* using log directory 'd:/RCompile/CRANincoming/R-devel/scDECO.Rcheck' * using R Under development (unstable) (2024-05-21 r86580 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'scDECO/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'scDECO' version '0.1.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Anderson Bussing ' New submission * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'scDECO' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE Non-standard file/directory found at top level: 'images' * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [12s] NOTE alphaBeta.update: no visible global function definition for 'sd' alphaBeta.update: no visible global function definition for 'rnorm' alphaBeta.update: no visible global function definition for 'dgamma' alphaBeta.update: no visible global function definition for 'runif' alphaGA.update: no visible global function definition for 'sd' alphaGA.update: no visible global function definition for 'rnorm' alphaGA.update: no visible global function definition for 'dgamma' alphaGA.update: no visible global function definition for 'runif' alphaNB.update: no visible global function definition for 'sd' alphaNB.update: no visible global function definition for 'rnorm' alphaNB.update: no visible global function definition for 'dgamma' alphaNB.update: no visible global function definition for 'runif' beta.update: no visible global function definition for 'cov' beta.update: no visible global function definition for 'rnorm' beta.update: no visible global function definition for 'dnorm' beta.update: no visible global function definition for 'runif' eta.update: no visible global function definition for 'cov' eta.update: no visible global function definition for 'rnorm' eta.update: no visible global function definition for 'dnorm' eta.update: no visible global function definition for 'runif' llike.Beta: no visible global function definition for 'qnorm' llike.Beta: no visible global function definition for 'dbeta' llike.Beta: no visible global function definition for 'pnorm' llike.GA: no visible global function definition for 'qnorm' llike.GA: no visible global function definition for 'dgamma' llike.GA: no visible global function definition for 'pnorm' llike.NB: no visible global function definition for 'pnbinom' llike.NB: no visible global function definition for 'pnorm' llike.NB: no visible global function definition for 'qnorm' pbet: no visible global function definition for 'pbeta' pgam: no visible global function definition for 'pgamma' qmarg_finder : qmarg: no visible global function definition for 'qnbinom' qmarg_finder : qmarg: no visible global function definition for 'qgamma' qmarg_finder : qmarg: no visible global function definition for 'qbeta' scdeco.cop: no visible global function definition for 'runif' scdeco.cop: no visible global function definition for 'rnorm' scdeco.cop: no visible global function definition for 'cor' scdeco.pg.noxc: no visible global function definition for 'var' scdeco.pg.noxc: no visible global function definition for 'update' scdeco.pg.xc: no visible global function definition for 'var' scdeco.pg.xc: no visible global function definition for 'update' scdeco.sim.cop: no visible global function definition for 'runif' scdeco.sim.cop: no visible global function definition for 'rnorm' scdeco.sim.cop: no visible global function definition for 'pnorm' scdeco.sim.pg: no visible global function definition for 'rnbinom' scdeco.sim.pg: no visible global function definition for 'rbinom' scdeco.sim.pg: no visible global function definition for 'rpois' scdeco.sim.pg: no visible global function definition for 'qgamma' scdeco.sim.pg: no visible global function definition for 'pnorm' tau.update: no visible global function definition for 'cov' tau.update: no visible global function definition for 'rnorm' tau.update: no visible global function definition for 'dnorm' tau.update: no visible global function definition for 'runif' zBeta.update: no visible global function definition for 'qnorm' zGA.update: no visible global function definition for 'qnorm' zNB.update: no visible global function definition for 'pnbinom' zNB.update: no visible global function definition for 'qnorm' Undefined global functions or variables: cor cov dbeta dgamma dnorm pbeta pgamma pnbinom pnorm qbeta qgamma qnbinom qnorm rbinom rnbinom rnorm rpois runif sd update var Consider adding importFrom("stats", "cor", "cov", "dbeta", "dgamma", "dnorm", "pbeta", "pgamma", "pnbinom", "pnorm", "qbeta", "qgamma", "qnbinom", "qnorm", "rbinom", "rnbinom", "rnorm", "rpois", "runif", "sd", "update", "var") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [40m] NOTE Examples with CPU (user + system) or elapsed time > 10s user system elapsed scdeco.pg 2349.85 0.23 2352.64 scdeco.cop 60.34 5.92 66.34 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [17m] OK * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... OK * DONE Status: 4 NOTEs