installing dependencies ‘scRNAseq’ also installing the dependencies ‘alabaster.ranges’, ‘BiocVersion’, ‘AnnotationFilter’, ‘ProtGenerics’, ‘alabaster.schemas’, ‘alabaster.se’, ‘ExperimentHub’, ‘AnnotationHub’, ‘ensembldb’, ‘alabaster.base’, ‘alabaster.matrix’, ‘alabaster.sce’, ‘gypsum’ begin installing package ‘BiocVersion’ begin installing package ‘AnnotationFilter’ begin installing package ‘ProtGenerics’ begin installing package ‘alabaster.schemas’ begin installing package ‘gypsum’ * installing *source* package ‘BiocVersion’ ... ** this is package ‘BiocVersion’ version ‘3.21.1’ ** using staged installation ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocVersion) begin installing package ‘AnnotationHub’ * installing *source* package ‘alabaster.schemas’ ... ** this is package ‘alabaster.schemas’ version ‘1.8.0’ ** using staged installation ** inst ** help No man pages found in package ‘alabaster.schemas’ *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (alabaster.schemas) begin installing package ‘alabaster.base’ * installing *source* package ‘ProtGenerics’ ... ** this is package ‘ProtGenerics’ version ‘1.40.0’ ** using staged installation ** R ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘smooth’ in package ‘ProtGenerics’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ProtGenerics) * installing *source* package ‘gypsum’ ... ** this is package ‘gypsum’ version ‘1.4.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gypsum) * installing *source* package ‘AnnotationFilter’ ... ** this is package ‘AnnotationFilter’ version ‘1.32.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AnnotationFilter) begin installing package ‘ensembldb’ * installing *source* package ‘AnnotationHub’ ... ** this is package ‘AnnotationHub’ version ‘3.16.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AnnotationHub) begin installing package ‘ExperimentHub’ * installing *source* package ‘ExperimentHub’ ... ** this is package ‘ExperimentHub’ version ‘2.16.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ExperimentHub) * installing *source* package ‘ensembldb’ ... ** this is package ‘ensembldb’ version ‘2.32.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function from function ‘.cds_for_id2’ in package ‘ensembldb’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ensembldb) * installing *source* package ‘alabaster.base’ ... ** this is package ‘alabaster.base’ version ‘1.8.0’ ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRKtwqg/R.INSTALL65564406a3928/alabaster.base/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c check_csv.cpp -o check_csv.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c check_list.cpp -o check_list.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c choose_numeric_missing_placeholder.cpp -o choose_numeric_missing_placeholder.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c is_rfc3339.cpp -o is_rfc3339.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c load_csv.cpp -o load_csv.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c load_list.cpp -o load_list.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c validate.cpp -o validate.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/_validate.hpp:12, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/takane.hpp:4, from validate.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/simple_list.hpp: In function ‘size_t takane::simple_list::height(const std::filesystem::__cxx11::path&, const takane::ObjectMetadata&, takane::Options&)’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/simple_list.hpp:145:17: warning: possibly dangling reference to a temporary [-Wdangling-reference] 145 | const auto& metamap = internal_json::extract_typed_object_from_metadata(metadata.other, "simple_list"); | ^~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/simple_list.hpp:145:76: note: the temporary was destroyed at the end of the full expression ‘takane::internal_json::extract_typed_object_from_metadata(metadata.takane::ObjectMetadata::other, std::__cxx11::basic_string(((const char*)"simple_list"), std::allocator()))’ 145 | const auto& metamap = internal_json::extract_typed_object_from_metadata(metadata.other, "simple_list"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/_validate.hpp:22: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/summarized_experiment.hpp: In function ‘size_t takane::summarized_experiment::height(const std::filesystem::__cxx11::path&, const takane::ObjectMetadata&, takane::Options&)’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/summarized_experiment.hpp:124:17: warning: possibly dangling reference to a temporary [-Wdangling-reference] 124 | const auto& semap = internal_json::extract_object(metadata.other, "summarized_experiment"); | ^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/summarized_experiment.hpp:124:54: note: the temporary was destroyed at the end of the full expression ‘takane::internal_json::extract_object(metadata.takane::ObjectMetadata::other, std::__cxx11::basic_string(((const char*)"summarized_experiment"), std::allocator()))’ 124 | const auto& semap = internal_json::extract_object(metadata.other, "summarized_experiment"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/summarized_experiment.hpp: In function ‘std::vector takane::summarized_experiment::dimensions(const std::filesystem::__cxx11::path&, const takane::ObjectMetadata&, takane::Options&)’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/summarized_experiment.hpp:137:17: warning: possibly dangling reference to a temporary [-Wdangling-reference] 137 | const auto& semap = internal_json::extract_object(metadata.other, "summarized_experiment"); | ^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/summarized_experiment.hpp:137:54: note: the temporary was destroyed at the end of the full expression ‘takane::internal_json::extract_object(metadata.takane::ObjectMetadata::other, std::__cxx11::basic_string(((const char*)"summarized_experiment"), std::allocator()))’ 137 | const auto& semap = internal_json::extract_object(metadata.other, "summarized_experiment"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/_validate.hpp:27: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/sequence_string_set.hpp: In function ‘size_t takane::sequence_string_set::height(const std::filesystem::__cxx11::path&, const takane::ObjectMetadata&, takane::Options&)’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/sequence_string_set.hpp:366:17: warning: possibly dangling reference to a temporary [-Wdangling-reference] 366 | const auto& obj = internal_json::extract_typed_object_from_metadata(metadata.other, "sequence_string_set"); | ^~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/sequence_string_set.hpp:366:72: note: the temporary was destroyed at the end of the full expression ‘takane::internal_json::extract_typed_object_from_metadata(metadata.takane::ObjectMetadata::other, std::__cxx11::basic_string(((const char*)"sequence_string_set"), std::allocator()))’ 366 | const auto& obj = internal_json::extract_typed_object_from_metadata(metadata.other, "sequence_string_set"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/_validate.hpp:40: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/vcf_experiment.hpp: In function ‘size_t takane::vcf_experiment::height(const std::filesystem::__cxx11::path&, const takane::ObjectMetadata&, takane::Options&)’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/vcf_experiment.hpp:241:17: warning: possibly dangling reference to a temporary [-Wdangling-reference] 241 | const auto& vcfmap = internal_json::extract_typed_object_from_metadata(metadata.other, "vcf_experiment"); | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/vcf_experiment.hpp:241:75: note: the temporary was destroyed at the end of the full expression ‘takane::internal_json::extract_typed_object_from_metadata(metadata.takane::ObjectMetadata::other, std::__cxx11::basic_string(((const char*)"vcf_experiment"), std::allocator()))’ 241 | const auto& vcfmap = internal_json::extract_typed_object_from_metadata(metadata.other, "vcf_experiment"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/vcf_experiment.hpp: In function ‘std::vector takane::vcf_experiment::dimensions(const std::filesystem::__cxx11::path&, const takane::ObjectMetadata&, takane::Options&)’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/vcf_experiment.hpp:253:17: warning: possibly dangling reference to a temporary [-Wdangling-reference] 253 | const auto& vcfmap = internal_json::extract_typed_object_from_metadata(metadata.other, "vcf_experiment"); | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/vcf_experiment.hpp:253:75: note: the temporary was destroyed at the end of the full expression ‘takane::internal_json::extract_typed_object_from_metadata(metadata.takane::ObjectMetadata::other, std::__cxx11::basic_string(((const char*)"vcf_experiment"), std::allocator()))’ 253 | const auto& vcfmap = internal_json::extract_typed_object_from_metadata(metadata.other, "vcf_experiment"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/chihaya/validate.hpp:13, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/chihaya/chihaya.hpp:10, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/utils_public.hpp:13, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/takane/_validate.hpp:9: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/chihaya/sparse_matrix.hpp: In function ‘void chihaya::sparse_matrix::internal::validate_indices(const H5::DataSet&, const std::vector&, size_t, size_t, bool) [with Index_ = int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/chihaya/sparse_matrix.hpp:51:32: warning: ‘previous’ may be used uninitialized [-Wmaybe-uninitialized] 51 | if (x > start && i <= previous) { | ~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/chihaya/sparse_matrix.hpp:45:16: note: ‘previous’ was declared here 45 | Index_ previous; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/chihaya/sparse_matrix.hpp: In function ‘void chihaya::sparse_matrix::internal::validate_indices(const H5::DataSet&, const std::vector&, size_t, size_t, bool) [with Index_ = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/chihaya/sparse_matrix.hpp:51:32: warning: ‘previous’ may be used uninitialized [-Wmaybe-uninitialized] 51 | if (x > start && i <= previous) { | ~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include/chihaya/sparse_matrix.hpp:45:16: note: ‘previous’ was declared here 45 | Index_ previous; | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vls.cpp -o vls.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o alabaster.base.so RcppExports.o check_csv.o check_list.o choose_numeric_missing_placeholder.o is_rfc3339.o load_csv.o load_list.o validate.o vls.o /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhdf5lib/lib/libhdf5_cpp.a /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rhdf5lib/lib/libhdf5.a -lcrypto -lcurl -lsz -laec -lz -ldl -lm -lz -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRKtwqg/R.INSTALL65564406a3928/alabaster.base/src' installing to /home/hornik/tmp/CRAN_special_noSuggests/Library/00LOCK-alabaster.base/00new/alabaster.base/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (alabaster.base) begin installing package ‘alabaster.ranges’ begin installing package ‘alabaster.matrix’ * installing *source* package ‘alabaster.ranges’ ... ** this is package ‘alabaster.ranges’ version ‘1.8.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (alabaster.ranges) * installing *source* package ‘alabaster.matrix’ ... ** this is package ‘alabaster.matrix’ version ‘1.8.0’ ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmcdaiS/R.INSTALL657cc3e87d1a8/alabaster.matrix/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c collect_attributes.cpp -o collect_attributes.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o alabaster.matrix.so RcppExports.o collect_attributes.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmcdaiS/R.INSTALL657cc3e87d1a8/alabaster.matrix/src' installing to /home/hornik/tmp/CRAN_special_noSuggests/Library/00LOCK-alabaster.matrix/00new/alabaster.matrix/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (alabaster.matrix) begin installing package ‘alabaster.se’ * installing *source* package ‘alabaster.se’ ... ** this is package ‘alabaster.se’ version ‘1.8.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (alabaster.se) begin installing package ‘alabaster.sce’ * installing *source* package ‘alabaster.sce’ ... ** this is package ‘alabaster.sce’ version ‘1.8.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (alabaster.sce) begin installing package ‘scRNAseq’ * installing *source* package ‘scRNAseq’ ... ** this is package ‘scRNAseq’ version ‘2.22.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scRNAseq) checking scStability_1.0.3.tar.gz ... Depends: Package: scStability Imports: aricode, future, future.apply, ggplot2, magrittr, pcaPP, rlang, Rtsne, Seurat, stats, uwot, vegan Timings: user system elapsed scStability 34.308 5.11 46.876 Results: Check status summary: NOTE Source packages 1 Check results summary: scStability ... NOTE * checking CRAN incoming feasibility ... [5s/6s] NOTE