* using log directory 'd:/RCompile/CRANincoming/R-devel/scMappR.Rcheck'
* using R Under development (unstable) (2025-06-24 r88352 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'scMappR/DESCRIPTION' ... OK
* this is package 'scMappR' version '1.0.12'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [10s] NOTE
Maintainer: 'Dustin Sokolowski <djsokolowski95@gmail.com>'

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  Bioinformatics (6:1690)
  DEGs (6:268, 6:371, 6:468)
  Erdman (6:1473)
  Faykoo (6:1453)
  Goldenberg (6:1522)
  Hou (6:1484)
  Iqab (6:1712)
  NAR (6:1673)
  Zhu (6:1501)
  bioinformatic (6:77)
  celltype (6:1178)
  cwFold (6:701, 6:767)
  deconvolution (6:568)
  dgTMatrix (6:844)
  reranks (6:260)
  scMappR (6:38, 6:230, 6:439, 6:728, 6:877, 6:1014, 6:1208, 6:1239, 6:1579)
  scRNA (6:915, 6:963, 6:1056, 6:1595)
  scRNAseq (6:1292)
  specificities (6:1624)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2025-06-02 as requires archived package
    'limSolve'.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'scMappR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [19s] OK
* checking whether the package can be loaded with stated dependencies ... [18s] OK
* checking whether the package can be unloaded cleanly ... [18s] OK
* checking whether the namespace can be loaded with stated dependencies ... [18s] OK
* checking whether the namespace can be unloaded cleanly ... [19s] OK
* checking loading without being on the library search path ... [20s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [89s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [54s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [22s] OK
  Running 'testthat.R' [22s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [22s] OK
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 NOTE