* installing *source* package ‘scellpam’ ... ** this is package ‘scellpam’ version ‘1.4.7’ ** using staged installation ** libs using C++ compiler: ‘Debian clang version 21.1.8 (3+b1)’ clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c biodatatojmat.cpp -o biodatatojmat.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c buildresults.cpp -o buildresults.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c closecases.cpp -o closecases.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c csvtojmat.cpp -o csvtojmat.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c debugpar.cpp -o debugpar.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c diftimehelper.cpp -o diftimehelper.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c dissimmat.cpp -o dissimmat.o dissimmat.cpp:223:12: warning: variable 'numsel' set but not used [-Wunused-but-set-variable] 223 | indextype numsel=0; | ^ 1 warning generated. clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c dissimmat_full.cpp -o dissimmat_full.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c dissimmat_sparse.cpp -o dissimmat_sparse.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c fastpam.cpp -o fastpam.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c filtermat.cpp -o filtermat.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c filternames.cpp -o filternames.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c filtersil.cpp -o filtersil.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c fullmatrix.cpp -o fullmatrix.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c jmatrix.cpp -o jmatrix.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c jmatrixaux.cpp -o jmatrixaux.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c mainfastpam.cpp -o mainfastpam.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c matgetcols.cpp -o matgetcols.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c matgetdiag.cpp -o matgetdiag.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c matgetrows.cpp -o matgetrows.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c matinfo.cpp -o matinfo.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c matmetadata.cpp -o matmetadata.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c matwrite.cpp -o matwrite.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c memhelper.cpp -o memhelper.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c silhouette.cpp -o silhouette.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c sparsematrix.cpp -o sparsematrix.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c symmetricmatrix.cpp -o symmetricmatrix.o clang++-21 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O3 -Wall -pedantic -c threadhelper.cpp -o threadhelper.o clang++-21 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-clang-21/lib -Wl,-O1 -o scellpam.so RcppExports.o biodatatojmat.o buildresults.o closecases.o csvtojmat.o debugpar.o diftimehelper.o dissimmat.o dissimmat_full.o dissimmat_sparse.o fastpam.o filtermat.o filternames.o filtersil.o fullmatrix.o jmatrix.o jmatrixaux.o mainfastpam.o matgetcols.o matgetdiag.o matgetrows.o matinfo.o matmetadata.o matwrite.o memhelper.o silhouette.o sparsematrix.o symmetricmatrix.o threadhelper.o -lpthread -O2 -L/home/hornik/tmp/R-d-clang-21/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/scellpam.Rcheck/00LOCK-scellpam/00new/scellpam/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scellpam)