/src/layout/large_graph.o vendor/cigraph/src/layout/layout_bipartite.o vendor/cigraph/src/layout/layout_grid.o vendor/cigraph/src/layout/layout_random.o vendor/cigraph/src/layout/mds.o vendor/cigraph/src/layout/merge_dla.o vendor/cigraph/src/layout/merge_grid.o vendor/cigraph/src/layout/reingold_tilford.o vendor/cigraph/src/layout/sugiyama.o vendor/cigraph/src/layout/umap.o vendor/cigraph/src/linalg/arpack.o vendor/cigraph/src/linalg/blas.o vendor/cigraph/src/linalg/eigen.o vendor/cigraph/src/linalg/lapack.o vendor/cigraph/src/math/complex.o vendor/cigraph/src/math/safe_intop.o vendor/cigraph/src/math/utils.o vendor/cigraph/src/misc/bipartite.o vendor/cigraph/src/misc/chordality.o vendor/cigraph/src/misc/cocitation.o vendor/cigraph/src/misc/coloring.o vendor/cigraph/src/misc/conversion.o vendor/cigraph/src/misc/cycle_bases.o vendor/cigraph/src/misc/degree_sequence.o vendor/cigraph/src/misc/embedding.o vendor/cigraph/src/misc/feedback_arc_set.o vendor/cigraph/src/misc/graphicality.o vendor/cigraph/src/misc/matching.o vendor/cigraph/src/misc/microscopic_update.o vendor/cigraph/src/misc/mixing.o vendor/cigraph/src/misc/motifs.o vendor/cigraph/src/misc/order_cycle.o vendor/cigraph/src/misc/other.o vendor/cigraph/src/misc/power_law_fit.o vendor/cigraph/src/misc/scan.o vendor/cigraph/src/misc/sir.o vendor/cigraph/src/misc/spanning_trees.o vendor/cigraph/src/operators/add_edge.o vendor/cigraph/src/operators/complementer.o vendor/cigraph/src/operators/compose.o vendor/cigraph/src/operators/connect_neighborhood.o vendor/cigraph/src/operators/contract.o vendor/cigraph/src/operators/difference.o vendor/cigraph/src/operators/disjoint_union.o vendor/cigraph/src/operators/intersection.o vendor/cigraph/src/operators/join.o vendor/cigraph/src/operators/misc_internal.o vendor/cigraph/src/operators/permute.o vendor/cigraph/src/operators/reverse.o vendor/cigraph/src/operators/rewire.o vendor/cigraph/src/operators/rewire_edges.o vendor/cigraph/src/operators/simplify.o vendor/cigraph/src/operators/subgraph.o vendor/cigraph/src/operators/union.o vendor/cigraph/src/paths/all_shortest_paths.o vendor/cigraph/src/paths/astar.o vendor/cigraph/src/paths/bellman_ford.o vendor/cigraph/src/paths/dijkstra.o vendor/cigraph/src/paths/distances.o vendor/cigraph/src/paths/eulerian.o vendor/cigraph/src/paths/floyd_warshall.o vendor/cigraph/src/paths/histogram.o vendor/cigraph/src/paths/johnson.o vendor/cigraph/src/paths/random_walk.o vendor/cigraph/src/paths/shortest_paths.o vendor/cigraph/src/paths/simple_paths.o vendor/cigraph/src/paths/sparsifier.o vendor/cigraph/src/paths/unweighted.o vendor/cigraph/src/paths/voronoi.o vendor/cigraph/src/paths/widest_paths.o vendor/cigraph/src/properties/basic_properties.o vendor/cigraph/src/properties/complete.o vendor/cigraph/src/properties/constraint.o vendor/cigraph/src/properties/convergence_degree.o vendor/cigraph/src/properties/dag.o vendor/cigraph/src/properties/degrees.o vendor/cigraph/src/properties/ecc.o vendor/cigraph/src/properties/girth.o vendor/cigraph/src/properties/loops.o vendor/cigraph/src/properties/multiplicity.o vendor/cigraph/src/properties/neighborhood.o vendor/cigraph/src/properties/perfect.o vendor/cigraph/src/properties/spectral.o vendor/cigraph/src/properties/trees.o vendor/cigraph/src/properties/triangles.o vendor/cigraph/src/random/random.o vendor/cigraph/src/random/rng_glibc2.o vendor/cigraph/src/random/rng_mt19937.o vendor/cigraph/src/random/rng_pcg32.o vendor/cigraph/src/random/rng_pcg64.o vendor/cigraph/src/version.o vendor/cigraph/vendor/cs/cs_add.o vendor/cigraph/vendor/cs/cs_amd.o vendor/cigraph/vendor/cs/cs_chol.o vendor/cigraph/vendor/cs/cs_cholsol.o vendor/cigraph/vendor/cs/cs_compress.o vendor/cigraph/vendor/cs/cs_counts.o vendor/cigraph/vendor/cs/cs_cumsum.o vendor/cigraph/vendor/cs/cs_dfs.o vendor/cigraph/vendor/cs/cs_dmperm.o vendor/cigraph/vendor/cs/cs_droptol.o vendor/cigraph/vendor/cs/cs_dropzeros.o vendor/cigraph/vendor/cs/cs_dupl.o vendor/cigraph/vendor/cs/cs_entry.o vendor/cigraph/vendor/cs/cs_ereach.o vendor/cigraph/vendor/cs/cs_etree.o vendor/cigraph/vendor/cs/cs_fkeep.o vendor/cigraph/vendor/cs/cs_gaxpy.o vendor/cigraph/vendor/cs/cs_happly.o vendor/cigraph/vendor/cs/cs_house.o vendor/cigraph/vendor/cs/cs_ipvec.o vendor/cigraph/vendor/cs/cs_leaf.o vendor/cigraph/vendor/cs/cs_load.o vendor/cigraph/vendor/cs/cs_lsolve.o vendor/cigraph/vendor/cs/cs_ltsolve.o vendor/cigraph/vendor/cs/cs_lu.o vendor/cigraph/vendor/cs/cs_lusol.o vendor/cigraph/vendor/cs/cs_malloc.o vendor/cigraph/vendor/cs/cs_maxtrans.o vendor/cigraph/vendor/cs/cs_multiply.o vendor/cigraph/vendor/cs/cs_norm.o vendor/cigraph/vendor/cs/cs_permute.o vendor/cigraph/vendor/cs/cs_pinv.o vendor/cigraph/vendor/cs/cs_post.o vendor/cigraph/vendor/cs/cs_print.o vendor/cigraph/vendor/cs/cs_pvec.o vendor/cigraph/vendor/cs/cs_qr.o vendor/cigraph/vendor/cs/cs_qrsol.o vendor/cigraph/vendor/cs/cs_randperm.o vendor/cigraph/vendor/cs/cs_reach.o vendor/cigraph/vendor/cs/cs_scatter.o vendor/cigraph/vendor/cs/cs_scc.o vendor/cigraph/vendor/cs/cs_schol.o vendor/cigraph/vendor/cs/cs_spsolve.o vendor/cigraph/vendor/cs/cs_sqr.o vendor/cigraph/vendor/cs/cs_symperm.o vendor/cigraph/vendor/cs/cs_tdfs.o vendor/cigraph/vendor/cs/cs_transpose.o vendor/cigraph/vendor/cs/cs_updown.o vendor/cigraph/vendor/cs/cs_usolve.o vendor/cigraph/vendor/cs/cs_util.o vendor/cigraph/vendor/cs/cs_utsolve.o vendor/cigraph/vendor/pcg/pcg-advance-128.o vendor/cigraph/vendor/pcg/pcg-advance-64.o vendor/cigraph/vendor/pcg/pcg-output-128.o vendor/cigraph/vendor/pcg/pcg-output-32.o vendor/cigraph/vendor/pcg/pcg-output-64.o vendor/cigraph/vendor/pcg/pcg-rngs-128.o vendor/cigraph/vendor/pcg/pcg-rngs-64.o vendor/cigraph/vendor/plfit/gss.o vendor/cigraph/vendor/plfit/hzeta.o vendor/cigraph/vendor/plfit/kolmogorov.o vendor/cigraph/vendor/plfit/lbfgs.o vendor/cigraph/vendor/plfit/mt.o vendor/cigraph/vendor/plfit/options.o vendor/cigraph/vendor/plfit/platform.o vendor/cigraph/vendor/plfit/plfit.o vendor/cigraph/vendor/plfit/plfit_error.o vendor/cigraph/vendor/plfit/rbinom.o vendor/cigraph/vendor/plfit/sampling.o vendor/io/dl-lexer.o vendor/io/dl-parser.o vendor/io/gml-lexer.o vendor/io/gml-parser.o vendor/io/lgl-lexer.o vendor/io/lgl-parser.o vendor/io/ncol-lexer.o vendor/io/ncol-parser.o vendor/io/pajek-lexer.o vendor/io/pajek-parser.o vendor/simpleraytracer/Color.o vendor/simpleraytracer/Light.o vendor/simpleraytracer/Point.o vendor/simpleraytracer/Ray.o vendor/simpleraytracer/RayTracer.o vendor/simpleraytracer/RayVector.o vendor/simpleraytracer/Shape.o vendor/simpleraytracer/Sphere.o vendor/simpleraytracer/Triangle.o vendor/simpleraytracer/unit_limiter.o vendor/uuid/R.o vendor/uuid/clear.o vendor/uuid/compare.o vendor/uuid/copy.o vendor/uuid/gen_uuid.o vendor/uuid/isnull.o vendor/uuid/pack.o vendor/uuid/parse.o vendor/uuid/unpack.o vendor/uuid/unparse.o vendor/cigraph/vendor/mini-gmp/mini-gmp.o -lxml2 -lglpk -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpq7jLCi/R.INSTALL4d8f360246e90/igraph/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-igraph/00new/igraph/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (igraph) begin installing package ‘leiden’ * installing *source* package ‘leiden’ ... ** package ‘leiden’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leiden) * installing *source* package ‘uwot’ ... ** package ‘uwot’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVWp7Af/R.INSTALL504f726fb4f/uwot/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppAnnoy/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_RTTI -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppAnnoy/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_RTTI -fpic -g -O3 -Wall -pedantic -c connected_components.cpp -o connected_components.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppAnnoy/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_RTTI -fpic -g -O3 -Wall -pedantic -c nn_parallel.cpp -o nn_parallel.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppAnnoy/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_RTTI -fpic -g -O3 -Wall -pedantic -c perplexity.cpp -o perplexity.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppAnnoy/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_RTTI -fpic -g -O3 -Wall -pedantic -c r_uwot.cpp -o r_uwot.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppAnnoy/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_RTTI -fpic -g -O3 -Wall -pedantic -c smooth_knn.cpp -o smooth_knn.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppAnnoy/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_RTTI -fpic -g -O3 -Wall -pedantic -c supervised.cpp -o supervised.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppAnnoy/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_RTTI -fpic -g -O3 -Wall -pedantic -c thread.cpp -o thread.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppAnnoy/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_RTTI -fpic -g -O3 -Wall -pedantic -c transform.cpp -o transform.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o uwot.so RcppExports.o connected_components.o nn_parallel.o perplexity.o r_uwot.o smooth_knn.o supervised.o thread.o transform.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVWp7Af/R.INSTALL504f726fb4f/uwot/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-uwot/00new/uwot/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (uwot) begin installing package ‘Seurat’ * installing *source* package ‘DelayedArray’ ... ** package ‘DelayedArray’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpA1e2AP/R.INSTALL50883d79a45f/DelayedArray/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_DelayedArray.c -o R_init_DelayedArray.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c compress_atomic_vector.c -o compress_atomic_vector.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o compress_atomic_vector.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpA1e2AP/R.INSTALL50883d79a45f/DelayedArray/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-DelayedArray/00new/DelayedArray/libs ** R ** inst ** byte-compile and prepare package for lazy loading /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7fd45cfa1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7fd45cfa302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7fd45d102616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7fd45d0aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7fd45d0a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7fd45d0ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7fd45d0a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7fd45d103636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7fd45d0aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7fd45d0a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7fd45d0b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7fd45d0af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7fd45d0a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7fd45d0a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7fd45d0ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #15 0x7fd45d14aa64 in getvar /home/hornik/src/R/src/main/eval.c:5839:6 #16 0x7fd45d11a2a5 in bcEval_loop /home/hornik/src/R/src/main/eval.c:7852:20 #17 0x7fd45d0aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #18 0x7fd45d0a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #19 0x7fd45d0b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #20 0x7fd45d0af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #21 0x7fd45d0a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #22 0x7fd45d0a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #23 0x7fd45d1f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #24 0x7fd45d1f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #25 0x7fd45d1f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #26 0x7fd45d1f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #27 0x55e190359b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #28 0x7fd45c433d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #29 0x7fd45c433e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #30 0x55e19027e360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 Creating a new generic function for ‘apply’ in package ‘DelayedArray’ Creating a new generic function for ‘sweep’ in package ‘DelayedArray’ Creating a new generic function for ‘scale’ in package ‘DelayedArray’ Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qpois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘DelayedArray’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f49f67a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f49f67a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f49f6902616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f49f68aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f49f68a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f49f68ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f49f68a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f49f6903636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f49f68aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f49f68a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f49f68b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7f49f68af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7f49f68a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7f49f68a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7f49f69f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #15 0x7f49f69f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #16 0x7f49f69f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #17 0x7f49f69f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #18 0x55fbb9ab0b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #19 0x7f49f5c33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #20 0x7f49f5c33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #21 0x55fbb99d5360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7fe240ba1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7fe240ba302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7fe240d02616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7fe240caab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7fe240ca921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7fe240cab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7fe240ca9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7fe240d03636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7fe240caab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7fe240ca921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7fe240cb3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7fe240caf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7fe240ca9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7fe240ca9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7fe240df4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #15 0x7fe240df7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #16 0x7fe240df7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #17 0x7fe240df783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #18 0x560659c09b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #19 0x7fe23ff4dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #20 0x7fe23ff4de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #21 0x560659b2e360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** testing if installed package keeps a record of temporary installation path * DONE (DelayedArray) begin installing package ‘DelayedMatrixStats’ begin installing package ‘HDF5Array’ begin installing package ‘beachmat’ begin installing package ‘SummarizedExperiment’ * installing *source* package ‘DelayedMatrixStats’ ... ** package ‘DelayedMatrixStats’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f8f631a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f8f631a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f8f63302616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f8f632aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f8f632a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f8f632ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f8f632a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f8f63303636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f8f632aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f8f632a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f8f632b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7f8f632af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7f8f632a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7f8f632a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7f8f632ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #15 0x7f8f6334aa64 in getvar /home/hornik/src/R/src/main/eval.c:5839:6 #16 0x7f8f6331a2a5 in bcEval_loop /home/hornik/src/R/src/main/eval.c:7852:20 #17 0x7f8f632aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #18 0x7f8f632a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #19 0x7f8f632b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #20 0x7f8f632af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #21 0x7f8f632a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #22 0x7f8f632a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #23 0x7f8f633f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #24 0x7f8f633f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #25 0x7f8f633f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #26 0x7f8f633f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #27 0x55f5fb9fbb84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #28 0x7f8f62633d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #29 0x7f8f62633e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #30 0x55f5fb920360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f7a33da1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f7a33da302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f7a33f02616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f7a33eaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f7a33ea921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f7a33eab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f7a33ea9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f7a33f03636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f7a33eaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f7a33ea921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f7a33eb3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7f7a33eaf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7f7a33ea9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7f7a33ea9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7f7a33ff4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #15 0x7f7a33ff7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #16 0x7f7a33ff7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #17 0x7f7a33ff783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #18 0x558b024ecb84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #19 0x7f7a3314dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #20 0x7f7a3314de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #21 0x558b02411360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** testing if installed package can be loaded from final location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7fd79dba1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7fd79dba302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7fd79dd02616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7fd79dcaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7fd79dca921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7fd79dcab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7fd79dca9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7fd79dd03636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7fd79dcaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7fd79dca921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7fd79dcb3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7fd79dcaf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7fd79dca9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7fd79dca9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7fd79ddf4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #15 0x7fd79ddf7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #16 0x7fd79ddf7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #17 0x7fd79ddf783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #18 0x55a475eecb84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #19 0x7fd79cf4dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #20 0x7fd79cf4de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #21 0x55a475e11360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** testing if installed package keeps a record of temporary installation path * DONE (DelayedMatrixStats) * installing *source* package ‘HDF5Array’ ... ** package ‘HDF5Array’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpW8xF9Z/R.INSTALL50b7662f4375d/HDF5Array/src' clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5File.c -o H5File.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c global_errmsg_buf.c -o global_errmsg_buf.o In file included from global_errmsg_buf.c:5: ./global_errmsg_buf.h:4:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 4 | char * _HDF5Array_global_errmsg_buf(); | ^ | void global_errmsg_buf.c:8:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 8 | char * _HDF5Array_global_errmsg_buf() | ^ | void 2 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c H5DSetDescriptor.c -o H5DSetDescriptor.o In file included from H5DSetDescriptor.c:8: ./global_errmsg_buf.h:4:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 4 | char * _HDF5Array_global_errmsg_buf(); | ^ | void H5DSetDescriptor.c:515:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 515 | static void set_margin() | ^ | void 2 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c h5dimscales.c -o h5dimscales.o In file included from h5dimscales.c:8: ./global_errmsg_buf.h:4:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 4 | char * _HDF5Array_global_errmsg_buf(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c uaselection.c -o uaselection.o In file included from uaselection.c:7: ./global_errmsg_buf.h:4:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 4 | char * _HDF5Array_global_errmsg_buf(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c h5mread_helpers.c -o h5mread_helpers.o In file included from h5mread_helpers.c:17: ./global_errmsg_buf.h:4:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 4 | char * _HDF5Array_global_errmsg_buf(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c h5mread_startscounts.c -o h5mread_startscounts.o In file included from h5mread_startscounts.c:7: ./global_errmsg_buf.h:4:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 4 | char * _HDF5Array_global_errmsg_buf(); | ^ | void h5mread_startscounts.c:296:16: warning: variable 'num_hyperslabs' set but not used [-Wunused-but-set-variable] 296 | long long int num_hyperslabs = 0; | ^ 2 warnings generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ChunkIterator.c -o ChunkIterator.o In file included from ChunkIterator.c:7: ./global_errmsg_buf.h:4:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 4 | char * _HDF5Array_global_errmsg_buf(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c h5mread_index.c -o h5mread_index.o In file included from h5mread_index.c:7: ./global_errmsg_buf.h:4:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 4 | char * _HDF5Array_global_errmsg_buf(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c h5mread_sparse.c -o h5mread_sparse.o In file included from h5mread_sparse.c:7: ./global_errmsg_buf.h:4:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 4 | char * _HDF5Array_global_errmsg_buf(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c h5mread.c -o h5mread.o In file included from h5mread.c:8: ./global_errmsg_buf.h:4:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 4 | char * _HDF5Array_global_errmsg_buf(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c h5summarize.c -o h5summarize.o In file included from h5summarize.c:8: ./global_errmsg_buf.h:4:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 4 | char * _HDF5Array_global_errmsg_buf(); | ^ | void 1 warning generated. clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_HDF5Array.c -o R_init_HDF5Array.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o HDF5Array.so S4Vectors_stubs.o H5File.o global_errmsg_buf.o H5DSetDescriptor.o h5dimscales.o uaselection.o h5mread_helpers.o h5mread_startscounts.o ChunkIterator.o h5mread_index.o h5mread_sparse.o h5mread.o h5summarize.o R_init_HDF5Array.o /home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/lib/libhdf5_hl.a /home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/lib/libhdf5.a -lcrypto -lcurl -lsz -laec -lz -ldl -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpW8xF9Z/R.INSTALL50b7662f4375d/HDF5Array/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-HDF5Array/00new/HDF5Array/libs ** R ** inst ** byte-compile and prepare package for lazy loading /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7fdbd49a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7fdbd49a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7fdbd4b02616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7fdbd4aaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7fdbd4aa921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7fdbd4aab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7fdbd4aa9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7fdbd4b03636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7fdbd4aaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7fdbd4aa921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7fdbd4ab3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7fdbd4aaf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7fdbd4aa9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7fdbd4aa9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7fdbd4aab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #15 0x7fdbd4b4aa64 in getvar /home/hornik/src/R/src/main/eval.c:5839:6 #16 0x7fdbd4b1a2a5 in bcEval_loop /home/hornik/src/R/src/main/eval.c:7852:20 #17 0x7fdbd4aaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #18 0x7fdbd4aa921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #19 0x7fdbd4ab3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #20 0x7fdbd4aaf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #21 0x7fdbd4aa9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #22 0x7fdbd4aa9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #23 0x7fdbd4bf4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #24 0x7fdbd4bf7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #25 0x7fdbd4bf7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #26 0x7fdbd4bf783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #27 0x55c5e4227b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #28 0x7fdbd3d4dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #29 0x7fdbd3d4de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #30 0x55c5e414c360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7fdbb12bed71 in H5I_dec_ref /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7fdbb1679348 in H5T__path_find_real /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7fdbb16678a3 in H5T__register /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7fdbb164f950 in H5T__register_int /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7fdbb16465af in H5T__init_package /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7fdbb163f3a0 in H5T_init /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7fdbb0ea75d2 in H5_init_library /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7fdbb0ead7bc in H5open /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7fdbb0e976d6 in _H5constants /home/hornik/tmp/scratch/Rtmpl0CtA5/R.INSTALL505a32ecfab92/rhdf5/src/H5constants.c:52:35 #9 0x7fdbd4949cca in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #10 0x7fdbd49a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #11 0x7fdbd4af9c36 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #12 0x7fdbd4aaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #13 0x7fdbd4aa921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #14 0x7fdbd4ab3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #15 0x7fdbd4aaf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #16 0x7fdbd4aa9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #17 0x7fdbd4aa9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #18 0x7fdbd4aab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #19 0x7fdbd4b4aa64 in getvar /home/hornik/src/R/src/main/eval.c:5839:6 #20 0x7fdbd4b1a2a5 in bcEval_loop /home/hornik/src/R/src/main/eval.c:7852:20 #21 0x7fdbd4aaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #22 0x7fdbd4aa921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #23 0x7fdbd4ab3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #24 0x7fdbd4aaf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #25 0x7fdbd4aa9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #26 0x7fdbd4aa9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #27 0x7fdbd4bf4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #28 0x7fdbd4bf7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #29 0x7fdbd4bf7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #30 0x7fdbd4bf783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #31 0x55c5e4227b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #32 0x7fdbd3d4dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #33 0x7fdbd3d4de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #34 0x55c5e414c360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7fdbb12ba48a in H5I__clear_type_cb /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7fdbb161e4b7 in H5SL_try_free_safe /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7fdbb12b9bc3 in H5I_clear_type /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7fdbb1651ef2 in H5T_top_term_package /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7fdbb0ea8771 in H5_term_library /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7fdbd3d661a0 in __run_exit_handlers stdlib/exit.c:108:8 #6 0x7fdbd3d66259 in exit stdlib/exit.c:138:3 #7 0x7fdbd4faaf1c in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #8 0x7fdbd4fb5237 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #9 0x7fdbd4bf75c4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #10 0x7fdbd4bf75c4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #11 0x7fdbd4bf783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #12 0x55c5e4227b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #13 0x7fdbd3d4dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #14 0x7fdbd3d4de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #15 0x55c5e414c360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7fefb67a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7fefb67a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7fefb6902616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7fefb68aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7fefb68a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7fefb68ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7fefb68a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7fefb6903636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7fefb68aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7fefb68a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7fefb68b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7fefb68af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7fefb68a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7fefb68a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7fefb69f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #15 0x7fefb69f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #16 0x7fefb69f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #17 0x7fefb69f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #18 0x55b90c7abb84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #19 0x7fefb5c33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #20 0x7fefb5c33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #21 0x55b90c6d0360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7fef932bed71 in H5I_dec_ref /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7fef93679348 in H5T__path_find_real /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7fef936678a3 in H5T__register /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7fef9364f950 in H5T__register_int /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7fef936465af in H5T__init_package /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7fef9363f3a0 in H5T_init /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7fef92ea75d2 in H5_init_library /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7fef92ead7bc in H5open /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7fef92e976d6 in _H5constants /home/hornik/tmp/scratch/Rtmpl0CtA5/R.INSTALL505a32ecfab92/rhdf5/src/H5constants.c:52:35 #9 0x7fefb6749cca in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #10 0x7fefb67a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #11 0x7fefb68f9c36 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #12 0x7fefb68aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #13 0x7fefb68a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #14 0x7fefb68b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #15 0x7fefb68af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #16 0x7fefb68a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #17 0x7fefb68a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #18 0x7fefb69f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #19 0x7fefb69f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #20 0x7fefb69f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #21 0x7fefb69f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #22 0x55b90c7abb84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #23 0x7fefb5c33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #24 0x7fefb5c33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #25 0x55b90c6d0360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7fef932ba48a in H5I__clear_type_cb /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7fef9361e4b7 in H5SL_try_free_safe /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7fef932b9bc3 in H5I_clear_type /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7fef93651ef2 in H5T_top_term_package /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7fef92ea8771 in H5_term_library /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7fefb5c4c1a0 in __run_exit_handlers stdlib/exit.c:108:8 #6 0x7fefb5c4c259 in exit stdlib/exit.c:138:3 #7 0x7fefb6daaf1c in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #8 0x7fefb6db5237 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #9 0x7fefb69f75c4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #10 0x7fefb69f75c4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #11 0x7fefb69f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #12 0x55b90c7abb84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #13 0x7fefb5c33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #14 0x7fefb5c33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #15 0x55b90c6d0360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f9bf2ba1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f9bf2ba302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f9bf2d02616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f9bf2caab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f9bf2ca921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f9bf2cab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f9bf2ca9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f9bf2d03636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f9bf2caab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f9bf2ca921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f9bf2cb3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7f9bf2caf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7f9bf2ca9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7f9bf2ca9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7f9bf2df4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #15 0x7f9bf2df7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #16 0x7f9bf2df7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #17 0x7f9bf2df783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #18 0x55ff4faddb84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #19 0x7f9bf1f4dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #20 0x7f9bf1f4de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #21 0x55ff4fa02360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f9bcf4bed71 in H5I_dec_ref /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7f9bcf879348 in H5T__path_find_real /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7f9bcf8678a3 in H5T__register /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7f9bcf84f950 in H5T__register_int /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7f9bcf8465af in H5T__init_package /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7f9bcf83f3a0 in H5T_init /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7f9bcf0a75d2 in H5_init_library /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7f9bcf0ad7bc in H5open /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7f9bcf0976d6 in _H5constants /home/hornik/tmp/scratch/Rtmpl0CtA5/R.INSTALL505a32ecfab92/rhdf5/src/H5constants.c:52:35 #9 0x7f9bf2b49cca in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #10 0x7f9bf2ba302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #11 0x7f9bf2cf9c36 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #12 0x7f9bf2caab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #13 0x7f9bf2ca921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #14 0x7f9bf2cb3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #15 0x7f9bf2caf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #16 0x7f9bf2ca9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #17 0x7f9bf2ca9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #18 0x7f9bf2df4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #19 0x7f9bf2df7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #20 0x7f9bf2df7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #21 0x7f9bf2df783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #22 0x55ff4faddb84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #23 0x7f9bf1f4dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #24 0x7f9bf1f4de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #25 0x55ff4fa02360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f9bcf4ba48a in H5I__clear_type_cb /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7f9bcf81e4b7 in H5SL_try_free_safe /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7f9bcf4b9bc3 in H5I_clear_type /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7f9bcf851ef2 in H5T_top_term_package /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7f9bcf0a8771 in H5_term_library /home/hornik/tmp/scratch/Rtmp5pzlPg/R.INSTALL479ac5e06da89/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7f9bf1f661a0 in __run_exit_handlers stdlib/exit.c:108:8 #6 0x7f9bf1f66259 in exit stdlib/exit.c:138:3 #7 0x7f9bf31aaf1c in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #8 0x7f9bf31b5237 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #9 0x7f9bf2df75c4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #10 0x7f9bf2df75c4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #11 0x7f9bf2df783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #12 0x55ff4faddb84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #13 0x7f9bf1f4dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #14 0x7f9bf1f4de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #15 0x55ff4fa02360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** testing if installed package keeps a record of temporary installation path * DONE (HDF5Array) * installing *source* package ‘SummarizedExperiment’ ... ** package ‘SummarizedExperiment’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f2bb81a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f2bb81a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f2bb8302616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f2bb82aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f2bb82a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f2bb82ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f2bb82a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f2bb8303636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f2bb82aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f2bb82a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f2bb82b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7f2bb82af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7f2bb82a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7f2bb82a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7f2bb82ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #15 0x7f2bb834aa64 in getvar /home/hornik/src/R/src/main/eval.c:5839:6 #16 0x7f2bb831a2a5 in bcEval_loop /home/hornik/src/R/src/main/eval.c:7852:20 #17 0x7f2bb82aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #18 0x7f2bb82a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #19 0x7f2bb82b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #20 0x7f2bb82af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #21 0x7f2bb82a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #22 0x7f2bb82a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #23 0x7f2bb83f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #24 0x7f2bb83f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #25 0x7f2bb83f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #26 0x7f2bb83f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #27 0x55f91288eb84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #28 0x7f2bb7633d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #29 0x7f2bb7633e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #30 0x55f9127b3360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7fe79c5a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7fe79c5a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7fe79c702616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7fe79c6aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7fe79c6a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7fe79c6ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7fe79c6a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7fe79c703636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7fe79c6aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7fe79c6a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7fe79c6b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7fe79c6af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7fe79c6a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7fe79c6a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7fe79c7f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #15 0x7fe79c7f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #16 0x7fe79c7f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #17 0x7fe79c7f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #18 0x5647d4f58b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #19 0x7fe79ba33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #20 0x7fe79ba33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #21 0x5647d4e7d360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** testing if installed package can be loaded from final location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f0c84fa1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f0c84fa302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f0c85102616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f0c850aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f0c850a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f0c850ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f0c850a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f0c85103636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f0c850aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f0c850a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f0c850b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7f0c850af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7f0c850a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7f0c850a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7f0c851f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #15 0x7f0c851f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #16 0x7f0c851f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #17 0x7f0c851f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #18 0x55d9c5a4cb84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #19 0x7f0c8434dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #20 0x7f0c8434de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #21 0x55d9c5971360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** testing if installed package keeps a record of temporary installation path * DONE (SummarizedExperiment) begin installing package ‘SingleCellExperiment’ * installing *source* package ‘Seurat’ ... ** package ‘Seurat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 18.1.8 (12)’ using C++ compiler: ‘Debian clang version 18.1.8 (12)’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpaeYSf3/R.INSTALL50a466e95307c/Seurat/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ModularityOptimizer.cpp -o ModularityOptimizer.o ModularityOptimizer.cpp:216:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 216 | for (; i <= nNodes; i++) | ^ ModularityOptimizer.cpp:204:3: note: previous statement is here 204 | for (size_t j = 0; j < edge[0].size(); j++) | ^ ModularityOptimizer.cpp:395:11: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 395 | k++; | ^ ModularityOptimizer.cpp:387:9: note: previous statement is here 387 | for (int l = firstNeighborIndex[node[k]]; l < firstNeighborIndex[node[k] + 1]; l++) | ^ ModularityOptimizer.cpp:399:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 399 | clustering.orderClustersByNNodes(); | ^ ModularityOptimizer.cpp:377:3: note: previous statement is here 377 | for (int i = 0; i < nNodes; i++) | ^ ModularityOptimizer.cpp:436:9: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 436 | subnetwork.firstNeighborIndex[i + 1] = subnetwork.nEdges; | ^ ModularityOptimizer.cpp:429:7: note: previous statement is here 429 | for (int k = firstNeighborIndex[j]; k < firstNeighborIndex[j + 1]; k++) | ^ ModularityOptimizer.cpp:721:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 721 | if (i >= 0) | ^ ModularityOptimizer.cpp:710:3: note: previous statement is here 710 | for (int j = 0; j < clustering->nClusters; j++) | ^ ModularityOptimizer.cpp:726:9: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 726 | if (cluster == clustering->nClusters - 1) | ^ ModularityOptimizer.cpp:723:7: note: previous statement is here 723 | for (int j = 0; j < network->nNodes; j++) | ^ ModularityOptimizer.cpp:747:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 747 | if (i >= 0) | ^ ModularityOptimizer.cpp:740:5: note: previous statement is here 740 | for (int k = 0; k < vosClusteringTechnique.clustering->nClusters; k++) | ^ ModularityOptimizer.cpp:771:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 771 | IVector firstNeighborIndex(nNodes + 1); | ^ ModularityOptimizer.cpp:764:3: note: previous statement is here 764 | for (size_t i = 0; i < node1.size(); i++) | ^ ModularityOptimizer.cpp:796:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 796 | if (modularityFunction == 1) | ^ ModularityOptimizer.cpp:783:5: note: previous statement is here 783 | for (size_t i = 0; i < node1.size(); i++) | ^ ModularityOptimizer.cpp:761:7: warning: unused variable 'n1_max' [-Wunused-variable] 761 | int n1_max = *std::max_element(node1.cbegin(), node1.cend()); | ^~~~~~ ModularityOptimizer.cpp:762:7: warning: unused variable 'n2_max' [-Wunused-variable] 762 | int n2_max = *std::max_element(node2.cbegin(), node2.cend()); | ^~~~~~ 11 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RModularityOptimizer.cpp -o RModularityOptimizer.o In file included from RModularityOptimizer.cpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RModularityOptimizer.cpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RModularityOptimizer.cpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RModularityOptimizer.cpp:9: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ RModularityOptimizer.cpp:165:7: warning: misleading indentation; statement is not part of the previous 'else' [-Wmisleading-indentation] 165 | Rprintf("Number of communities: %d\n", clustering->getNClusters()); | ^ RModularityOptimizer.cpp:163:5: note: previous statement is here 163 | else | ^ 6 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c data_manipulation.cpp -o data_manipulation.o In file included from data_manipulation.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from data_manipulation.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from data_manipulation.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from data_manipulation.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fast_NN_dist.cpp -o fast_NN_dist.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c integration.cpp -o integration.o In file included from integration.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from integration.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from integration.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from integration.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c snn.cpp -o snn.o In file included from snn.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from snn.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from snn.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from snn.cpp:1: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stats.cpp -o stats.o clang-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppEigen/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c valid_pointer.c -o valid_pointer.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o Seurat.so ModularityOptimizer.o RModularityOptimizer.o RcppExports.o data_manipulation.o fast_NN_dist.o integration.o snn.o stats.o valid_pointer.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpaeYSf3/R.INSTALL50a466e95307c/Seurat/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Seurat/00new/Seurat/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Seurat) * installing *source* package ‘SingleCellExperiment’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7fa2463a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7fa2463a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7fa246502616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7fa2464aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7fa2464a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7fa2464ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7fa2464a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7fa246503636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7fa2464aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7fa2464a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7fa2464b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7fa2464af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7fa2464a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7fa2464a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7fa2464ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #15 0x7fa24654aa64 in getvar /home/hornik/src/R/src/main/eval.c:5839:6 #16 0x7fa24651a2a5 in bcEval_loop /home/hornik/src/R/src/main/eval.c:7852:20 #17 0x7fa2464aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #18 0x7fa2464a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #19 0x7fa2464b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #20 0x7fa2464af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #21 0x7fa2464a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #22 0x7fa2464a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #23 0x7fa2465f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #24 0x7fa2465f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #25 0x7fa2465f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #26 0x7fa2465f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #27 0x55ab222d6b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #28 0x7fa24574dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #29 0x7fa24574de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #30 0x55ab221fb360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7fee27ba1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7fee27ba302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7fee27d02616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7fee27caab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7fee27ca921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7fee27cab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7fee27ca9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7fee27d03636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7fee27caab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7fee27ca921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7fee27cb3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7fee27caf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7fee27ca9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7fee27ca9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7fee27df4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #15 0x7fee27df7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #16 0x7fee27df7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #17 0x7fee27df783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #18 0x5626fec9eb84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #19 0x7fee27033d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #20 0x7fee27033e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #21 0x5626febc3360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** testing if installed package can be loaded from final location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f71377a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f71377a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f7137902616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f71378aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f71378a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f71378ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f71378a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f7137903636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f71378aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f71378a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f71378b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #11 0x7f71378af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #12 0x7f71378a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #13 0x7f71378a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #14 0x7f71379f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #15 0x7f71379f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #16 0x7f71379f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #17 0x7f71379f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #18 0x561a0d9f3b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #19 0x7f7136c33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #20 0x7f7136c33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #21 0x561a0d918360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** testing if installed package keeps a record of temporary installation path * DONE (SingleCellExperiment) * installing *source* package ‘beachmat’ ... ** package ‘beachmat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpr21pmR/R.INSTALL50b79d850e6f/beachmat/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c delayed_isometric_binary.cpp -o delayed_isometric_binary.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c delayed_isometric_math.cpp -o delayed_isometric_math.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c delayed_isometric_unary.cpp -o delayed_isometric_unary.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c delayed_other.cpp -o delayed_other.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dense_matrix.cpp -o dense_matrix.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fragment_sparse_rows.cpp -o fragment_sparse_rows.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sparse_matrix.cpp -o sparse_matrix.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c tatami_utils.cpp -o tatami_utils.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unknown_matrix.cpp -o unknown_matrix.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o beachmat.so RcppExports.o delayed_isometric_binary.o delayed_isometric_math.o delayed_isometric_unary.o delayed_other.o dense_matrix.o fragment_sparse_rows.o sparse_matrix.o tatami_utils.o unknown_matrix.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpr21pmR/R.INSTALL50b79d850e6f/beachmat/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-beachmat/00new/beachmat/libs ** R ** inst ** byte-compile and prepare package for lazy loading /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f70103a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f70103a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f7010502616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f70104aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f70104a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f70104ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f70104a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f7010503636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f70104aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f70104a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f70104ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #11 0x7f70104a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #12 0x7f7010503636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #13 0x7f70104aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #14 0x7f70104a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #15 0x7f70104ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #16 0x7f70104a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #17 0x7f7010503636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #18 0x7f70104aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #19 0x7f70104a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #20 0x7f70104b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #21 0x7f70104af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #22 0x7f70104a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #23 0x7f70104a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #24 0x7f70105f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #25 0x7f70105f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #26 0x7f70105f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #27 0x7f70105f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #28 0x55c796866b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #29 0x7f700f74dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #30 0x7f700f74de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #31 0x55c79678b360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f7fbb3a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f7fbb3a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f7fbb502616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f7fbb4aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f7fbb4a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f7fbb4ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f7fbb4a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f7fbb503636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f7fbb4aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f7fbb4a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f7fbb4ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #11 0x7f7fbb4a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #12 0x7f7fbb503636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #13 0x7f7fbb4aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #14 0x7f7fbb4a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #15 0x7f7fbb4ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #16 0x7f7fbb4a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #17 0x7f7fbb503636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #18 0x7f7fbb4aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #19 0x7f7fbb4a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #20 0x7f7fbb4b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #21 0x7f7fbb4af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #22 0x7f7fbb4a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #23 0x7f7fbb4a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #24 0x7f7fbb5f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #25 0x7f7fbb5f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #26 0x7f7fbb5f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #27 0x7f7fbb5f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #28 0x5624c2debb84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #29 0x7f7fba833d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #30 0x7f7fba833e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #31 0x5624c2d10360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f75815a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f75815a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f7581702616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f75816aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f75816a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f75816ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f75816a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f7581703636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f75816aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f75816a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f75816ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #11 0x7f75816a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #12 0x7f7581703636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #13 0x7f75816aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #14 0x7f75816a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #15 0x7f75816ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #16 0x7f75816a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #17 0x7f7581703636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #18 0x7f75816aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #19 0x7f75816a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #20 0x7f75816b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #21 0x7f75816af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #22 0x7f75816a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #23 0x7f75816a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #24 0x7f75817f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #25 0x7f75817f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #26 0x7f75817f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #27 0x7f75817f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #28 0x5574c102cb84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #29 0x7f7580a33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #30 0x7f7580a33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #31 0x5574c0f51360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** testing if installed package keeps a record of temporary installation path * DONE (beachmat) begin installing package ‘glmGamPoi’ * installing *source* package ‘glmGamPoi’ ... ** package ‘glmGamPoi’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (12)’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHQrgL5/R.INSTALL513e011360d9/glmGamPoi/src' clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/beachmat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c RcppExports.cpp -o RcppExports.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/beachmat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c beta_estimation.cpp -o beta_estimation.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/beachmat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c deviance.cpp -o deviance.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/beachmat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c overdispersion.cpp -o overdispersion.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/beachmat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c utils.cpp -o utils.o clang++-18 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o glmGamPoi.so RcppExports.o beta_estimation.o deviance.o overdispersion.o utils.o -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHQrgL5/R.INSTALL513e011360d9/glmGamPoi/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-glmGamPoi/00new/glmGamPoi/libs ** R ** inst ** byte-compile and prepare package for lazy loading /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f9edf9a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f9edf9a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f9edfb02616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f9edfaaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f9edfaa921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f9edfaab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f9edfaa9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f9edfb03636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f9edfaaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f9edfaa921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f9edfaab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #11 0x7f9edfaa9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #12 0x7f9edfb03636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #13 0x7f9edfaaab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #14 0x7f9edfaa921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #15 0x7f9edfab3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #16 0x7f9edfaaf5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #17 0x7f9edfaa9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #18 0x7f9edfaa9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #19 0x7f9edfbf4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #20 0x7f9edfbf7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #21 0x7f9edfbf7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #22 0x7f9edfbf783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #23 0x556c862a9b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #24 0x7f9edee33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #25 0x7f9edee33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #26 0x556c861ce360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f073b7a1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f073b7a302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f073b902616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f073b8aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f073b8a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f073b8ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f073b8a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f073b903636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f073b8aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f073b8a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f073b8ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #11 0x7f073b8a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #12 0x7f073b903636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #13 0x7f073b8aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #14 0x7f073b8a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #15 0x7f073b8b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #16 0x7f073b8af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #17 0x7f073b8a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #18 0x7f073b8a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #19 0x7f073b9f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #20 0x7f073b9f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #21 0x7f073b9f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #22 0x7f073b9f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #23 0x561e8da8db84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #24 0x7f073ab4dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #25 0x7f073ab4de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #26 0x561e8d9b2360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location /home/hornik/src/R/src/main/dotcode.c:751:11: runtime error: call to function externalptr_new through pointer to incorrect function type 'struct SEXPREC *(*)(void)' /home/hornik/tmp/scratch/RtmpFXpVSH/R.INSTALL4f3f4779bfcf1/XVector/src/SharedVector_class.c:70: note: externalptr_new defined here #0 0x7f3ce8fa1d26 in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #1 0x7f3ce8fa302c in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #2 0x7f3ce9102616 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8057:12 #3 0x7f3ce90aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #4 0x7f3ce90a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #5 0x7f3ce90ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #6 0x7f3ce90a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #7 0x7f3ce9103636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #8 0x7f3ce90aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #9 0x7f3ce90a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #10 0x7f3ce90ab1bd in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #11 0x7f3ce90a9346 in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #12 0x7f3ce9103636 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #13 0x7f3ce90aab64 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #14 0x7f3ce90a921e in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #15 0x7f3ce90b3db0 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #16 0x7f3ce90af5f7 in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #17 0x7f3ce90a9bdb in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #18 0x7f3ce90a9bdb in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #19 0x7f3ce91f4765 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #20 0x7f3ce91f7770 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #21 0x7f3ce91f7594 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #22 0x7f3ce91f783a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #23 0x55dc99957b84 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #24 0x7f3ce834dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #25 0x7f3ce834de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #26 0x55dc9987c360 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b360) (BuildId: 71b7cc9351bcc02083f9df16c056d5fba06ed51c) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior /home/hornik/src/R/src/main/dotcode.c:751:11 ** testing if installed package keeps a record of temporary installation path * DONE (glmGamPoi) checking scregclust_0.2.1.tar.gz ... Depends: Package: scregclust Depends: R (>= 3.5.0) Imports: Matrix, stats, methods, utils, reshape, igraph, graphics, grid, cli, prettyunits, ggplot2, rlang, Rcpp (>= 1.0.8) LinkingTo: Rcpp, RcppEigen Timings: user system elapsed scregclust 278.917 24.028 307.512 Results: Check status summary: OK Source packages 1 Check results summary: scregclust ... OK