context('stats::smooth.spline') if ((as.numeric(R.Version()$major) >= 4) && (as.numeric(R.Version()$minor) >= 2.0) && (.Platform$OS.type == "windows")) { ## Current fit of all 8 ind, for all 22 variables, from df=2 to 7 result_allSmoothSplineFit <- vector("list", 6) # iterate df for (df in 2:7) { tmp_varFit <- vector("list", 22) # iterate variables for (var in 1:22) { indName <- unique(acuteInflammation$meta$ind) tmp_indFit <- vector("list", 8) names(tmp_indFit) <- indName # interate individuals for (ind in 1:8) { tmp_x <- acuteInflammation$meta[acuteInflammation$meta$ind == indName[ind], 'time'] tmp_y <- acuteInflammation$data[acuteInflammation$meta$ind == indName[ind], var] tmp_indFit[[ind]] <- stats::smooth.spline(x=tmp_x, y=tmp_y, df=df) } names(tmp_varFit)[var] <- paste('var', var, sep='_') tmp_varFit[var] <- list(tmp_indFit) } names(result_allSmoothSplineFit)[df-1] <- paste('df', df, sep='_') # df is 2:7, list idx to fill are 1:7 result_allSmoothSplineFit[df-1] <- list(tmp_varFit) } ## Expected data path_expected_data <- system.file("testdata/all_smoothSpline_fit.RData", package = "santaR") load(path_expected_data) # expected_allSmoothSplineFit test_that('stats::smooth.spline() fit is consistent', { # current vs reference smooth.spline fit expect_equal(result_allSmoothSplineFit, expected_allSmoothSplineFit, tolerance=1e-6) }) }