R Under development (unstable) (2025-11-11 r89006 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> library(saros.base)
> 
> testthat::test_check("saros.base")
Starting 2 test processes.
> test-check_chapter_structure_for_duplicates.R: Refining chapter_overview into a chapter_structure ...
> test-arrange2.R: `chunk_templates` is NULL. Using global defaults.
> test-check_chapter_structure_for_duplicates.R: Hiding 10 entries due to no type match: `b_1 (fct) and b_2 (fct)`.
> test-arrange2.R: Hiding 25 entries due to no type match: `var_e (fct), var_d (fct), var_c (fct), var_b (fct), and var_a (fct)`.
> test-check_chapter_structure_for_duplicates.R: Refining chapter_overview into a chapter_structure ...
> test-arrange2.R: `chunk_templates` is NULL. Using global defaults.
> test-check_chapter_structure_for_duplicates.R: Hiding 20 entries due to no type match: `a_1 (fct), a_2 (fct), b_1 (fct), and b_2 (fct)`.
> test-arrange2.R: Hiding 20 entries due to no type match: `alpha_1 (fct), alpha_2 (fct), beta_2 (fct), and beta_3 (fct)`.
> test-arrange2.R: `chunk_templates` is NULL. Using global defaults.
> test-arrange2.R: Hiding 30 entries due to no type match: `dep_c (fct), dep_b (fct), dep_a (fct), and indep_x (fct)`.
> test-draft_report.R: `chunk_templates` is NULL. Using global defaults.
> test-draft_report.R: Refining chapter_overview into a chapter_structure ...
> test-create_htaccess.R: v Created main '.htaccess' with security headers at 'D:\temp\2025_11_12_19_00_16_11376\RtmpwvSjPO/test_main_htaccess/run_1762972632/_site/.htaccess'
> test-create_htaccess.R: v Added security headers to existing '.htaccess'
> test-create_htaccess.R: v Added HTTPS redirect to existing '.htaccess'
> test-create_htaccess.R: i Security headers already present in '.htaccess'
> test-create_htaccess.R: v Added HTTPS redirect to existing '.htaccess'
> test-draft_report.R: Hiding 266 entries due to no type match: `a_1 (fct), a_2 (fct), a_3 (fct), a_4 (fct), a_5 (fct), a_6 (fct), a_9 (fct), b_1 (fct), b_2 (fct), b_3 (fct), c_1 (dbl), c_2 (dbl), e_1 (fct), e_2 (fct), e_3 (fct), e_4 (fct), open_comments (chr), p_1 (fct), p_2 (fct), p_3 (fct), p_4 (fct), d_1 (fct), d_2 (fct), d_3 (fct), d_4 (fct), x1_sex (fct), x3_nationality (fct), and f_uni (chr)`.
> test-draft_report.R: Not using the following variables in `data`: `x2_human, a_7, a_8, f_uni, and resp_status`.
> test-log_file_exclusions.R: Not using the following variables in `data`: `unused1 and unused2`.
> test-log_file_exclusions.R: Hiding 1 variable containing all NA: `var2`.
> test-log_file_exclusions.R: Hiding 2 entries with n < 10: `var1 (n=5) and var3 (n=8)`.
> test-log_file_exclusions.R: Hiding 1 non-significant bivariate (p > 0.05): `dep1 × indep1 (p=1)`.
> test-log_file_exclusions.R: Hiding 1 non-significant bivariate (p > 0.05): `dep1 × indep1 (p=1)`.
> test-log_file_exclusions.R: Hiding 1 bivariate with no non-NA overlap: `dep1 × indep1 (no overlap)`.
> test-log_file_exclusions.R: Not using the following variables in `data`: `unused1`.
> test-log_file_exclusions.R: Hiding 1 variable containing all NA: `var2`.
> test-log_file_exclusions.R: Not using the following variables in `data`: `unused1`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 15 entries due to no type match: `b_1 (fct), b_2 (fct), and b_3 (fct)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x1_sex, x2_human, x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_1, p_2, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 10 entries due to no type match: `b_1 (fct) and b_2 (fct)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x1_sex, x2_human, x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, b_3, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_1, p_2, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Refining chapter_overview into a chapter_structure ...
> test-draft_report.R: `chunk_templates` is NULL. Using global defaults.
> test-draft_report.R: Refining chapter_overview into a chapter_structure ...
> test-refine_chapter_overview.R: Hiding 266 entries due to no type match: `a_1 (fct), a_2 (fct), a_3 (fct), a_4 (fct), a_5 (fct), a_6 (fct), a_9 (fct), b_1 (fct), b_2 (fct), b_3 (fct), c_1 (dbl), c_2 (dbl), e_1 (fct), e_2 (fct), e_3 (fct), e_4 (fct), open_comments (chr), p_1 (fct), p_2 (fct), p_3 (fct), p_4 (fct), d_1 (fct), d_2 (fct), d_3 (fct), d_4 (fct), x1_sex (fct), x3_nationality (fct), and f_uni (chr)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x2_human, a_7, a_8, f_uni, and resp_status`.
> test-draft_report.R: Hiding 266 entries due to no type match: `a_1 (fct), a_2 (fct), a_3 (fct), a_4 (fct), a_5 (fct), a_6 (fct), a_9 (fct), b_1 (fct), b_2 (fct), b_3 (fct), c_1 (dbl), c_2 (dbl), e_1 (fct), e_2 (fct), e_3 (fct), e_4 (fct), open_comments (chr), p_1 (fct), p_2 (fct), p_3 (fct), p_4 (fct), d_1 (fct), d_2 (fct), d_3 (fct), d_4 (fct), x1_sex (fct), x3_nationality (fct), and f_uni (chr)`.
> test-draft_report.R: Not using the following variables in `data`: `x2_human, a_7, a_8, f_uni, and resp_status`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 5 non-significant bivariates (p > 0.05): `b_1 × x1_sex (p=0.728), b_2 × x1_sex (p=0.447), b_3 × x1_sex (p=0.85), c_1 × x1_sex (p=0.833), and c_2 × x1_sex (p=0.441)`.
> test-refine_chapter_overview.R: Hiding 54 entries due to no type match: `b_1 (fct), b_2 (fct), b_3 (fct), c_1 (dbl), c_2 (dbl), and x2_human (fct)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x1_sex, x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_1, p_2, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 1 non-significant bivariate (p > 0.01): `b_2 × f_uni (p=NA)`.
> test-refine_chapter_overview.R: Hiding 15 entries due to no type match: `b_2 (fct), x1_sex (fct), and x2_human (fct)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, b_1, b_3, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_1, p_2, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 1 non-significant bivariate (p > 0.01): `x1_sex × x2_human (p=0.996)`.
> test-refine_chapter_overview.R: Hiding 5 entries due to no type match: `x1_sex (fct)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x2_human, x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, b_1, b_2, b_3, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_1, p_2, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 15 entries due to no type match: `x1_sex (fct), x1_sex (fct), and x2_human (fct)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, b_1, b_2, b_3, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_1, p_2, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-remove_from_chapter_structure_if_no_overlap.R: Hiding 1 bivariate with no non-NA overlap: `var1 × var3 (no overlap)`.
> test-remove_from_chapter_structure_if_no_overlap.R: `chunk_templates` is NULL. Using global defaults.
> test-remove_from_chapter_structure_if_no_overlap.R: Refining chapter_overview into a chapter_structure ...
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-remove_from_chapter_structure_if_no_overlap.R: Hiding 10 entries due to no type match: `var1 (fct) and var2 (fct)`.
> test-refine_chapter_overview.R: Hiding 15 entries due to no type match: `b_1 (fct), x1_sex (fct), and x2_human (fct)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, b_2, b_3, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_1, p_2, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-remove_from_chapter_structure_if_no_overlap.R: `chunk_templates` is NULL. Using global defaults.
> test-remove_from_chapter_structure_if_no_overlap.R: Refining chapter_overview into a chapter_structure ...
> test-remove_from_chapter_structure_if_no_overlap.R: Hiding 10 entries due to no type match: `var1 (fct) and var2 (fct)`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 1 variable containing all NA: `all_na_var`.
> test-refine_chapter_overview.R: Hiding 5 entries due to no type match: `x1_sex (fct)`.
> test-remove_from_chapter_structure_if_no_type_match.R: Hiding 1 entry due to no type match: `var2 (chr) and indep2 (int)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x2_human, x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, b_1, b_2, b_3, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_1, p_2, p_3, p_4, f_uni, open_comments, resp_status, and all_na_var`.
> test-remove_from_chapter_structure_if_non_significant.R: Hiding 3 non-significant bivariates (p > 0.05): `satisfaction × gender (p=0.133), satisfaction × age_group (p=0.154), and age_group × gender (p=0.686)`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-remove_from_chapter_structure_if_non_significant.R: Hiding 1 non-significant bivariate (p > 0.05): `var1 × var2 (p=0.452)`.
> test-refine_chapter_overview.R: Hiding 11 entries due to no type match: `all_na_var (int) and x1_sex (fct)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x2_human, x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, b_1, b_2, b_3, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_1, p_2, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-remove_from_chapter_structure_if_non_significant.R: Hiding 1 non-significant bivariate (p > 0.05): `outcome × noise_var (p=0.298)`.
> test-refine_chapter_overview.R: Hiding 1 entry with n < 10: `all_na_var (n=0)`.
> test-remove_from_chapter_structure_if_non_significant.R: Hiding 2 non-significant bivariates (p > 0.05): `char_var × factor_var (p=NA) and factor_var × char_var (p=NA)`.
> test-remove_from_chapter_structure_if_non_significant.R: Hiding 1 non-significant bivariate (p > 0.05): `constant_var × varying_var (p=0.353)`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 20 entries due to no type match: `p_1 (fct), p_2 (fct), and x2_human (fct)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x1_sex, x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, b_1, b_2, b_3, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 20 entries due to no type match: `p_1 (fct), p_2 (fct), and x2_human (fct)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x1_sex, x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, b_1, b_2, b_3, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 12 entries due to no type match: `p_1 (fct) and f_uni (chr)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x1_sex, x2_human, x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, b_1, b_2, b_3, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_2, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 12 entries due to no type match: `p_1 (fct) and f_uni (chr)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x1_sex, x2_human, x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, b_1, b_2, b_3, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_2, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 25 entries due to no type match: `b_1 (fct), b_2 (fct), b_3 (fct), and x1_sex (fct)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x2_human, x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_1, p_2, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 25 entries due to no type match: `b_1 (fct), b_2 (fct), b_3 (fct), and x1_sex (fct)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x2_human, x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_1, p_2, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 266 entries due to no type match: `a_1 (fct), a_2 (fct), a_3 (fct), a_4 (fct), a_5 (fct), a_6 (fct), a_9 (fct), b_1 (fct), b_2 (fct), b_3 (fct), c_1 (dbl), c_2 (dbl), e_1 (fct), e_2 (fct), e_3 (fct), e_4 (fct), open_comments (chr), p_1 (fct), p_2 (fct), p_3 (fct), p_4 (fct), d_1 (fct), d_2 (fct), d_3 (fct), d_4 (fct), x1_sex (fct), x3_nationality (fct), and f_uni (chr)`.
> test-setup_mesos_structure.R: i Creating mesos structure in 'D:/temp/2025_11_12_19_00_16_11376/RtmpmEcLTJ/filed5a022e16da5/output'
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x2_human, a_7, a_8, f_uni, and resp_status`.
> test-setup_mesos_structure.R: v Mesos structure created successfully
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Refining chapter_overview into a chapter_structure ...
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 2 non-significant bivariates (p > 0.01): `b_1 × x2_human (p=0.536) and b_1 × x1_sex (p=0.728)`.
> test-validate_draft_report_args.R: `chunk_templates` is NULL. Using global defaults.
> test-validate_draft_report_args.R: Refining chapter_overview into a chapter_structure ...
> test-refine_chapter_overview.R: Hiding 5 entries due to no type match: `b_1 (fct)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x1_sex, x2_human, x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, b_2, b_3, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_1, p_2, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-validate_draft_report_args.R: Hiding 5 entries due to no type match: `a_1 (fct)`.
> test-validate_draft_report_args.R: Not using the following variables in `data`: `x1_sex, x2_human, x3_nationality, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, b_1, b_2, b_3, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_1, p_2, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 1 non-significant bivariate (p > 0.01): `b_1 × x1_sex (p=0.728)`.
> test-refine_chapter_overview.R: Hiding 10 entries due to no type match: `b_1 (fct) and x2_human (fct)`.
> test-refine_chapter_overview.R: Not using the following variables in `data`: `x1_sex, x3_nationality, a_1, a_2, a_3, a_4, a_5, a_6, a_7, a_8, a_9, b_2, b_3, c_1, c_2, d_1, d_2, d_3, d_4, e_1, e_2, e_3, e_4, p_1, p_2, p_3, p_4, f_uni, open_comments, and resp_status`.
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Refining chapter_overview into a chapter_structure ...
> test-refine_chapter_overview.R: `chunk_templates` is NULL. Using global defaults.
> test-refine_chapter_overview.R: Hiding 3 non-significant bivariates (p > 0.05): `dep_int × indep_ord (p=NA), dep_dbl × indep_ord (p=NA), and dep_ord × indep_ord (p=NA)`.
> test-refine_chapter_overview.R: Hiding 27 entries due to no type match: `dep_dbl (dbl), dep_fct (fct), dep_int (int), dep_ord (ord), and indep_ord (ord)`.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 611 ]
> 
> proc.time()
   user  system elapsed 
   4.67    0.53   28.65