context("warnings") test_that("verb warnings are correctly returned or not", { skip_on_cran() #this dataset is from the ant paper and the epm2 model does not fit #properly (just flat line) and should return the same min RSS warning ant <- data.frame("A" = c(3.210e-06, 3.740e-06, 4.050e-06, 4.210e-06, 4.990e-06, 5.270e-06, 5.560e-06, 5.770e-06, 6.910e-06, 7.970e-06, 8.000e-06, 8.560e-06, 3.013e-05, 3.921e-05, 4.616e-05, 6.053e-05, 9.337e-05), "S" = c(0, 13, 13, 14, 16, 16, 17, 16, 14, 20, 20, 23, 38, 47, 58, 59, 77)) expect_warning(sar_epm2(ant), paste0("Extended Power model 2: Multiple parameter", " estimates returned the same minimum rss; one set have been", " randomly selected")) #turn verb off and set regexp = NA - to check for no warning expect_warning(sar_epm2(ant, verb = FALSE), regexp = NA) expect_error(sar_epm2(ant, verb = "T")) ##without residual checks mods <- c("power", "linear", "monod", "weibull3", "p1", "epm2") #checking verb expect_warning(sar_average(data = ant, obj = mods, grid_start = "partial", verb = TRUE, display = FALSE), paste0("Extended Power model 2: Multiple parameter", " estimates returned the same minimum rss; one set have been", " randomly selected")) expect_warning(sar_average(data = ant, obj = mods, grid_start = "partial", verb = FALSE, display = FALSE), regexp = NA) ##with residual checks #checking verb expect_warning(sar_average(data = ant, obj = mods, grid_start = "partial", verb = TRUE, display = TRUE, normaTest = "lillie"), paste0("Extended Power model 2: Multiple parameter", " estimates returned the same minimum rss; one set have been", " randomly selected")) expect_message(sar_average(data = galap, obj = mods, grid_start = "none", verb = TRUE, display = TRUE, normaTest = "lillie"), "1 models failed the residuals normality test") expect_message(sar_average(data = galap, obj = mods, grid_start = "none", verb = TRUE, display = FALSE, homoTest = "cor.area"), "3 models failed the residuals homogeneity") expect_message(sar_average(data = galap, obj = mods, grid_start = "none", verb = FALSE, display = TRUE, normaTest = "lillie"), regexp = NA) expect_error(sar_average(data = galap, verb = 3)) expect_error(sar_average(data = galap, display = 3)) expect_error(sar_multi(data = galap, verb = 3)) expect_error(sar_multi(data = galap, display = "TRUE")) })