* using log directory 'd:/RCompile/CRANincoming/R-devel/scCustomize.Rcheck'
* using R Under development (unstable) (2024-02-20 r85959 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'scCustomize/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'scCustomize' version '2.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [16s] Note_to_CRAN_maintainers
Maintainer: 'Samuel Marsh <samuel.marsh@childrens.harvard.edu>'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'scCustomize' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [36s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking examples ... [31s] ERROR
Running examples in 'scCustomize-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Plot_Median_Genes
> ### Title: Plot Median Genes per Cell per Sample
> ### Aliases: Plot_Median_Genes
> 
> ### ** Examples
> 
> library(Seurat)
> # Create example groups
> pbmc_small$sample_id <- sample(c("sample1", "sample2"), size = ncol(pbmc_small), replace = TRUE)
> 
> # Plot
> Plot_Median_Genes(seurat_object = pbmc_small, sample_col = "orig.ident",  group_by = "sample_id")
Bin width defaults to 1/30 of the range of the data. Pick better value with
`binwidth`.
Error in `plot_theme()`:
! The `legend.text.align` theme element is not defined in the element
  hierarchy.
Backtrace:
     ▆
  1. ├─base (local) `<fn>`(x)
  2. └─ggplot2:::print.ggplot(x)
  3.   ├─ggplot2::ggplot_gtable(data)
  4.   └─ggplot2:::ggplot_gtable.ggplot_built(data)
  5.     └─ggplot2:::plot_theme(plot)
  6.       └─ggplot2:::validate_theme(theme)
  7.         └─base::mapply(...)
  8.           └─ggplot2 (local) `<fn>`(...)
  9.             └─cli::cli_abort(...)
 10.               └─rlang::abort(...)
Execution halted
* checking PDF version of manual ... [18s] OK
* checking HTML version of manual ... [22s] OK
* DONE
Status: 1 ERROR