rxTest({ test_that("Zero variances; RxODE#299", { mod <- rxode2({ eff(0) <- 1 C2 <- centr / V2 C3 <- peri / V3 CL <- TCl * exp(eta.Cl) ## This is coded as a variable in the model d/dt(depot) <- -KA * depot d/dt(centr) <- KA * depot - CL * C2 - Q * C2 + Q * C3 d/dt(peri) <- Q * C2 - Q * C3 d/dt(eff) <- Kin - Kout * (1 - C2 / (EC50 + C2)) * eff e <- eff + eff.err cp <- centr * (1 + cp.err) }) ev <- et(amount.units = "mg", time.units = "hours") %>% et(amt = 10000, cmt = "centr") %>% et(0, 48, length.out = 100) ## Variability theta <- c( KA = 2.94E-01, TCl = 1.86E+01, V2 = 4.02E+01, # central Q = 1.05E+01, V3 = 2.97E+02, # peripheral Kin = 1, Kout = 1, EC50 = 200 ) # effects omega <- lotri(eta.Cl ~ 0.4^2) sigma <- lotri(eff.err ~ 0.1, cp.err ~ 0.1) tmp <- matrix(rnorm(8^2), 8, 8) tMat <- tcrossprod(tmp, tmp) / (8^2) dimnames(tMat) <- list(NULL, names(theta)) sim <- rxSolve(mod, theta, ev, omega = omega, nSub = 100, sigma = sigma, thetaMat = tMat, nStud = 10, dfSub = 10, dfObs = 100 ) omega <- lotri(eta.Cl ~ 0) sigma <- lotri(eff.err ~ 0, cp.err ~ 0) tMat <- matrix(0, 8, 8) dimnames(tMat) <- list(NULL, names(theta)) suppressMessages(expect_error( x <- rxSolve( mod, theta, ev, omega = omega, nSub = 100, sigma = sigma, thetaMat = tMat, nStud = 10, dfSub = 10, dfObs = 100 ), NA )) expect_true(isNullZero(x$thetaMat)) expect_true(isNullZero(x$omegaList)) expect_true(isNullZero(x$sigmaList)) expect_true(isNullZero(NULL)) }) })