R Under development (unstable) (2024-10-01 r87205 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(sars)
> 
> test_check("sars")

 Now attempting to fit the 20 SAR models: 

──  multi_sars ────────────────────────────────────────────── multi-model SAR ──
→ power    : ✔
→ powerR   : ✔
→ epm1     : ✔
→ epm2     : ✔
→ p1       : ✔
→ p2       : ✔
→ loga     : ✔
→ koba     : ✔
→ monod    : ✔
→ negexpo  : ✔
→ chapman  : ✔
→ weibull3 : ✔
→ asymp    : ✔
→ ratio    : ✔
→ gompertz : ✔
→ weibull4 : ✔
→ betap    : ✔
→ logistic : ✔
→ heleg    : ✔
→ linear   : ✔

Model fitting completed - all models succesfully fitted. Now undertaking model validation checks. Additional models  will be excluded if necessary:

16 remaining models used to construct the multi SAR:
 Power, PowerR, Extended Power model 2, Persistence function 1, Persistence function 2, Logarithmic, Kobayashi, Monod, Negative exponential, Chapman Richards, Cumulative Weibull 3 par., Rational function, Gompertz, Beta-P cumulative, Logistic(Standard), Heleg(Logistic) 
────────────────────────────────────────────────────────────────────────────────

 Now attempting to fit the 20 SAR models: 

──  multi_sars ────────────────────────────────────────────── multi-model SAR ──
→ power    : ✔
→ powerR   : ✔
→ epm1     : ✔
→ epm2     : ✔
→ p1       : ✔
→ p2       : ✔
→ loga     : ✔
→ koba     : ✔
→ monod    : ✔
→ negexpo  : ✔
→ chapman  : Warning: could not compute parameters statistics
→ weibull3 : ✔
→ asymp    : ✔
→ ratio    : Warning: could not compute parameters statistics
→ gompertz : ✔
→ weibull4 : Warning: could not compute parameters statistics
→ betap    : Warning: could not compute parameters statistics
→ logistic : ✔
→ heleg    : ✔
→ linear   : ✔

No model validation checks selected

20 remaining models used to construct the multi SAR:
 Power, PowerR, Extended Power model 1, Extended Power model 2, Persistence function 1, Persistence function 2, Logarithmic, Kobayashi, Monod, Negative exponential, Chapman Richards, Cumulative Weibull 3 par., Asymptotic regression, Rational function, Gompertz, Cumulative Weibull 4 par., Beta-P cumulative, Logistic(Standard), Heleg(Logistic), Linear model 
────────────────────────────────────────────────────────────────────────────────

 Now attempting to fit the 2 SAR models: 

──  multi_sars ────────────────────────────────────────────── multi-model SAR ──
→ linear : ✔
→ power  : ✔

 Now attempting to fit the 3 SAR models: 

──  multi_sars ────────────────────────────────────────────── multi-model SAR ──
→ power : ✔
→ koba  : ✔
→ ratio : ✔
[ FAIL 0 | WARN 0 | SKIP 20 | PASS 152 ]

══ Skipped tests (20) ══════════════════════════════════════════════════════════
• On CRAN (20): 'test_crit_method.R:5:3', 'test_crit_method.R:96:3',
  'test_grid_start.R:4:3', 'test_indiv_CIs.R:5:3', 'test_logistic.R:5:3',
  'test_multi.R:4:3', 'test_multi.R:30:3', 'test_multi.R:45:3',
  'test_multi.R:76:3', 'test_multi.R:89:3', 'test_p2.R:4:3',
  'test_pred.R:27:3', 'test_shape.R:4:3', 'test_thresholds.R:5:3',
  'test_thresholds.R:72:3', 'test_thresholds.R:94:3',
  'test_thresholds.R:133:3', 'test_warnings.R:5:3', 'test_weibull3.R:4:3',
  'test_weibull3.R:15:3'

[ FAIL 0 | WARN 0 | SKIP 20 | PASS 152 ]
> data("galap")
> 
> 
> #devtools::test("sars")
> #https://github.com/r-lib/testthat/issues/257
> 
> #don't forget to manually un-hash and run some of the GDM, threshold and
> #test_crit_method (just the last one for beta p) tests. GDM as issues with 
> #having BAT as a dependency, and threshold and betap due
> #to speed and running time on Circle CI. Also one sar_habitat test hashed
> #out due to needing external dataset.
> 
> #also, if making lots of commits in short amount of time, hash out
> #code coverage from the circle CI yml file to avoid it do every time.
> 
> proc.time()
   user  system elapsed 
  60.35    1.21   61.67