R Under development (unstable) (2025-12-08 r89124 ucrt) -- "Unsuffered Consequences"
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> library(rxode2)
rxode2 5.0.1 using 2 threads (see ?getRxThreads)
  no cache: create with `rxCreateCache()`
> library(testthat)
> setRxThreads(1L)
> library(data.table)

Attaching package: 'data.table'

The following object is masked from 'package:base':

    %notin%

> setDTthreads(1L)
> if (!identical(Sys.getenv("NOT_CRAN"), "true") &&
+       identical(Sys.info()["sysname"], "Darwin")) {
+   rxUnloadAll(set=FALSE)
+ }
> test_check("rxode2", reporter = testthat::LocationReporter)
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Start test: activation functions
  'test-activation.R:40:3' [success]
  'test-activation.R:41:3' [success]
  'test-activation.R:45:3' [success]
  'test-activation.R:46:3' [success]
  'test-activation.R:50:3' [success]
  'test-activation.R:51:3' [success]
  'test-activation.R:55:3' [success]
  'test-activation.R:56:3' [success]
  'test-activation.R:61:3' [success]
  'test-activation.R:62:3' [success]
  'test-activation.R:67:3' [success]
  'test-activation.R:68:3' [success]
  'test-activation.R:73:3' [success]
  'test-activation.R:74:3' [success]
  'test-activation.R:79:3' [success]
  'test-activation.R:80:3' [success]
  'test-activation.R:85:3' [success]
  'test-activation.R:86:3' [success]
  'test-activation.R:93:3' [success]
  'test-activation.R:94:3' [success]
  'test-activation.R:101:3' [success]
  'test-activation.R:102:3' [success]
  'test-activation.R:109:3' [success]
  'test-activation.R:110:3' [success]
  'test-activation.R:115:3' [success]
  'test-activation.R:116:3' [success]
  'test-activation.R:121:3' [success]
  'test-activation.R:122:3' [success]
  'test-activation.R:127:3' [success]
  'test-activation.R:128:3' [success]
  'test-activation.R:133:3' [success]
  'test-activation.R:134:3' [success]
  'test-activation.R:140:3' [success]
  'test-activation.R:141:3' [success]
  'test-activation.R:147:3' [success]
  'test-activation.R:148:3' [success]
  'test-activation.R:154:3' [success]
  'test-activation.R:155:3' [success]
  'test-activation.R:161:3' [success]
  'test-activation.R:162:3' [success]
End test: activation functions

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Start test: when reserved variables are assigned, parser should error
rxode2 model syntax error:
================================================================================
:001:     C2 <- centr/V2
:002:     C3 <- peri/V3
:003:     d/dt(depot) <- -KA * depot
:004:     d/dt(centr) <- KA * depot - CL * C2 - Q * C2 + Q * C3
:005:     d/dt(peri) <- Q * C2 - Q * C3
:006:     eff(0) <- 1
:007:     d/dt(eff) <- Kin - Kout * (1 - C2/(EC50 + C2)) * eff
:008: cannot assign protected variable 't':
          t <- 1
          ^
================================================================================
  'test-assignReserved.R:3:3' [success]
End test: when reserved variables are assigned, parser should error

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Start test: cbind study and individual
  'test-cbind-study-individual.R:40:3' [skip]
End test: cbind study and individual

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Start test: Demo runs successfully
  'test-demo.R:4:5' [success]
End test: Demo runs successfully

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Start test: warning on translation (#780)
  'test-etTrans.R:1616:3' [success]
End test: warning on translation (#780)

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Start test: multi-compartment solves
  'test-lhs-ifelse.R:32:5' [success]
  'test-lhs-ifelse.R:33:5' [success]
  'test-lhs-ifelse.R:34:5' [success]
  'test-lhs-ifelse.R:35:5' [success]
End test: multi-compartment solves

Start test: multi-compartment solves
  'test-lhs-ifelse.R:46:5' [success]
  'test-lhs-ifelse.R:47:5' [success]
  'test-lhs-ifelse.R:48:5' [success]
  'test-lhs-ifelse.R:49:5' [success]
End test: multi-compartment solves

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Start test: evid4
i parameter labels from comments will be replaced by 'label()'
i parameter labels from comments will be replaced by 'label()'
i parameter labels from comments will be replaced by 'label()'
i parameter labels from comments will be replaced by 'label()'
  'test-nmtest.R:438:3' [success]
  'test-nmtest.R:440:3' [success]
  'test-nmtest.R:442:3' [success]
  'test-nmtest.R:444:3' [success]
End test: evid4

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Start test: drop linCmt() endpoint (#355)
  'test-pipeline.R:139:3' [success]
  'test-pipeline.R:142:3' [success]
End test: drop linCmt() endpoint (#355)

Start test: Compartment should not be added to ini (rxode2#336)
  'test-pipeline.R:170:3' [success]
  'test-pipeline.R:171:3' [success]
  'test-pipeline.R:172:3' [success]
End test: Compartment should not be added to ini (rxode2#336)

Start test: .getModelLineEquivalentLhsExpressionDropDdt
  'test-pipeline.R:178:3' [success]
  'test-pipeline.R:179:3' [success]
End test: .getModelLineEquivalentLhsExpressionDropDdt

Start test: .getModelLineEquivalentLhsExpressionDropEndpoint
  'test-pipeline.R:187:3' [success]
  'test-pipeline.R:192:3' [success]
  'test-pipeline.R:196:3' [success]
  'test-pipeline.R:200:3' [success]
  'test-pipeline.R:204:3' [success]
  'test-pipeline.R:208:3' [success]
End test: .getModelLineEquivalentLhsExpressionDropEndpoint

Start test: .getVariablesFromExpression
  'test-pipeline.R:215:3' [success]
  'test-pipeline.R:216:3' [success]
  'test-pipeline.R:217:3' [success]
  'test-pipeline.R:218:3' [success]
  'test-pipeline.R:220:3' [success]
  'test-pipeline.R:221:3' [success]
  'test-pipeline.R:222:3' [success]
End test: .getVariablesFromExpression

Start test: .getLhs, .getRhs
  'test-pipeline.R:226:3' [success]
  'test-pipeline.R:227:3' [success]
  'test-pipeline.R:228:3' [success]
  'test-pipeline.R:229:3' [success]
  'test-pipeline.R:231:3' [success]
  'test-pipeline.R:232:3' [success]
  'test-pipeline.R:233:3' [success]
End test: .getLhs, .getRhs

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Start test: sumProd test
  'test-rxSumProd.R:6:5' [success]
End test: sumProd test

Start test: rxUiDeparse()
  'test-rxUiDeparse.R:4:3' [success]
  'test-rxUiDeparse.R:7:3' [success]
End test: rxUiDeparse()

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Start test: Issue RxODE#7
  'test-rxode-issue-007.R:14:5' [success]
End test: Issue RxODE#7

Start test: Assign statement
  'test-rxode-issue-008.R:3:5' [success]
End test: Assign statement

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Start test: Make sure initial conditions work, Issue RxODE#67: baseline works
  'test-rxode-issue-067.R:12:5' [success]
End test: Make sure initial conditions work, Issue RxODE#67: baseline works

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Start test: Bioavailability doesn't impact other cmts (issue RxODE#160)
  'test-rxode-issue-160.R:19:5' [success]
End test: Bioavailability doesn't impact other cmts (issue RxODE#160)

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Start test: issue RxODE#213 doesn't drop patients, 1e+5 doesn't drop
  'test-rxode-issue-213.R:27:5' [success]
  'test-rxode-issue-213.R:41:5' [success]
End test: issue RxODE#213 doesn't drop patients, 1e+5 doesn't drop

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Start test: rxode2 produces an error instead of crashing for bad model types; Issue RxODE#449
  'test-rxode-issue-449.R:3:5' [success]
End test: rxode2 produces an error instead of crashing for bad model types; Issue RxODE#449

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Start test: safeZero solving
  'test-safeZero.R:14:3' [success]
  'test-safeZero.R:15:3' [success]
  'test-safeZero.R:16:3' [success]
  'test-safeZero.R:17:3' [success]
  'test-safeZero.R:21:3' [success]
  'test-safeZero.R:22:3' [success]
  'test-safeZero.R:23:3' [success]
  'test-safeZero.R:24:3' [success]
  'test-safeZero.R:28:3' [success]
  'test-safeZero.R:29:3' [success]
  'test-safeZero.R:30:3' [success]
  'test-safeZero.R:31:3' [success]
End test: safeZero solving

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Start test: Simulate Error, issue #670
  'test-sim-err-670.R:203:3' [warning]
  'test-sim-err-670.R:203:3' [success]
End test: Simulate Error, issue #670

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Start test: statePropDf test
  'test-statePropDf.R:38:3' [success]
  'test-statePropDf.R:47:3' [success]
! remove population parameter `fdepot`
  'test-statePropDf.R:52:3' [success]
! remove population parameter `durDepot`
  'test-statePropDf.R:57:3' [success]
! remove population parameter `rateDepot`
  'test-statePropDf.R:62:3' [success]
  'test-statePropDf.R:85:3' [success]
End test: statePropDf test

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Start test: test-strncmpi
  'test-strncmpi.R:2:3' [skip]
End test: test-strncmpi

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Start test: udf type 2 (that changes ui models upon parsing)
  'test-udf.R:369:3' [success]
rxode2 model syntax error:
================================================================================
:001: rxode2 ui user defined R function has 2 arguments, but supplied 3:
      a <- linMod(x, 3, b)
           ^~~~~~
================================================================================
  'test-udf.R:370:3' [success]
rxode2 model syntax error:
================================================================================
:001: rxode2 ui user defined R function has 2 arguments, but supplied 1:
      a <- linMod(x)
                  ^
================================================================================
  'test-udf.R:371:3' [success]
rxode2 model syntax error:
================================================================================
:001: rxode2 ui user defined R function has 2 arguments, but supplied 0:
      a <- linMod()
                  ^
================================================================================
  'test-udf.R:372:3' [success]
  'test-udf.R:380:3' [success]
  'test-udf.R:396:3' [success]
  'test-udf.R:400:3' [success]
  'test-udf.R:415:3' [success]
  'test-udf.R:419:3' [success]
  'test-udf.R:436:3' [success]
  'test-udf.R:440:3' [success]
  'test-udf.R:443:3' [success]
  'test-udf.R:459:3' [success]
  'test-udf.R:462:3' [success]
  'test-udf.R:476:3' [success]
  'test-udf.R:479:3' [success]
  'test-udf.R:493:3' [success]
  'test-udf.R:496:3' [success]
  'test-udf.R:510:3' [success]
  'test-udf.R:513:3' [success]
  'test-udf.R:527:3' [success]
  'test-udf.R:530:3' [success]
  'test-udf.R:545:3' [success]
  'test-udf.R:547:3' [success]
  'test-udf.R:561:3' [success]
  'test-udf.R:576:3' [success]
  'test-udf.R:593:3' [success]
  'test-udf.R:608:3' [success]
  'test-udf.R:627:5' [success]
i parameter labels from comments are typically ignored in non-interactive mode
i Need to run with the source intact to parse comments
  'test-udf.R:635:9' [success]
End test: udf type 2 (that changes ui models upon parsing)

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Start test: noop has identical mu-ref
  'test-unary-noop.R:43:5' [success]
  'test-unary-noop.R:44:5' [success]
  'test-unary-noop.R:45:5' [success]
  'test-unary-noop.R:46:5' [success]
  'test-unary-noop.R:47:5' [success]
  'test-unary-noop.R:48:5' [success]
  'test-unary-noop.R:49:5' [success]
  'test-unary-noop.R:50:5' [success]
End test: noop has identical mu-ref

Start test: .matchesLangTemplate
  'test-utils.R:3:5' [success]
  'test-utils.R:5:5' [success]
  'test-utils.R:7:5' [success]
  'test-utils.R:9:5' [success]
  'test-utils.R:10:5' [success]
End test: .matchesLangTemplate

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Start test: Cleanly unloads all dlls
  'test-zzzzz.R:3:5' [skip]
End test: Cleanly unloads all dlls

> #test_check("rxode2")
> 
> ## test_check("rxode2",
> ##   stop_on_failure = FALSE,
> ##   reporter = testthat::LocationReporter
> ## )
> 
> proc.time()
   user  system elapsed 
  26.10    7.68   59.54