* using log directory 'd:/RCompile/CRANincoming/R-devel/scSpatialSIM.Rcheck'
* using R Under development (unstable) (2023-10-05 r85268 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'scSpatialSIM/DESCRIPTION' ... OK
* this is package 'scSpatialSIM' version '0.1.3.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Fridley Lab <fridley.lab@moffitt.org>'

New submission

Possibly misspelled words in DESCRIPTION:
  bivariate (41:286)
  colocalization (41:270)
  scSpatialSIM (41:14)
  spatstat (41:65)
  univariate (41:230)

The Title field should be in title case. Current version is:
'A point pattern simulator for spatial cellular data'
In title case that is:
'A Point Pattern Simulator for Spatial Cellular Data'

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'scSpatialSIM' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'scSpatialSIM-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GenerateDistributions
> ### Title: Generate Characteristic Distributions of Cells
> ### Aliases: GenerateDistributions
> 
> ### ** Examples
> 
> #create simulation object
> spatial_data = CreateSimulationObject(sims = 1, cell_types = 1) %>%
+   #produce the point pattern
+   GenerateSpatialPattern() %>%
+   #make tissues
+   GenerateTissue(density_heatmap = FALSE, step_size = 0.1, cores = 1) %>%
+   #create positive and negative cells
+   GenerateCellPositivity(k = 4, sdmin = 3, sdmax = 5,
+   density_heatmap = FALSE, step_size = 1, cores = 1, probs = c(0.0, 0.1), shift = 0) %>%
+   #convert to a list of spatial data frames
+   CreateSpatialList(single_df = FALSE)
No `window` specified - defaulting to x (0, 10); y (0, 10)
Computing tissue probability
Computing probability for Cell 1
Error in mclapply(X, FUN, ..., mc.cores = mc.cores, mc.preschedule = mc.preschedule,  : 
  'mc.cores' > 1 is not supported on Windows
Calls: %>% -> CreateSpatialList -> <Anonymous> -> mclapply
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... OK
  Running 'testthat.R'
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [295s] ERROR
Error(s) in re-building vignettes:
--- re-building 'a01_Introduction.Rmd' using rmarkdown

Quitting from lines 177-179 [unnamed-chunk-15] (a01_Introduction.Rmd)
Error: processing vignette 'a01_Introduction.Rmd' failed with diagnostics:
'mc.cores' > 1 is not supported on Windows
--- failed re-building 'a01_Introduction.Rmd'

--- re-building 'a02_Using_with_spatialTIME.Rmd' using rmarkdown

Quitting from lines 50-55 [sim_object_export] (a02_Using_with_spatialTIME.Rmd)
Error: processing vignette 'a02_Using_with_spatialTIME.Rmd' failed with diagnostics:
'mc.cores' > 1 is not supported on Windows
--- failed re-building 'a02_Using_with_spatialTIME.Rmd'

--- re-building 'a03_CellAttributes.Rmd' using rmarkdown
--- finished re-building 'a03_CellAttributes.Rmd'

SUMMARY: processing the following files failed:
  'a01_Introduction.Rmd' 'a02_Using_with_spatialTIME.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [17s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 ERRORs, 1 NOTE