downloading reverse dependencies ... downloading gamma_1.0.5.tar.gz ... ok downloading powdR_1.3.0.tar.gz ... ok installing dependencies ‘IsoplotR’, ‘rxylib’ begin installing package ‘IsoplotR’ begin installing package ‘rxylib’ * installing *source* package ‘IsoplotR’ ... ** package ‘IsoplotR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IsoplotR) * installing *source* package ‘rxylib’ ... ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQn3XBf/R.INSTALL1b4bd464d749fc/rxylib/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c read_data.cpp -o read_data.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c get_supportedFormats.cpp -o get_supportedFormats.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c get_version.cpp -o get_version.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c get_meta_DataSet.cpp -o get_meta_DataSet.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c get_block_names.cpp -o get_block_names.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/bruker_raw.cpp -o xylib/bruker_raw.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/bruker_spc.cpp -o xylib/bruker_spc.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/cache.cpp -o xylib/cache.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/canberra_cnf.cpp -o xylib/canberra_cnf.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/canberra_mca.cpp -o xylib/canberra_mca.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/chiplot.cpp -o xylib/chiplot.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/cpi.cpp -o xylib/cpi.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/csv.cpp -o xylib/csv.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/dbws.cpp -o xylib/dbws.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/pdcif.cpp -o xylib/pdcif.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/scoped_ptr.hpp:13, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/spirit/home/classic/core/non_terminal/rule.hpp:31, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/spirit/home/classic/core.hpp:41, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/spirit/include/classic_core.hpp:11, from xylib/pdcif.cpp:14: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) | ^~~~~~~~ In file included from /usr/include/c++/14/memory:78, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/scoped_ptr.hpp:23: /usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/shared_ptr.hpp:17, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/spirit/home/classic/core/non_terminal/impl/object_with_id.ipp:14, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/spirit/home/classic/core/non_terminal/impl/grammar.ipp:15, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/spirit/home/classic/core/non_terminal/grammar.hpp:21, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/spirit/home/classic/core.hpp:42: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 361 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ /usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > | ^~~~~~~~ /usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 508 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 604 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 613 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 615 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/philips_raw.cpp -o xylib/philips_raw.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/philips_udf.cpp -o xylib/philips_udf.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/riet7.cpp -o xylib/riet7.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/rigaku_dat.cpp -o xylib/rigaku_dat.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/specsxy.cpp -o xylib/specsxy.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/spectra.cpp -o xylib/spectra.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/text.cpp -o xylib/text.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/util.cpp -o xylib/util.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/uxd.cpp -o xylib/uxd.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/vamas.cpp -o xylib/vamas.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/winspec_spe.cpp -o xylib/winspec_spe.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/xfit_xdd.cpp -o xylib/xfit_xdd.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/xrdml.cpp -o xylib/xrdml.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/iter_apply.hpp:17, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/find_if_pred.hpp:14, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/find_if.hpp:17, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/find.hpp:17, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/contains_impl.hpp:20, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/contains.hpp:20, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/multi_index_container.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/property_tree/ptree.hpp:21, from xylib/xrdml.cpp:9: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/bind/mem_fn.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/bind/bind.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/multi_index/sequenced_index.hpp:17, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/property_tree/ptree.hpp:23: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ In file included from /usr/include/c++/14/memory:78, from xylib/xrdml.cpp:8: /usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/xsyg.cpp -o xylib/xsyg.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/apply.hpp:24, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/iter_apply.hpp:17, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/find_if_pred.hpp:14, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/find_if.hpp:17, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/find.hpp:17, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/contains_impl.hpp:20, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/contains.hpp:20, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/multi_index_container.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/property_tree/ptree.hpp:21, from xylib/xsyg.cpp:5: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/bind/mem_fn.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/bind/bind.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/multi_index/sequenced_index.hpp:17, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/property_tree/ptree.hpp:23: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ In file included from /usr/include/c++/14/memory:78, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/property_tree/ptree_fwd.hpp:18, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/property_tree/ptree.hpp:15: /usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here 59 | template class auto_ptr; | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c xylib/xylib.cpp -o xylib/xylib.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o rxylib.so read_data.o get_supportedFormats.o get_version.o get_meta_DataSet.o get_block_names.o RcppExports.o ./xylib/bruker_raw.o ./xylib/bruker_spc.o ./xylib/cache.o ./xylib/canberra_cnf.o ./xylib/canberra_mca.o ./xylib/chiplot.o ./xylib/cpi.o ./xylib/csv.o ./xylib/dbws.o ./xylib/pdcif.o ./xylib/philips_raw.o ./xylib/philips_udf.o ./xylib/riet7.o ./xylib/rigaku_dat.o ./xylib/specsxy.o ./xylib/spectra.o ./xylib/text.o ./xylib/util.o ./xylib/uxd.o ./xylib/vamas.o ./xylib/winspec_spe.o ./xylib/xfit_xdd.o ./xylib/xrdml.o ./xylib/xsyg.o ./xylib/xylib.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQn3XBf/R.INSTALL1b4bd464d749fc/rxylib/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-rxylib/00new/rxylib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rxylib) checking rxylib_0.2.14.tar.gz ... checking gamma_1.0.5.tar.gz ... checking powdR_1.3.0.tar.gz ... Depends: Package: rxylib Depends: R (>= 4.1), utils Imports: methods, Rcpp (>= 1.0.10) LinkingTo: Rcpp (>= 1.0.10), BH (>= 1.81.0) Timings: user system elapsed rxylib 67.452 6.724 78.7 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 0 2 Check results summary: rxylib ... NOTE * checking CRAN incoming feasibility ... [6s/10s] NOTE rdepends_gamma ... OK rdepends_powdR ... OK