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Type 'q()' to quit R. > library(rxode2) rxode2 3.0.2 using 2 threads (see ?getRxThreads) no cache: create with `rxCreateCache()` > library(testthat) > setRxThreads(1L) > library(data.table) > setDTthreads(1L) > ##test_check("rxode2", reporter = testthat::LocationReporter) > test_check("rxode2") rxode2 model syntax error: ================================================================================ :001: C2 <- centr/V2 :002: C3 <- peri/V3 :003: d/dt(depot) <- -KA * depot :004: d/dt(centr) <- KA * depot - CL * C2 - Q * C2 + Q * C3 :005: d/dt(peri) <- Q * C2 - Q * C3 :006: eff(0) <- 1 :007: d/dt(eff) <- Kin - Kout * (1 - C2/(EC50 + C2)) * eff :008: cannot assign protected variable 't': t <- 1 ^ ================================================================================ using C compiler: 'gcc.exe (GCC) 13.2.0' In file included from D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2_model_shared.h:3, from rx_26ad05115acb9d5628458cddacbf0bf1_x64.c:122: D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2.h:3: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | : note: this is the location of the previous definition using C compiler: 'gcc.exe (GCC) 13.2.0' In file included from D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2_model_shared.h:3, from rx_ccf5ccdf4aa5bf9233226de26f222865_x64.c:121: D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2.h:3: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | : note: this is the location of the previous definition using C compiler: 'gcc.exe (GCC) 13.2.0' In file included from D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2_model_shared.h:3, from rx_5966051bb19f65ddf61295292f57c1e8_x64.c:120: D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2.h:3: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | : note: this is the location of the previous definition using C compiler: 'gcc.exe (GCC) 13.2.0' In file included from D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2_model_shared.h:3, from rx_20c1cf618cb584224a6213fc5162587c_x64.c:119: D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2.h:3: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | : note: this is the location of the previous definition using C compiler: 'gcc.exe (GCC) 13.2.0' In file included from D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2_model_shared.h:3, from rx_97f634aa7faafa38d1856a7c7d35b855_x64.c:121: D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2.h:3: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | : note: this is the location of the previous definition using C compiler: 'gcc.exe (GCC) 13.2.0' In file included from D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2_model_shared.h:3, from rx_a051faa5663044a423bc678af2804cc1_x64.c:117: D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2.h:3: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | : note: this is the location of the previous definition using C compiler: 'gcc.exe (GCC) 13.2.0' In file included from D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2_model_shared.h:3, from rx_e1466b533101d007695039a3fa712670_x64.c:123: D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2.h:3: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | : note: this is the location of the previous definition ! remove population parameter `fdepot` ! remove population parameter `durDepot` ! remove population parameter `rateDepot` rxode2 model syntax error: ================================================================================ :001: rxode2 ui user defined R function has 2 arguments, but supplied 3: a <- linMod(x, 3, b) ^~~~~~ ================================================================================ rxode2 model syntax error: ================================================================================ :001: rxode2 ui user defined R function has 2 arguments, but supplied 1: a <- linMod(x) ^ ================================================================================ rxode2 model syntax error: ================================================================================ :001: rxode2 ui user defined R function has 2 arguments, but supplied 0: a <- linMod() ^ ================================================================================ using C compiler: 'gcc.exe (GCC) 13.2.0' In file included from D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2_model_shared.h:3, from rx_5f14642274ef708721f656ce114a5e1e_x64.c:117: D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2.h:3: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | : note: this is the location of the previous definition i parameter labels from comments are typically ignored in non-interactive mode i Need to run with the source intact to parse comments > significant model change detected > kept in model: '$matt' > removed from model: '$f' > significant model change detected > kept in model: '$matt' > removed from model: '$f' i fix `tka` to `0.451075619360217` i change initial estimate of `tcl` to `77` > significant model change detected > kept in model: '$matt' > removed from model: '$f' > significant model change detected > kept in model: '$matt' > removed from model: '$f' i parameter labels from comments will be replaced by 'label()' using C compiler: 'gcc.exe (GCC) 13.2.0' In file included from D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2_model_shared.h:3, from rx_d172778d4fd1aea116d99dfdce0b8915_x64.c:120: D:\RCompile\CRANincoming\R-devel\lib\rxode2\include/rxode2.h:3: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | : note: this is the location of the previous definition i parameter labels from comments are typically ignored in non-interactive mode i Need to run with the source intact to parse comments i parameter labels from comments will be replaced by 'label()' [ FAIL 0 | WARN 1 | SKIP 3 | PASS 274 ] ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-strncmpi.R:2:3' • On Windows (1): 'test-zzzzz.R:3:5' • file.exists(fileCbindStudyIndividual) is not TRUE (1): 'test-cbind-study-individual.R:40:3' [ FAIL 0 | WARN 1 | SKIP 3 | PASS 274 ] > > ## test_check("rxode2", > ## stop_on_failure = FALSE, > ## reporter = testthat::LocationReporter > ## ) > > proc.time() user system elapsed 43.34 11.45 72.42