* using log directory 'd:/RCompile/CRANincoming/R-devel/scPipeline.Rcheck'
* using R Under development (unstable) (2025-02-24 r87814 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'scPipeline/DESCRIPTION' ... OK
* this is package 'scPipeline' version '0.1.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Viswanadham Sridhara <Sridhara.Omics@gmail.com>'

New submission

Possibly misspelled words in DESCRIPTION:
  asscoiated (9:68)

Size of tarball: 7798365 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  ..pdf
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.

CRAN-pack does not know about
  ..pdf
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'scPipeline' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Author field differs from that derived from Authors@R
  Author:    'Viswanadham Sridhara'
  Authors@R: 'Viswanadham Sridhara [aut, cre] (ORCID: <https://orcid.org/0000-0003-0688-6140>)'

* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  'scReport.Rproj'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [19s] OK
* checking whether the package can be loaded with stated dependencies ... [18s] OK
* checking whether the package can be unloaded cleanly ... [17s] OK
* checking whether the namespace can be loaded with stated dependencies ... [18s] OK
* checking whether the namespace can be unloaded cleanly ... [19s] OK
* checking loading without being on the library search path ... [20s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [79s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  'pbmc3k'
Please use e.g. 'inst/extdata' for non-R data files

* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: 'tidyverse'
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [21s] ERROR
Error(s) in re-building vignettes:
--- re-building 'Seurat_processing.Rmd' using rmarkdown

Quitting from lines 13-17 [setup] (Seurat_processing.Rmd)
Error: processing vignette 'Seurat_processing.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building 'Seurat_processing.Rmd'

SUMMARY: processing the following file failed:
  'Seurat_processing.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [27s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 2 WARNINGs, 5 NOTEs