* installing *source* package ‘rxode2’ ... ** using staged installation R Under development (unstable) (2024-09-17 r87161) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. R> ## This is only for rxode2 R> for (f in c("inst/include/rxode2_RcppExports.h", "src/RcppExports.cpp")) { + l <- readLines(f) + w <- which(regexpr("^[#]include ", l) != -1) + if (length(w) > 0) { + l <- l[-w] + } + w <- which(regexpr("^[#]define R_STRICT_HEADERS", l) != -1) + if (length(w) > 0) { + l <- l[-w] + } + l <- c("#define R_STRICT_HEADERS", + "#include ", + l) + file.out <- file(f, "wb") + writeLines(l, file.out) + close(file.out) + } R> R> l <- readLines("R/RcppExports.R") R> w <- which(regexpr("# Register entry points", l, fixed=TRUE) != -1) R> if (length(w) >= 1) { + w <- w[1] + l <- l[seq(1, w-1)] + RcppExports.R <- file("R/RcppExports.R", "wb") + writeLines(l, RcppExports.R) + close(RcppExports.R) + } R> R> .in <- suppressWarnings(readLines("src/Makevars.in")) R> .in <- gsub("@ARMA@", file.path(find.package("RcppArmadillo"),"include"), .in) R> .in <- gsub("@BH@", file.path(find.package("BH"),"include"), .in) R> .in <- gsub("@RCPP@", file.path(find.package("Rcpp"),"include"), .in) R> .in <- gsub("@EG@", file.path(find.package("RcppEigen"),"include"), .in) R> R> .in <- gsub("@SL@", paste(capture.output(StanHeaders:::LdFlags()), capture.output(RcppParallel:::RcppParallelLibs())), #nolint + .in) R> R> R> .badStan <- "" R> .in <- gsub("@SH@", gsub("-I", "-@ISYSTEM@", + paste(capture.output(StanHeaders:::CxxFlags()), # nolint + capture.output(RcppParallel:::CxxFlags()), # nolint + paste0("-@ISYSTEM@'", system.file('include', 'src', package = 'StanHeaders', mustWork = TRUE), "'"), + .badStan)), + .in) R> R> R> R> R> if (.Platform$OS.type == "windows" && !file.exists("src/Makevars.win")) { + .in <- gsub("@CXX14STD@", "-std=c++1y", .in) + file.out <- file("src/Makevars.win", "wb") + writeLines(gsub("@ISYSTEM@", "I", .in), + file.out) + close(file.out) + } else { + .in <- gsub("@CXX14STD@", "-std=gnu++14", .in) + file.out <- file("src/Makevars", "wb") + writeLines(gsub("@ISYSTEM@", "isystem", .in), + file.out) + close(file.out) + } R> R> if (file.exists("man/reexports.Rd")) { + l <- readLines("man/reexports.Rd") + if (!any(regexpr("[\\]value", l) != -1)) { + l <- c(l, "\\value{ Inherited from parent routine }") + file.out <- file("man/reexports.Rd", "wb") + writeLines(l, file.out) + close(file.out) + } + } R> R> R> unlink("R/rxode2_md5.R") R> R> cpp <- list.files("src", pattern = ".(c|h|cpp|f)$") R> include <- list.files("inst/include") R> #Rfiles <- list.files("R/", pattern = ".R") R> R> cmd <- file.path(R.home("bin"), "R") R> args <- c("CMD", "config") R> R> md5 <- digest::digest(c(lapply(c(paste0("src/", cpp), + paste0("inst/include/", include)#, + #paste0("R/", Rfiles) + ), digest::digest, file = TRUE), + ## vapply(c("BLAS_LIBS", "CC", "CFLAGS", "CPICFLAGS", + ## "CXX", "CXXFLAGS", "CXXPICFLAGS", + ## "CXX11", "CXX11STD", "CXX11FLAGS", "CXX11PICFLAGS", + ## "CXX14", "CXX14STD", "CXX14FLAGS", "CXX14PICFLAGS", + ## "CXX17", "CXX17STD", "CXX17FLAGS", "CXX17PICFLAGS", + ## "CXX20", "CXX20STD", "CXX20FLAGS", "CXX20PICFLAGS", + ## "FC", "FFLAGS", "FCFLAGS", "FPICFLAGS"), + ## function(cfg) { + ## rawToChar(sys::exec_internal(cmd, c(args, cfg))$stdout) + ## }, character(1) + ## ), + "" + )) R> unlink("R/rxode2_md5.R") R> md5file <- file("R/rxode2_md5.R", "wb") R> writeLines(sprintf("rxode2.md5 <- \"%s\"\n", md5), md5file) R> close(md5file) R> R> l <- readLines("DESCRIPTION") R> w <- which(regexpr("Version[:] *(.*)$", l) != -1) R> v <- gsub("Version[:] *(.*)$", "\\1", l[w]) R> R> unlink("inst/include/rxode2parseVer.h") R> ode.h <- file("inst/include/rxode2parseVer.h", "wb") R> writeLines(c(sprintf("#define __VER_md5__ \"%s\"", md5), + "#define __VER_repo__ \"https://github.com/nlmixr2/rxode2\"", + sprintf("#define __VER_ver__ \"%s\"", v)), + ode.h) R> close(ode.h) R> R> unlink("src/sbuf.c") R> l <- readLines("inst/include/sbuf.c") R> sbuf.c <- file("src/sbuf.c", "wb") R> writeLines(l, sbuf.c) R> close(sbuf.c) R> R> R> unlink("src/codegen2.h") R> l <- readLines("inst/include/rxode2_model_shared.c") R> R> l <- l[l != ""] R> l <- gsub(" *= *NULL;", "=NULL;", l) R> R> def <- l R> w <- which(regexpr("double _prod", def) != -1) - 1 R> def <- def[1:w] R> def <- gsub("=NULL", "", def) R> def <- gsub("[^ ]* *[*]?([^;]*);", "\\1", def) R> R> def <- unique(c(def, c("_sum", "_udf", "_sign", "_prod", "_max", "_min", "_transit4P", "_transit3P", "_assignFuns0", "_assignFuns", "_getRxSolve_", "_solveData", "_rxord", "__assignFuns2"))) R> R> w0 <- which(grepl("double +_prod", l))[1] R> r <- 1:(w0 - 1) R> l0 <- l[r] R> l <- l[-r] R> R> R> w1 <- which(regexpr("dynamic start", l) != -1) R> l1 <- l[1:w1] R> R> R> R> w2 <- which(regexpr("dynamic stop", l) != -1) R> l2 <- l[seq(w2, length(l))] R> R> w3 <- which(regexpr("assign start", l2) != -1) R> R> l3 <- l2[seq(w3, length(l2))] R> l2 <- l2[1:w3] R> R> w4 <- which(regexpr("assign stop", l3) != -1) R> l3 <- l3[seq(w4, length(l3))] R> R> dfP <- l[seq(w1+1, w2-1)] R> R> dfP <- dfP[regexpr("^ *$", dfP)==-1] R> df <- setNames(do.call("rbind",lapply(seq_along(dfP), + function(i) { + .r <- sub("^ *", "", dfP[[i]]) + .r <- sub("^([^ ]*) *= *[(]", "\\1,", .r) + .r <- sub("^([^ ]*) *[)] *R_GetCCallable *[(] *\"", "\\1,", .r, perl=TRUE) + .r <- sub("^([^ ]*) *\" *, *\"", "\\1,", .r, perl=TRUE) + .r <- sub("^([^ ]*)\" *[)] *; *", "\\1",.r, perl=TRUE) + data.frame(t(strsplit(.r, ",")[[1]]),stringsAsFactors = FALSE) + })), c("fun", "type", "package", "packageFun")) R> R> df$rxFun <- df$fun R> df$argMax <- df$argMin <- NA_integer_ R> df$threadSafe <- 1L R> df <- df[,c("rxFun", "fun", "type", "package", "packageFun", "argMin", "argMax", "threadSafe")] R> df$rxFun <- gsub("_llik", "llik", df$rxFun) R> R> def <- def[!(def %in% df$rxFun)] R> def <- def[!(def %in% df$fun)] R> R> .parseEnv <- new.env(parent=emptyenv()) R> source("R/parseFuns.R") R> R> df$argMin <- vapply(df$rxFun, function(f) { + .n <- .parseEnv$.parseNum[f] + if (is.na(.n)) return(NA_integer_) + .n <-setNames(.n, NULL) + as.integer(.n) + }, integer(1), USE.NAMES=TRUE) R> R> df$argMax <- df$argMin R> R> dfStr <- deparse(df) R> dfStr[1] <- paste(".parseEnv$.rxode2parseDf <- ", dfStr[1]) R> R> dfIni.R <- file("R/dfIni.R", "wb") R> writeLines(dfStr, + dfIni.R) R> close(dfIni.R) R> R> ## deparse1 came from R 4.0, use deparse2 R> deparse2 <- function(expr, collapse = " ", width.cutoff = 500L, ...) { + paste(deparse(expr, width.cutoff, ...), collapse = collapse) + } R> R> final <- c("#include ", + "#include ", + "unsigned long int __timeId=0;", + "void writeHeader(const char *md5, const char *extra) {", + paste0("sAppend(&sbOut, \"#define ", def, " _rx%s%s%ld\\n\", extra, md5, __timeId++);"), + "}", + "void writeBody0(void) {", + paste0("sAppendN(&sbOut, ", vapply(paste0(l0, "\n"), deparse2, character(1)), ", ", nchar(l0) + 1, ");"), + "}", + "void writeBody1(void) {", + paste0("sAppendN(&sbOut, ", vapply(paste0(l1, "\n"), deparse2, character(1)), ", ", nchar(l1) + 1, ");"), + "}", + "void writeBody2(void) {", + paste0("sAppendN(&sbOut, ", vapply(paste0(l2, "\n"), deparse2, character(1)), ", ", nchar(l2) + 1, ");"), + "}", + "void writeBody3(void) {", + paste0("sAppendN(&sbOut, ", vapply(paste0(l3, "\n"), deparse2, character(1)), ", ", nchar(l3) + 1, ");"), + "}", + "void writeFooter(void) {", + paste0("sAppendN(&sbOut, \"#undef ", def, "\\n\", ", nchar(def) + 8, ");"), + "}" + ) R> R> codegen2.h <- file("src/codegen2.h", "wb") R> writeLines(final, + codegen2.h) R> close(codegen2.h) R> > proc.time() user system elapsed 0.225 0.035 0.253 --------[begin src/Makevars]-------- # -*- mode: makefile-gmake -*- BH=/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include RCPP=/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include EG=/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include SH=-isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' CXX_STD = CXX17 ################################################################################ ## Package library flags. PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS) -L'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/lib/' -Wl,-rpath,'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/lib/' -ltbb -ltbbmalloc # Release options PKG_CFLAGS = -D_isrxode2_ PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"$(BH)" -isystem"$(EG)" $(SH) -isystem"$(RCPP)" --------[end src/Makevars]-------- --------[begin R/RxODE_md5.R]-------- rxode2.md5 <- "92e9ff671b8c1ed5389b15f0a6250431" --------[end R/RxODE_md5.R]-------- ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ using C++17 g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:6: ../inst/include/rxode2.h:3:9: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c approx.c -o approx.o approx.c:5:9: warning: "STRICT_R_HEADERS" redefined 5 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c boost.cpp -o boost.o boost.cpp:13:9: warning: "STRICT_R_HEADERS" redefined 13 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c box.c -o box.o In file included from box.c:5: ../inst/include/rxode2.h:3:9: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c call_dvode.c -o call_dvode.o call_dvode.c:11:9: warning: "STRICT_R_HEADERS" redefined 11 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c cbindThetaOmega.cpp -o cbindThetaOmega.o cbindThetaOmega.cpp:2:9: warning: "STRICT_R_HEADERS" redefined 2 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cfode.c -o cfode.o cfode.c:4:9: warning: "STRICT_R_HEADERS" redefined 4 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cfode_static.c -o cfode_static.o cfode_static.c:4:9: warning: "STRICT_R_HEADERS" redefined 4 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c checkmate.cpp -o checkmate.o checkmate.cpp:3:9: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c checkmate_stub.c -o checkmate_stub.o checkmate_stub.c:2:9: warning: "STRICT_R_HEADERS" redefined 2 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c codegen.c -o codegen.o codegen.c:2:9: warning: "STRICT_R_HEADERS" redefined 2 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition codegen.c: In function ‘codegen’: codegen.c:344:19: warning: unused variable ‘assignOne’ [-Wunused-variable] 344 | int assignOne = 0; | ^~~~~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common.c -o common.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c corfailure.c -o corfailure.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c correction.c -o correction.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c cvPost.cpp -o cvPost.o cvPost.cpp:3:9: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c daxpy.c -o daxpy.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ddot.c -o ddot.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dgefa.c -o dgefa.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dgesl.c -o dgesl.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c dgpadm.f -o dgpadm.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c dlsoda.f -o dlsoda.o dlsoda.f:2536:72: 2536 | IF (JT .GE. 4) LENWM = (2*ML + MU + 1)*N + 2 | ^ Warning: ‘ml’ may be used uninitialized [-Wmaybe-uninitialized] dlsoda.f:2407:32: 2407 | 1 LENIW, LENRW, LENWM, ML, MORD, MU, MXHNL0, MXSTP0 | ^ note: ‘ml’ was declared here dlsoda.f:2536:72: 2536 | IF (JT .GE. 4) LENWM = (2*ML + MU + 1)*N + 2 | ^ Warning: ‘mu’ may be used uninitialized [-Wmaybe-uninitialized] dlsoda.f:2407:42: 2407 | 1 LENIW, LENRW, LENWM, ML, MORD, MU, MXHNL0, MXSTP0 | ^ note: ‘mu’ was declared here dlsoda.f:2615:29: 2615 | IF (H0 .NE. 0.0D0 .AND. (T + H0 - TCRIT)*H0 .GT. 0.0D0) | ^ Warning: ‘h0’ may be used uninitialized [-Wmaybe-uninitialized] dlsoda.f:2412:48: 2412 | DOUBLE PRECISION ATOLI, AYI, BIG, EWTI, H0, HMAX, HMX, RH, RTOLI, | ^ note: ‘h0’ was declared here dlsoda.f:2851:72: 2851 | IHIT = ABS(TN - TCRIT) .LE. 100.0D0*UROUND*HMX | ^ Warning: ‘tcrit’ may be used uninitialized [-Wmaybe-uninitialized] dlsoda.f:2413:14: 2413 | 1 TCRIT, TDIST, TNEXT, TOL, TOLSF, TP, SIZE, SUM, W0 | ^ note: ‘tcrit’ was declared here dlsoda.f:2874:10: 2874 | IF (IHIT) T = TCRIT | ^ Warning: ‘ihit’ may be used uninitialized [-Wmaybe-uninitialized] dlsoda.f:2415:18: 2415 | LOGICAL IHIT | ^ note: ‘ihit’ was declared here gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dop853.c -o dop853.o dop853.c:5:9: warning: "STRICT_R_HEADERS" redefined 5 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dscal.c -o dscal.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c dsphiv.f -o dsphiv.o dsphiv.f:270:72: 270 | wsp(iphih+mbrkdwn+1) = hj1j*wsp(iphih+2*mx+mbrkdwn-1) | ^ Warning: ‘hj1j’ may be used uninitialized [-Wmaybe-uninitialized] dsphiv.f:125:35: 125 | . avnorm, hj1j, hjj, SQR1 | ^ note: ‘hj1j’ was declared here g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c et.cpp -o et.o et.cpp:4:9: warning: "STRICT_R_HEADERS" redefined 4 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c etTran.cpp -o etTran.o etTran.cpp:4:9: warning: "STRICT_R_HEADERS" redefined 4 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition etTran.cpp: In function ‘Rcpp::List etTrans(Rcpp::List, const Rcpp::RObject&, bool, bool, bool, bool, Rcpp::Nullable >, Rcpp::CharacterVector, bool, bool, bool, Rcpp::Nullable >)’: etTran.cpp:784:32: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 784 | if (hasCmt || covColi >= 0 && as(lName[covColi]) != "cmt"){ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ etTran.cpp:2521:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2521 | id.size() > (idxOut = idxOutput[iCur]) && | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ etTran.cpp:2524:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2524 | idxInput.size() > idxOut && | ~~~~~~~~~~~~~~~~^~~~~~~~ etTran.cpp:2532:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2532 | idxOutput.size() < iCur+1 && | ~~~~~~~~~~~~~~~~~^~~~~~~~ etTran.cpp:2533:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2533 | id.size() > (idxOut = idxOutput[iCur+1]) && | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ etTran.cpp:2536:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2536 | idxInput.size() > idxOut && | ~~~~~~~~~~~~~~~~^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c expandGrid.cpp -o expandGrid.o expandGrid.cpp:6:9: warning: "STRICT_R_HEADERS" redefined 6 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c expm.cpp -o expm.o In file included from expm.cpp:11: ../inst/include/rxode2.h:3:9: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c fast_factor.cpp -o fast_factor.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fnorm.c -o fnorm.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c forder.cpp -o forder.o forder.cpp:5:9: warning: "STRICT_R_HEADERS" redefined 5 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c genModelVars.c -o genModelVars.o genModelVars.c:2:9: warning: "STRICT_R_HEADERS" redefined 2 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getOption.c -o getOption.o getOption.c:2:9: warning: "STRICT_R_HEADERS" redefined 2 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c handle_evid.c -o handle_evid.o handle_evid.c:5:9: warning: "STRICT_R_HEADERS" redefined 5 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c idamax.c -o idamax.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o init.c:5:9: warning: "STRICT_R_HEADERS" redefined 5 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c intdy.c -o intdy.o intdy.c:5:9: warning: "STRICT_R_HEADERS" redefined 5 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c isEt.c -o isEt.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lincmt.c -o lincmt.o lincmt.c:2:9: warning: "STRICT_R_HEADERS" redefined 2 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c lincmtB.cpp -o lincmtB.o lincmtB.cpp:63:9: warning: "STRICT_R_HEADERS" redefined 63 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:13, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun.hpp:201, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:10, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math.hpp:19, from lincmtB.cpp:64: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::combination(std::vector&, const int&, const int&, const int&)’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:73:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 73 | for (std::size_t i = 0; i < p - 1; i++) { | ~~^~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:79:16: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 79 | } while (k < x); | ~~^~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::combos(const int&, const double&, const int&, std::vector > >&)’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:102:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 102 | for (std::size_t i = 1; i != choose_dimk + 1; i++) { | ~~^~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:105:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 105 | for (std::size_t j = 0; j != k; j++) { | ~~^~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::increment(std::vector&, const int&, const double&, const std::vector&, std::vector >&)’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:126:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 126 | for (std::size_t j = 0; j != k; j++) { | ~~^~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:132:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | while ((first_zero < index.size()) && index[first_zero]) { | ~~~~~~~~~~~^~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:135:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | if (first_zero == index.size()) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:143:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t i = 0; i != first_zero + 1; i++) { | ~~^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::signcombos(const int&, const double&, const int&, std::vector > >&)’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:168:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 168 | for (std::size_t i = 1; i != choose_dimk + 1; i++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_ccdf_log.hpp:5, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:240, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:16, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:14: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lccdf.hpp: In function ‘stan::return_type_t stan::math::normal_lccdf(const T_y&, const T_loc&, const T_scale&)’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lccdf.hpp:68: note: ‘-Wmisleading-indentation’ is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers 68 | } else if (scaled_diff > 8.25 * INV_SQRT_TWO) { /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/normal_lccdf.hpp:68: note: adding ‘-flarge-source-files’ will allow for more column-tracking support, at the expense of compilation time and memory In file included from lincmtB.cpp:108: ../inst/include/rxode2parseGetTime.h: In function ‘int handleInfusionStartRm(int*, int*, double*, int*, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’: ../inst/include/rxode2parseGetTime.h:223: warning: unused variable ‘curEvid’ [-Wunused-variable] 223 | int curEvid = getEvid(ind, ind->idose[*endIdx+1]); In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:5, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_2F1_converges.hpp:5, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err.hpp:4, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core/profiling.hpp:9, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/core.hpp:53, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:8: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* = 0]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ 29 | elementwise_check([](double x) { return std::isfinite(x); }, function, name, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | y, "finite"); | ~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15: required from ‘stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ 35 | check_finite("hypergeometric_pFq", "a", a_ref); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector >; Tb = std::vector >; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ 125 | return hypergeometric_pFq(to_vector(a), to_vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ 148 | return hypergeometric_3F2(std::vector(a), std::vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:37: required from here 77 | + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* = 0]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ 28 | elementwise_check([](double x) { return !std::isnan(x); }, function, name, y, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 | "not nan"); | ~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16: required from ‘stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ 39 | check_not_nan("hypergeometric_pFq", "a", a_ref); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector >; Tb = std::vector >; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]’ 125 | return hypergeometric_pFq(to_vector(a), to_vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]’ 148 | return hypergeometric_3F2(std::vector(a), std::vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:37: required from here 77 | + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* = 0]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ 29 | elementwise_check([](double x) { return std::isfinite(x); }, function, name, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | y, "finite"); | ~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15: required from ‘stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ 35 | check_finite("hypergeometric_pFq", "a", a_ref); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ 189 | return hypergeometric_pFq(a_args, b_args, z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ 190 | auto hyper1 = hypergeometric_2F1(a1_euler, a2_euler, b1, z_euler); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ 306 | return internal::grad_2F1_impl(a1, a2, b1, z, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 307 | precision, max_steps); | ~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here 37 | = grad_2F1(a + b, 1.0, a + 1, z); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* = 0]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ 29 | elementwise_check([](double x) { return std::isfinite(x); }, function, name, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | y, "finite"); | ~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:36:15: required from ‘stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ 36 | check_finite("hypergeometric_pFq", "b", b_ref); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ 189 | return hypergeometric_pFq(a_args, b_args, z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ 190 | auto hyper1 = hypergeometric_2F1(a1_euler, a2_euler, b1, z_euler); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ 306 | return internal::grad_2F1_impl(a1, a2, b1, z, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 307 | precision, max_steps); | ~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here 37 | = grad_2F1(a + b, 1.0, a + 1, z); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* = 0]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ 28 | elementwise_check([](double x) { return !std::isnan(x); }, function, name, y, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 | "not nan"); | ~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16: required from ‘stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ 39 | check_not_nan("hypergeometric_pFq", "a", a_ref); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ 189 | return hypergeometric_pFq(a_args, b_args, z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ 190 | auto hyper1 = hypergeometric_2F1(a1_euler, a2_euler, b1, z_euler); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ 306 | return internal::grad_2F1_impl(a1, a2, b1, z, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 307 | precision, max_steps); | ~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here 37 | = grad_2F1(a + b, 1.0, a + 1, z); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* = 0]’: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’ 28 | elementwise_check([](double x) { return !std::isnan(x); }, function, name, y, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 | "not nan"); | ~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:40:16: required from ‘stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]’ 40 | check_not_nan("hypergeometric_pFq", "b", b_ref); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]’ 189 | return hypergeometric_pFq(a_args, b_args, z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]’ 190 | auto hyper1 = hypergeometric_2F1(a1_euler, a2_euler, b1, z_euler); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]’ 306 | return internal::grad_2F1_impl(a1, a2, b1, z, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 307 | precision, max_steps); | ~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here 37 | = grad_2F1(a + b, 1.0, a + 1, z); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ In function ‘double handleInfusionItem(int, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’, inlined from ‘double getTime__(int, rx_solving_options_ind*, int)’ at ../inst/include/rxode2parseGetTime.h:381: ../inst/include/rxode2parseGetTime.h:314: warning: ‘infBidx’ may be used uninitialized [-Wmaybe-uninitialized] 314 | if (infBidx == -1) return 0.0; ../inst/include/rxode2parseGetTime.h: In function ‘double getTime__(int, rx_solving_options_ind*, int)’: ../inst/include/rxode2parseGetTime.h:312: note: ‘infBidx’ was declared here 312 | int infBidx; gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lsoda.c -o lsoda.o lsoda.c:5:9: warning: "STRICT_R_HEADERS" redefined 5 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gfortran-14 -fpic -g -O2 -Wall -mtune=native -c matexp.f -o matexp.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matexp_HM98.c -o matexp_HM98.o matexp_HM98.c:28:9: warning: "STRICT_R_HEADERS" redefined 28 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c methodswitch.c -o methodswitch.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c nearPD.cpp -o nearPD.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c omegaChol.c -o omegaChol.o omegaChol.c:7:9: warning: "STRICT_R_HEADERS" redefined 7 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gfortran-14 -fpic -g -O2 -Wall -mtune=native -c opkda2.f -o opkda2.o opkda2.f:650:28: 650 | INTEGER FUNCTION IXSAV (IPAR, IVALUE, ISET) | ^ Warning: ‘__result_ixsav’ may be used uninitialized [-Wmaybe-uninitialized] gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c orderswitch.c -o orderswitch.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c par_solve.cpp -o par_solve.o par_solve.cpp:5:9: warning: "STRICT_R_HEADERS" redefined 5 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition In file included from par_solve.cpp:15: ../inst/include/rxode2parseGetTime.h: In function ‘int handleInfusionStartRm(int*, int*, double*, int*, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’: ../inst/include/rxode2parseGetTime.h:223:9: warning: unused variable ‘curEvid’ [-Wunused-variable] 223 | int curEvid = getEvid(ind, ind->idose[*endIdx+1]); | ^~~~~~~ par_solve.cpp: In function ‘void handleSS(int*, int*, double*, double*, double*, double, double, int, int*, int, int*, rx_solving_options*, rx_solving_options_ind*, t_update_inis, void*)’: par_solve.cpp:1317:39: warning: variable ‘oldI’ set but not used [-Wunused-but-set-variable] 1317 | ei=0, wh, cmt, wh100, whI, wh0, oldI, | ^~~~ ../inst/include/rxode2parseGetTime.h: In function ‘double handleInfusionItem(int, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’: ../inst/include/rxode2parseGetTime.h:314:5: warning: ‘infBidx’ may be used uninitialized [-Wmaybe-uninitialized] 314 | if (infBidx == -1) return 0.0; | ^~ ../inst/include/rxode2parseGetTime.h:312:9: note: ‘infBidx’ was declared here 312 | int infBidx; | ^~~~~~~ par_solve.cpp: In function ‘void solveWith1Pt(int*, int*, double*, double*, double*, double, double, int, int*, int, int*, rx_solving_options*, rx_solving_options_ind*, t_update_inis, void*)’: par_solve.cpp:708:5: warning: ‘idid’ may be used uninitialized [-Wmaybe-uninitialized] 708 | if (idid <= 0) { | ^~ par_solve.cpp:701:7: note: ‘idid’ was declared here 701 | int idid, itol=0; | ^~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c parseLinCmt.c -o parseLinCmt.o parseLinCmt.c:2:9: warning: "STRICT_R_HEADERS" redefined 2 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c print_node.c -o print_node.o print_node.c:2:9: warning: "STRICT_R_HEADERS" redefined 2 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c prja.c -o prja.o prja.c:5:9: warning: "STRICT_R_HEADERS" redefined 5 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c qs.cpp -o qs.o qs.cpp:2:9: warning: "STRICT_R_HEADERS" redefined 2 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rprintf.c -o rprintf.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rx2api.c -o rx2api.o In file included from rx2api.c:1: ../inst/include/rxode2.h:3:9: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c rxData.cpp -o rxData.o In file included from checkmate.h:3, from rxData.cpp:29: ../inst/include/rxode2.h:3:9: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c rxInv.cpp -o rxInv.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c rxOptRep.cpp -o rxOptRep.o rxOptRep.cpp:1:9: warning: "R_NO_REMAP" redefined 1 | #define R_NO_REMAP | ^~~~~~~~~~ : note: this is the location of the previous definition rxOptRep.cpp:4:9: warning: "STRICT_R_HEADERS" redefined 4 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c rxStack.cpp -o rxStack.o rxStack.cpp:3:9: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c rxode2_df.cpp -o rxode2_df.o In file included from checkmate.h:3, from rxode2_df.cpp:31: ../inst/include/rxode2.h:3:9: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition In file included from rxode2_df.cpp:36: ../inst/include/rxode2parseGetTime.h: In function ‘int handleInfusionStartRm(int*, int*, double*, int*, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’: ../inst/include/rxode2parseGetTime.h:223:9: warning: unused variable ‘curEvid’ [-Wunused-variable] 223 | int curEvid = getEvid(ind, ind->idose[*endIdx+1]); | ^~~~~~~ In function ‘double handleInfusionItem(int, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’, inlined from ‘double getTime__(int, rx_solving_options_ind*, int)’ at ../inst/include/rxode2parseGetTime.h:381:34: ../inst/include/rxode2parseGetTime.h:314:5: warning: ‘infBidx’ may be used uninitialized [-Wmaybe-uninitialized] 314 | if (infBidx == -1) return 0.0; | ^~ ../inst/include/rxode2parseGetTime.h: In function ‘double getTime__(int, rx_solving_options_ind*, int)’: ../inst/include/rxode2parseGetTime.h:312:9: note: ‘infBidx’ was declared here 312 | int infBidx; | ^~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c rxthreefry.cpp -o rxthreefry.o rxthreefry.cpp:3:9: warning: "STRICT_R_HEADERS" redefined 3 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sbuf.c -o sbuf.o sbuf.c:2:9: warning: "STRICT_R_HEADERS" redefined 2 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c scaleh.c -o scaleh.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c seed.cpp -o seed.o seed.cpp:2:9: warning: "STRICT_R_HEADERS" redefined 2 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c solsy.c -o solsy.o solsy.c:5:9: warning: "STRICT_R_HEADERS" redefined 5 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stoda.c -o stoda.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c strdup_printf.c -o strdup_printf.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c strncmp.c -o strncmp.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c strncmpi.c -o strncmpi.o strncmpi.c:31:9: warning: "STRICT_R_HEADERS" redefined 31 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tran.c -o tran.o tran.c:2:9: warning: "STRICT_R_HEADERS" redefined 2 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition In file included from parseFuns.h:151, from tran.c:151: parseFunsDosing.h: In function ‘handleFunctionTad’: parseFunsDosing.h:86:61: warning: value computed is not used [-Wunused-value] 86 | handleFunctionTadEmptyCcode(tf, v2) || | ^~ In file included from tran.c:155: parseAssignStr.h: In function ‘handleStrAssign’: parseAssignStr.h:129:13: warning: unused variable ‘buf’ [-Wunused-variable] 129 | char *buf = tb.str.line[tb.id]; | ^~~ In file included from tran.c:156: parseLevels.h: In function ‘handleLevelsStr1’: parseLevels.h:94:11: warning: unused variable ‘n’ [-Wunused-variable] 94 | int n = get_str_assign_int(tb.id, v); | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c udf.cpp -o udf.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utilc.c -o utilc.o utilc.c:5:9: warning: "STRICT_R_HEADERS" redefined 5 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include" -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include" -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src' -isystem"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c utilcpp.cpp -o utilcpp.o utilcpp.cpp:5:9: warning: "STRICT_R_HEADERS" redefined 5 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/sitmo/include' -I'/home/hornik/tmp/CRAN_recheck/Library/lotri/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/PreciseSums/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/dparser/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vmnorm.c -o vmnorm.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o rxode2.so RcppExports.o approx.o boost.o box.o call_dvode.o cbindThetaOmega.o cfode.o cfode_static.o checkmate.o checkmate_stub.o codegen.o common.o corfailure.o correction.o cvPost.o daxpy.o ddot.o dgefa.o dgesl.o dgpadm.o dlsoda.o dop853.o dscal.o dsphiv.o et.o etTran.o expandGrid.o expm.o fast_factor.o fnorm.o forder.o genModelVars.o getOption.o handle_evid.o idamax.o init.o intdy.o isEt.o lincmt.o lincmtB.o lsoda.o matexp.o matexp_HM98.o methodswitch.o nearPD.o omegaChol.o opkda2.o orderswitch.o par_solve.o parseLinCmt.o print_node.o prja.o qs.o rprintf.o rx2api.o rxData.o rxInv.o rxOptRep.o rxStack.o rxode2_df.o rxthreefry.o sbuf.o scaleh.o seed.o solsy.o stoda.o strdup_printf.o strncmp.o strncmpi.o tran.o udf.o utilc.o utilcpp.o vmnorm.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/lib/ -Wl,-rpath,/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/lib/ -ltbb -ltbbmalloc -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/rxode2.Rcheck/00LOCK-rxode2/00new/rxode2 ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rxode2)