* using log directory ‘/srv/hornik/tmp/CRAN/scaDA.Rcheck’
* using R Under development (unstable) (2024-01-10 r85799)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (3)
    Debian flang-new version 17.0.6 (3)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘scaDA/DESCRIPTION’ ... OK
* this is package ‘scaDA’ version ‘1.0.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Fengdi Zhao <fengdizhao@ufl.edu>’

New submission

Possibly misspelled words in DESCRIPTION:
  ATAC (8:26)
  scATAC (8:52, 8:179, 8:298, 8:899)
  scaDA (8:777, 8:987)

The Title field should be in title case. Current version is:
‘R package for Differential Analysis of Single-Cell Chromatin Accessibility Sequencing Data’
In title case that is:
‘R Package for Differential Analysis of Single-Cell Chromatin Accessibility Sequencing Data’

Size of tarball: 37962798 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘scaDA’ can be installed ... [37s/37s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
* checking whether the package can be unloaded cleanly ... [3s/3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
* checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
* checking loading without being on the library search path ... [3s/3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s/15s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [13s/13s] WARNING
  Error loading dataset 'HumanBrain':
   Error in .requirePackage(package) : 
    unable to find required package 'Signac'
  
  The dataset(s) may use package(s) not declared in Depends/Imports.
* checking LazyData ... WARNING
  LazyData DB of 48.5 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for code which exercises the package ... WARNING
No examples, no tests, no vignettes
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 WARNINGs, 1 NOTE